Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002581

Physical Location & Seq

Genomic Coordinates Reverse (-)

31667757 .. 31669492

Gene Structure 1736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G335200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCGGCTAATGACGGGCGTGGGCAAGCAAGGACCTTGGACCCAGAGAAGCAAACACTCCTGAATCAGCACACAGAGAAACACTTCACCGCTGGGGAGATCGTCCGTGACATCATCATCGGCGTATCCGACGGTCTTACCGTGCCCTTCGCTCTCGCAGCAGGACTCTCCGGTGCCAATGCCACGTCATCTATCGTTCTCACTGCTGGCATCGCCGAAGTCGCTGCCGGTGCCATCTCCATGGGACTCGGCGGATATCTGGCGGCGAAAAGCGAGGCTGATCATTATACGAGGGAGCTGAGGAGAGAACAAGAGGAAGTAGTAAACGTTCCTGATACAGAGGCGGCAGAGGTAGCAGAGATACTGGCAGAGTATGGGGTAGAGCCACATGAGTATACTCCTGTGGTGAACGCTCTAAGGAAGAATCCCAAAGCGTGGGTGGATTTCATGATGAAGTTTGAACTGGGATTGGAAAAGCCAGATCCAAGAAGAGCACTGCACAGCGCCCTCACCATTGCCATTGCTTACGTTTTGGGTGGATCAGTGCCCCTCCTTCCTTACGTCTTCTTTCCGAGGGCTAGAGAAGCTTTGGTTGCCTCCGTTGTCGTCACCTTGGGGGCGTTGCTAATATTTGGCTTTGCCAAGGGCCACTTTACCGGCAATAAACCCTTCCAGAGTGCCTTCCAGACTGCTCTCATTGGAGCCGTGGCATCCGCTGCCGCTTTTGGCCTGGCAAAGGCTATCCATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

251

Amino Acids

26.43

Weight (kDa)

5.81

Isoelectric Point (pI)

27.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01770
fragaria_vesca	FvH4_4g33340 FvH4_4g33340 FvH4_4g33340
malus_domestica	MD13G1018700.v1.1 MD16G1016500.v1.1 MD16G1016600.v1.1
prunus_persica	Prupe.1G335200_v2.0.a1 Prupe.1G335300_v2.0.a1
pyrus_communis	pycom16g01520 pycom16g01530
rosa_chinensis	RchiOBHm_Chr4g0442571 RchiOBHm_Chr4g0442581 RchiOBHm_Chr4g0442611
rosa_laevigata	RLG00000005999 RLG00000006000 RLG00000006001
rosa_multiflora	Rmu_sc0025219.1_g000002 Rmu_ssc0000204.1_g000037 Rmu_ssc0000204.1_g000042 Rmu_ssc0000204.1_g000044
rosa_roxburghii	Rroxscaffold_5G00383380 Rroxscaffold_5G00383390 Rroxscaffold_5G00383410
rosa_rugosa	Rorug04G0341300 Rorug04G0341400 Rorug04G0341400 Rorug04G0341400
rosa_samantha	Rh4AG393700 Rh4AG393800 Rh4AG394000 Rh4BG406800 Rh4BG406900 Rh4BG407000 Rh4CG422400 Rh4DG400700 Rh4DG401000
rosa_wichuraiana	Rw4G034020 Rw4G034030 Rw4G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	173, 230
AccB7I	CCANNNNNTGG	1 cut(s)	435
AccI	GTMKAC	1 cut(s)	395
AciI	CCGC	7 cut(s)	5, 90, 252, 263, 344, 714, 720
AclI	AACGTT	1 cut(s)	327
AclWI	GGATC	2 cut(s)	476, 547
AfiI	CCNNNNNNNGG	2 cut(s)	435, 736
AgsI	TTSAA	1 cut(s)	461
AjiI	CACGTC	1 cut(s)	186
AjnI	CCWGG	1 cut(s)	729
AluBI	AGCT	2 cut(s)	298, 587
AluI	AGCT	2 cut(s)	298, 587
Alw21I	GWGCWC	1 cut(s)	496
AlwI	GGATC	2 cut(s)	476, 547
AoxI	GGCC	2 cut(s)	646, 727
ApeKI	GCWGC	3 cut(s)	158, 224, 716
Asp700I	GAANNNNTTC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	506
AspS9I	GGNCC	3 cut(s)	33, 40, 646
AsuHPI	GGTGA	4 cut(s)	79, 418, 502, 601
AvaII	GGWCC	2 cut(s)	33, 40
BaeGI	GKGCMC	2 cut(s)	147, 549
BanI	GGYRCC	2 cut(s)	173, 230
BbsI	GAAGAC	1 cut(s)	556
Bbv12I	GWGCWC	1 cut(s)	496
BbvCI	CCTCAGC	1 cut(s)	299
BbvI	GCAGC	3 cut(s)	170, 211, 703
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	1 cut(s)	689
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	1 cut(s)	731
BciVI	GTATCC	1 cut(s)	136
BclI	TGATCA	1 cut(s)	280
BfaI	CTAG	1 cut(s)	579
BfoI	RGCGCY	1 cut(s)	507
BfuI	GTATCC	1 cut(s)	136
BisI	GCNGC	7 cut(s)	6, 159, 225, 264, 345, 717, 720
BlsI	GCNGC	7 cut(s)	7, 160, 226, 265, 346, 718, 721
Bme1390I	CCNGG	1 cut(s)	731
Bme18I	GGWCC	2 cut(s)	33, 40
BmgBI	CACGTC	1 cut(s)	186
BmgT120I	GGNCC	3 cut(s)	33, 40, 646
BmiI	GGNNCC	4 cut(s)	42, 175, 232, 703
BmrFI	CCNGG	1 cut(s)	731
BmrI	ACTGGG	1 cut(s)	473
BmsI	GCATC	2 cut(s)	219, 719
BmuI	ACTGGG	1 cut(s)	473
BpiI	GAAGAC	1 cut(s)	556
Bpu10I	CCTNAGC	1 cut(s)	299
BsaJI	CCNNGG	6 cut(s)	36, 240, 572, 612, 642, 705
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	435, 736
Bse118I	RCCGGY	2 cut(s)	227, 656
Bse1I	ACTGG	2 cut(s)	369, 468
Bse3DI	GCAATG	2 cut(s)	513, 519
BseBI	CCWGG	1 cut(s)	731
BseDI	CCNNGG	6 cut(s)	36, 240, 572, 612, 642, 705
BseGI	GGATG	2 cut(s)	710, 745
BseLI	CCNNNNNNNGG	2 cut(s)	435, 736
BseMI	GCAATG	2 cut(s)	513, 519
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	2 cut(s)	369, 468
BseRI	GAGGAG	1 cut(s)	316
BseSI	GKGCMC	2 cut(s)	147, 549
BseXI	GCAGC	3 cut(s)	170, 211, 703
BseYI	CCCAGC	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	482
BshFI	GGCC	2 cut(s)	648, 729
BshNI	GGYRCC	2 cut(s)	173, 230
BsiHKAI	GWGCWC	1 cut(s)	496
BsiSI	CCGG	3 cut(s)	171, 228, 657
BslFI	GGGAC	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	435, 736
BsmFI	GGGAC	1 cut(s)	258
BsnI	GGCC	2 cut(s)	648, 729
Bsp1286I	GDGCHC	3 cut(s)	147, 496, 549
Bsp143I	GATC	4 cut(s)	99, 280, 481, 539
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	7 cut(s)	5, 90, 252, 263, 344, 714, 720
BspANI	GGCC	2 cut(s)	648, 729
BspCNI	CTCAG	1 cut(s)	291
BspHI	TCATGA	1 cut(s)	447
BspLI	GGNNCC	4 cut(s)	42, 175, 232, 703
BspPI	GGATC	2 cut(s)	476, 547
BspQI	GCTCTTC	1 cut(s)	484
BspT107I	GGYRCC	2 cut(s)	173, 230
BsrDI	GCAATG	2 cut(s)	513, 519
BsrFI	RCCGGY	2 cut(s)	227, 656
BsrI	ACTGG	2 cut(s)	369, 468
BssAI	RCCGGY	2 cut(s)	227, 656
BssECI	CCNNGG	6 cut(s)	36, 240, 572, 612, 642, 705
BssMI	GATC	4 cut(s)	99, 280, 481, 539
BssNAI	GTATAC	1 cut(s)	396
BssT1I	CCWWGG	4 cut(s)	36, 240, 612, 642
Bst1107I	GTATAC	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	731
Bst4CI	ACNGT	2 cut(s)	134, 142
Bst6I	CTCTTC	1 cut(s)	484
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstC8I	GCNNGC	2 cut(s)	27, 208
BstDEI	CTNAG	2 cut(s)	299, 416
BstDSI	CCRYGG	2 cut(s)	240, 705
BstENI	CCTNNNNNAGG	1 cut(s)	734
BstF5I	GGATG	2 cut(s)	710, 745
BstH2I	RGCGCY	1 cut(s)	507
BstHHI	GCGC	1 cut(s)	506
BstKTI	GATC	4 cut(s)	102, 283, 484, 542
BstMBI	GATC	4 cut(s)	99, 280, 481, 539
BstMWI	GCNNNNNNNGC	8 cut(s)	158, 212, 221, 230, 353, 584, 593, 716
BstNI	CCWGG	1 cut(s)	731
BstSCI	CCNGG	1 cut(s)	729
BstSLI	GKGCMC	2 cut(s)	147, 549
BstV1I	GCAGC	3 cut(s)	170, 211, 703
BstV2I	GAAGAC	1 cut(s)	556
BstX2I	RGATCY	1 cut(s)	481
BstXI	CCANNNNNNTGG	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	481
BstZ17I	GTATAC	1 cut(s)	396
BsuI	GTATCC	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	648, 729
BtgI	CCRYGG	2 cut(s)	240, 705
BtgZI	GCGATG	1 cut(s)	196
BtrI	CACGTC	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	710, 745
BtsI	GCAGTG	2 cut(s)	201, 494
BtsIMutI	CAGTG	3 cut(s)	201, 494, 549
Cac8I	GCNNGC	2 cut(s)	27, 208
CciI	TCATGA	1 cut(s)	447
CfoI	GCGC	1 cut(s)	506
Cfr10I	RCCGGY	2 cut(s)	227, 656
Cfr13I	GGNCC	3 cut(s)	33, 40, 646
CviAII	CATG	4 cut(s)	241, 389, 448, 750
DdeI	CTNAG	2 cut(s)	299, 416
DpnI	GATC	4 cut(s)	101, 282, 483, 541
DpnII	GATC	4 cut(s)	99, 280, 481, 539
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
EciI	GGCGGA	1 cut(s)	267
Eco130I	CCWWGG	4 cut(s)	36, 240, 612, 642
Eco32I	GATATC	1 cut(s)	257
Eco47I	GGWCC	2 cut(s)	33, 40
EcoNI	CCTNNNNNAGG	1 cut(s)	734
EcoO109I	RGGNCCY	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	729
EcoRV	GATATC	1 cut(s)	257
EcoT14I	CCWWGG	4 cut(s)	36, 240, 612, 642
ErhI	CCWWGG	4 cut(s)	36, 240, 612, 642
FaeI	CATG	4 cut(s)	244, 392, 451, 753
FaiI	YATR	7 cut(s)	242, 288, 375, 390, 396, 449, 751
FalI	AAGNNNNNCTT	2 cut(s)	635, 667
FaqI	GGGAC	1 cut(s)	258
FatI	CATG	4 cut(s)	240, 388, 447, 749
FbaI	TGATCA	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	395
Fnu4HI	GCNGC	7 cut(s)	6, 159, 225, 264, 345, 717, 720
FokI	GGATG	2 cut(s)	697, 732
Fsp4HI	GCNGC	7 cut(s)	6, 159, 225, 264, 345, 717, 720
FspBI	CTAG	1 cut(s)	579
GlaI	GCGC	1 cut(s)	505
GluI	GCNGC	7 cut(s)	6, 159, 225, 264, 345, 717, 720
GsaI	CCCAGC	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	507
HaeIII	GGCC	2 cut(s)	648, 729
HapII	CCGG	3 cut(s)	171, 228, 657
HhaI	GCGC	1 cut(s)	506
Hin1II	CATG	4 cut(s)	244, 392, 451, 753
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	585
HinfI	GANTC	4 cut(s)	64, 165, 246, 424
HpaII	CCGG	3 cut(s)	171, 228, 657
HphI	GGTGA	4 cut(s)	79, 418, 502, 601
Hpy166II	GTNNAC	3 cut(s)	325, 396, 409
Hpy188I	TCNGA	2 cut(s)	130, 573
Hpy188III	TCNNGA	5 cut(s)	61, 332, 448, 673, 685
Hpy8I	GTNNAC	3 cut(s)	325, 396, 409
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	4 cut(s)	157, 563, 679, 691
HpyCH4III	ACNGT	2 cut(s)	134, 142
HpyCH4IV	ACGT	4 cut(s)	185, 327, 528, 561
HpyCH4V	TGCA	1 cut(s)	499
HpyF10VI	GCNNNNNNNGC	8 cut(s)	158, 212, 221, 230, 353, 584, 593, 716
HpyF3I	CTNAG	2 cut(s)	299, 416
HpySE526I	ACGT	4 cut(s)	185, 327, 528, 561
Hsp92II	CATG	4 cut(s)	244, 392, 451, 753
HspAI	GCGC	1 cut(s)	504
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	4 cut(s)	99, 280, 481, 539
LguI	GCTCTTC	1 cut(s)	484
LmnI	GCTCC	2 cut(s)	295, 701
Lsp1109I	GCAGC	3 cut(s)	170, 211, 703
LweI	GCATC	2 cut(s)	219, 719
MaeI	CTAG	1 cut(s)	579
MaeII	ACGT	4 cut(s)	185, 327, 528, 561
MaeIII	GTNAC	2 cut(s)	107, 607
MalI	GATC	4 cut(s)	101, 282, 483, 541
MboI	GATC	4 cut(s)	99, 280, 481, 539
MboII	GAAGA	3 cut(s)	433, 501, 556
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	3 cut(s)	147, 496, 549
MlyI	GAGTC	2 cut(s)	159, 240
MmeI	TCCRAC	1 cut(s)	153
MroXI	GAANNNNTTC	1 cut(s)	83
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	2 cut(s)	92, 716
MspI	CCGG	3 cut(s)	171, 228, 657
MspR9I	CCNGG	1 cut(s)	731
MvaI	CCWGG	1 cut(s)	731
MwoI	GCNNNNNNNGC	8 cut(s)	158, 212, 221, 230, 353, 584, 593, 716
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	4 cut(s)	99, 280, 481, 539
NlaIII	CATG	4 cut(s)	244, 392, 451, 753
NlaIV	GGNNCC	4 cut(s)	42, 175, 232, 703
NmeAIII	GCCGAG	1 cut(s)	228
NmuCI	GTSAC	2 cut(s)	107, 607
PagI	TCATGA	1 cut(s)	447
PciSI	GCTCTTC	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 138
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	64, 424
PflMI	CCANNNNNTGG	1 cut(s)	435
PkrI	GCNGC	7 cut(s)	7, 160, 226, 265, 346, 718, 721
PleI	GAGTC	2 cut(s)	159, 240
PpsI	GAGTC	2 cut(s)	159, 240
PpuMI	RGGWCCY	1 cut(s)	33
Psp1406I	AACGTT	1 cut(s)	327
Psp5II	RGGWCCY	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	729
PspFI	CCCAGC	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	729
PspN4I	GGNNCC	4 cut(s)	42, 175, 232, 703
PspPI	GGNCC	3 cut(s)	33, 40, 646
PspPPI	RGGWCCY	1 cut(s)	33
PsrI	GAACNNNNNNTAC	2 cut(s)	312, 344
PsuI	RGATCY	1 cut(s)	481
RseI	CAYNNNNRTG	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	484
SatI	GCNGC	7 cut(s)	6, 159, 225, 264, 345, 717, 720
Sau3AI	GATC	4 cut(s)	99, 280, 481, 539
Sau96I	GGNCC	3 cut(s)	33, 40, 646
SchI	GAGTC	2 cut(s)	159, 240
ScrFI	CCNGG	1 cut(s)	731
SduI	GDGCHC	3 cut(s)	147, 496, 549
SetI	ASST	9 cut(s)	38, 188, 300, 330, 354, 531, 564, 589, 614
SfaNI	GCATC	2 cut(s)	219, 719
SinI	GGWCC	2 cut(s)	33, 40
SmiMI	CAYNNNNRTG	1 cut(s)	239
SsiI	CCGC	7 cut(s)	5, 90, 252, 263, 344, 714, 720
SspI	AATATT	1 cut(s)	630
SspMI	CTAG	1 cut(s)	579
StyD4I	CCNGG	1 cut(s)	729
StyI	CCWWGG	4 cut(s)	36, 240, 612, 642
TaaI	ACNGT	2 cut(s)	134, 142
TaiI	ACGT	4 cut(s)	188, 330, 531, 564
TauI	GCSGC	4 cut(s)	8, 266, 347, 722
TfiI	GAWTC	2 cut(s)	64, 424
TscAI	CASTG	3 cut(s)	208, 501, 549
TseFI	GTSAC	2 cut(s)	107, 607
TseI	GCWGC	3 cut(s)	158, 224, 716
Tsp45I	GTSAC	2 cut(s)	107, 607
TspDTI	ATGAA	2 cut(s)	436, 467
TspGWI	ACGGA	2 cut(s)	95, 589
TspRI	CASTG	3 cut(s)	208, 501, 549
Van91I	CCANNNNNTGG	1 cut(s)	435
VpaK11BI	GGWCC	2 cut(s)	33, 40
XagI	CCTNNNNNAGG	1 cut(s)	734
XcmI	CCANNNNNNNNNTGG	1 cut(s)	436
XmiI	GTMKAC	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.