Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002581

Physical Location & Seq

Genomic Coordinates Reverse (-)

31673707 .. 31675702

Gene Structure 1996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G335300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCAAATCAAAATCAAAATGGGTATGCAGACTTGGAGAAGCAGATGCTGATCCTGCACGACCATGAAGAGAAGCACTTCATGTCTAGTGAGATTGTGCGTGACGTCATTCTTGGCGTATCGGACGGTCTCACCGTCCCTTTCGCCCTCGCCGCCGGGTTGTCCGGTGCGGATGTCAGCTCCTCCATCATTCTCATTGCTGGCATTGCTGAAGTTGCCGCTGGTGCTATCTCTATGGGGCTCGGCGGGTACCTTGCTGCTAAGAGTGAAGCTGATCATTACATGAAAGAACTAAAGAGGGAACAAGATGAAATCATCGCTGTCCCTGATACAGAGGCTGCTGAGGTTGCGGAAATATTGTCACAATACGGGGCTGAACCACATGAGTATGGGCCTGTGGTGAATGCTCTAAGGAGGAATCCTCAAGCCTGGCTTGATTTCATGATGAAATTTGAACTGGGACTGGAGAAACCAGACCCGATGAGAGCCGTACAGAGTGCAATGACAATTGCGTTTTCATACATAATTGGAGGGCTGGTGCCCCTCGTGCCATACATGCTCATTCCAATTGCAACAAGGGCTGTGGTTGCATCTGTCATCCTAACCATCGTGGCTTTGATGATTTTTGGCTTTGCAAAGGGTCACTTCACGGGCACCCAACCCTTCAAGAGTGCCCTCCAAACTGCCTTCATTGGGGCCATTGCCTCTGCCGCTGCTTATTCCATTGCTAAACTTTTCCAAGCATACCACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

252

Amino Acids

26.95

Weight (kDa)

5.19

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01770
fragaria_vesca	FvH4_4g33340 FvH4_4g33340 FvH4_4g33340
malus_domestica	MD13G1018700.v1.1 MD16G1016500.v1.1 MD16G1016600.v1.1
prunus_persica	Prupe.1G335200_v2.0.a1 Prupe.1G335300_v2.0.a1
pyrus_communis	pycom16g01520 pycom16g01530
rosa_chinensis	RchiOBHm_Chr4g0442571 RchiOBHm_Chr4g0442581 RchiOBHm_Chr4g0442611
rosa_laevigata	RLG00000005999 RLG00000006000 RLG00000006001
rosa_multiflora	Rmu_sc0025219.1_g000002 Rmu_ssc0000204.1_g000037 Rmu_ssc0000204.1_g000042 Rmu_ssc0000204.1_g000044
rosa_roxburghii	Rroxscaffold_5G00383380 Rroxscaffold_5G00383390 Rroxscaffold_5G00383410
rosa_rugosa	Rorug04G0341300 Rorug04G0341400 Rorug04G0341400 Rorug04G0341400
rosa_samantha	Rh4AG393700 Rh4AG393800 Rh4AG394000 Rh4BG406800 Rh4BG406900 Rh4BG407000 Rh4CG422400 Rh4DG400700 Rh4DG401000
rosa_wichuraiana	Rw4G034020 Rw4G034030 Rw4G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	108
Acc65I	GGTACC	1 cut(s)	249
AccB1I	GGYRCC	3 cut(s)	249, 538, 653
AciI	CCGC	6 cut(s)	153, 170, 219, 246, 350, 711
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	2 cut(s)	251, 492
AfiI	CCNNNNNNNGG	1 cut(s)	693
AgsI	TTSAA	2 cut(s)	455, 667
AjnI	CCWGG	1 cut(s)	428
AluBI	AGCT	2 cut(s)	180, 272
AluI	AGCT	2 cut(s)	180, 272
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	46
AlwNI	CAGNNNCTG	2 cut(s)	49, 338
AoxI	GGCC	2 cut(s)	392, 696
ApeKI	GCWGC	3 cut(s)	257, 338, 713
ApoI	RAATTY	1 cut(s)	449
Asp700I	GAANNNNTTC	1 cut(s)	77
Asp718I	GGTACC	1 cut(s)	249
AspS9I	GGNCC	2 cut(s)	392, 696
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	124, 412
BaeGI	GKGCMC	3 cut(s)	543, 656, 676
BanI	GGYRCC	3 cut(s)	249, 538, 653
BanII	GRGCYC	1 cut(s)	243
BauI	CACGAG	1 cut(s)	545
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	3 cut(s)	244, 325, 700
BccI	CCATC	2 cut(s)	194, 614
BceAI	ACGGC	1 cut(s)	473
BciT130I	CCWGG	1 cut(s)	430
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	87
BisI	GCNGC	6 cut(s)	153, 219, 258, 339, 711, 714
BlsI	GCNGC	6 cut(s)	154, 220, 259, 340, 712, 715
Bme1390I	CCNGG	2 cut(s)	157, 430
BmgT120I	GGNCC	2 cut(s)	392, 696
BmiI	GGNNCC	4 cut(s)	251, 540, 655, 697
BmrFI	CCNGG	2 cut(s)	157, 430
BmrI	ACTGGG	1 cut(s)	467
BmsI	GCATC	2 cut(s)	36, 599
BmuI	ACTGGG	1 cut(s)	467
BplI	GAGNNNNNCTC	2 cut(s)	406, 438
BpmI	CTGGAG	1 cut(s)	485
Bpu10I	CCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	105
BsaI	GGTCTC	1 cut(s)	134
BsaWI	WCCGGW	1 cut(s)	164
BsaXI	ACNNNNNCTCC	2 cut(s)	522, 552
Bsc4I	CCNNNNNNNGG	1 cut(s)	693
Bse1I	ACTGG	2 cut(s)	462, 468
Bse3DI	GCAATG	5 cut(s)	195, 204, 507, 699, 723
Bse8I	GATNNNNATC	1 cut(s)	50
BseBI	CCWGG	1 cut(s)	430
BseGI	GGATG	2 cut(s)	178, 597
BseJI	GATNNNNATC	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	693
BseMI	GCAATG	5 cut(s)	195, 204, 507, 699, 723
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	2 cut(s)	462, 468
BseRI	GAGGAG	1 cut(s)	172
BseSI	GKGCMC	3 cut(s)	543, 656, 676
BseXI	GCAGC	3 cut(s)	244, 325, 700
BsgI	GTGCAG	1 cut(s)	41
BshFI	GGCC	2 cut(s)	394, 698
BshNI	GGYRCC	3 cut(s)	249, 538, 653
BsiSI	CCGG	2 cut(s)	156, 165
BslFI	GGGAC	3 cut(s)	122, 308, 474
BslI	CCNNNNNNNGG	1 cut(s)	693
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	3 cut(s)	122, 308, 474
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	2 cut(s)	394, 698
Bso31I	GGTCTC	1 cut(s)	134
Bsp1286I	GDGCHC	4 cut(s)	243, 543, 656, 676
Bsp143I	GATC	2 cut(s)	51, 274
BspACI	CCGC	6 cut(s)	153, 170, 219, 246, 350, 711
BspANI	GGCC	2 cut(s)	394, 698
BspCNI	CTCAG	1 cut(s)	334
BspHI	TCATGA	1 cut(s)	441
BspLI	GGNNCC	4 cut(s)	251, 540, 655, 697
BspPI	GGATC	1 cut(s)	46
BspT107I	GGYRCC	3 cut(s)	249, 538, 653
BspTNI	GGTCTC	1 cut(s)	134
BsrDI	GCAATG	5 cut(s)	195, 204, 507, 699, 723
BsrI	ACTGG	2 cut(s)	462, 468
BssMI	GATC	2 cut(s)	51, 274
BssNI	GRCGYC	1 cut(s)	105
BssSI	CACGAG	1 cut(s)	545
Bst2BI	CACGAG	1 cut(s)	545
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	2 cut(s)	128, 136
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	3 cut(s)	261, 342, 410
BstF5I	GGATG	2 cut(s)	178, 597
BstKTI	GATC	2 cut(s)	54, 277
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	2 cut(s)	51, 274
BstNI	CCWGG	1 cut(s)	430
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	2 cut(s)	155, 428
BstSLI	GKGCMC	3 cut(s)	543, 656, 676
BstV1I	GCAGC	3 cut(s)	244, 325, 700
BsuRI	GGCC	2 cut(s)	394, 698
BtgZI	GCGATG	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	178, 597
Cac8I	GCNNGC	1 cut(s)	202
CaiI	CAGNNNCTG	2 cut(s)	49, 338
CciI	TCATGA	1 cut(s)	441
Cfr13I	GGNCC	2 cut(s)	392, 696
Csp6I	GTAC	2 cut(s)	250, 491
CspCI	CAANNNNNGTGG	2 cut(s)	564, 599
CviAII	CATG	6 cut(s)	65, 82, 283, 383, 442, 556
CviQI	GTAC	2 cut(s)	250, 491
DdeI	CTNAG	3 cut(s)	261, 342, 410
DpnI	GATC	2 cut(s)	53, 276
DpnII	GATC	2 cut(s)	51, 274
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	243
Eco31I	GGTCTC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	243
FaeI	CATG	6 cut(s)	68, 85, 286, 386, 445, 559
FalI	AAGNNNNNCTT	4 cut(s)	417, 449, 629, 661
FaqI	GGGAC	3 cut(s)	122, 308, 474
FatI	CATG	6 cut(s)	64, 81, 282, 382, 441, 555
FauI	CCCGC	1 cut(s)	239
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	6 cut(s)	153, 219, 258, 339, 711, 714
FokI	GGATG	2 cut(s)	185, 584
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	6 cut(s)	153, 219, 258, 339, 711, 714
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	6 cut(s)	153, 219, 258, 339, 711, 714
GsuI	CTGGAG	1 cut(s)	485
HaeIII	GGCC	2 cut(s)	394, 698
HapII	CCGG	2 cut(s)	156, 165
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	6 cut(s)	68, 85, 286, 386, 445, 559
HinfI	GANTC	1 cut(s)	418
HpaII	CCGG	2 cut(s)	156, 165
HphI	GGTGA	2 cut(s)	124, 412
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	442, 667
HpyAV	CCTTC	2 cut(s)	673, 697
HpyCH4III	ACNGT	2 cut(s)	128, 136
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	6 cut(s)	29, 58, 500, 572, 590, 635
HpyF3I	CTNAG	3 cut(s)	261, 342, 410
HpySE526I	ACGT	1 cut(s)	105
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	6 cut(s)	68, 85, 286, 386, 445, 559
KpnI	GGTACC	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	51, 274
LmnI	GCTCC	1 cut(s)	185
Lsp1109I	GCAGC	3 cut(s)	244, 325, 700
LweI	GCATC	2 cut(s)	36, 599
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	3 cut(s)	101, 360, 641
MalI	GATC	2 cut(s)	53, 276
MboI	GATC	2 cut(s)	51, 274
MboII	GAAGA	1 cut(s)	80
MfeI	CAATTG	2 cut(s)	507, 567
MhlI	GDGCHC	4 cut(s)	243, 543, 656, 676
MluCI	AATT	4 cut(s)	449, 507, 525, 567
MroXI	GAANNNNTTC	1 cut(s)	77
MseI	TTAA	1 cut(s)	754
MslI	CAYNNNNRTG	2 cut(s)	63, 387
MspA1I	CMGCKG	2 cut(s)	221, 713
MspI	CCGG	2 cut(s)	156, 165
MspR9I	CCNGG	2 cut(s)	157, 430
MunI	CAATTG	2 cut(s)	507, 567
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	430
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	2 cut(s)	51, 274
NlaIII	CATG	6 cut(s)	68, 85, 286, 386, 445, 559
NlaIV	GGNNCC	4 cut(s)	251, 540, 655, 697
NmeAIII	GCCGAG	1 cut(s)	222
NmuCI	GTSAC	3 cut(s)	101, 360, 641
NspI	RCATGY	1 cut(s)	559
PagI	TCATGA	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PctI	GAATGC	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	418
PkrI	GCNGC	6 cut(s)	154, 220, 259, 340, 712, 715
Psp6I	CCWGG	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	4 cut(s)	251, 540, 655, 697
PspPI	GGNCC	2 cut(s)	392, 696
PstNI	CAGNNNCTG	2 cut(s)	49, 338
RsaI	GTAC	2 cut(s)	251, 492
RsaNI	GTAC	2 cut(s)	250, 491
RseI	CAYNNNNRTG	2 cut(s)	63, 387
SaqAI	TTAA	1 cut(s)	754
SatI	GCNGC	6 cut(s)	153, 219, 258, 339, 711, 714
Sau3AI	GATC	2 cut(s)	51, 274
Sau96I	GGNCC	2 cut(s)	392, 696
ScrFI	CCNGG	2 cut(s)	157, 430
SduI	GDGCHC	4 cut(s)	243, 543, 656, 676
SetI	ASST	5 cut(s)	108, 182, 255, 274, 348
SfaNI	GCATC	2 cut(s)	36, 599
SmiMI	CAYNNNNRTG	2 cut(s)	63, 387
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	4 cut(s)	449, 507, 525, 567
SsiI	CCGC	6 cut(s)	153, 170, 219, 246, 350, 711
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	155, 428
TaaI	ACNGT	2 cut(s)	128, 136
TaiI	ACGT	1 cut(s)	108
TasI	AATT	4 cut(s)	449, 507, 525, 567
TauI	GCSGC	3 cut(s)	155, 221, 713
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	1 cut(s)	754
Tru9I	TTAA	1 cut(s)	754
TseFI	GTSAC	3 cut(s)	101, 360, 641
TseI	GCWGC	3 cut(s)	257, 338, 713
Tsp45I	GTSAC	3 cut(s)	101, 360, 641
TspDTI	ATGAA	8 cut(s)	70, 81, 299, 324, 430, 461, 507, 679
XapI	RAATTY	1 cut(s)	449
XceI	RCATGY	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	77
XspI	CTAG	1 cut(s)	87
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.