Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000204.1

Orthogroup ID

OG0002581

Physical Location & Seq

Genomic Coordinates Reverse (-)

197999 .. 199528

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000204.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggggagtgatcgtgaaaatggttatggtgacttggagaagcagatgctggttcttcacgaacacgaagagaagcacttcatgtccagtgagattgtccgtgacgtcattctcggcgtctccgacggtctcactgtcccttttgcccttgccgcggggttgtccggcgctgacgtcagctcctccatcatcctcgttgccggcattgctgaggttgcggccggtgccatctccatgggacttggcgggtatcttgcggcgaagagcgaagaagatcattacaagaaagaactaaagagggagcaagatgaaatcatcgccgtccctgatatagaggctgctgaggttgcagaaatattgtcacaatatggggttgaagcacatgaatatgggcctgtggtgaatgctctaagaaggaaccctcaagcctggctcgatttcatgatgaaatttgaactaggactcgacaagccagacccaatgagagcactgcagagtgcaatgacaatagccttttcatacgtctgtggtggactggtgcctctccttccctacatgctcattccagttgccaccaaggcggtgcttgcatcagtggtggtcaccatagtggcattgctgatcttcggctttgcaaagggtcacttcaccggaactcaacctttcaagagcgctttccaaaccgccttgattggagccatcgcgtcagcagctgcttattccattgctaaactcttccaatcctaccactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

250

Amino Acids

26.78

Weight (kDa)

5.04

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01770
fragaria_vesca	FvH4_4g33340 FvH4_4g33340 FvH4_4g33340
malus_domestica	MD13G1018700.v1.1 MD16G1016500.v1.1 MD16G1016600.v1.1
prunus_persica	Prupe.1G335200_v2.0.a1 Prupe.1G335300_v2.0.a1
pyrus_communis	pycom16g01520 pycom16g01530
rosa_chinensis	RchiOBHm_Chr4g0442571 RchiOBHm_Chr4g0442581 RchiOBHm_Chr4g0442611
rosa_laevigata	RLG00000005999 RLG00000006000 RLG00000006001
rosa_multiflora	Rmu_sc0025219.1_g000002 Rmu_ssc0000204.1_g000037 Rmu_ssc0000204.1_g000042 Rmu_ssc0000204.1_g000044
rosa_roxburghii	Rroxscaffold_5G00383380 Rroxscaffold_5G00383390 Rroxscaffold_5G00383410
rosa_rugosa	Rorug04G0341300 Rorug04G0341400 Rorug04G0341400 Rorug04G0341400
rosa_samantha	Rh4AG393700 Rh4AG393800 Rh4AG394000 Rh4BG406800 Rh4BG406900 Rh4BG407000 Rh4CG422400 Rh4DG400700 Rh4DG401000
rosa_wichuraiana	Rw4G034020 Rw4G034030 Rw4G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	108, 177
AccB1I	GGYRCC	2 cut(s)	224, 538
AccII	CGCG	2 cut(s)	155, 704
AciI	CCGC	7 cut(s)	153, 155, 218, 246, 257, 581, 684
AcoI	YGGCCR	1 cut(s)	219
AcsI	RAATTY	1 cut(s)	449
AcyI	GRCGYC	3 cut(s)	105, 117, 174
AfeI	AGCGCT	1 cut(s)	673
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	3 cut(s)	377, 455, 667
AjnI	CCWGG	1 cut(s)	428
AleI	CACNNNNGTG	1 cut(s)	608
AluBI	AGCT	2 cut(s)	180, 713
AluI	AGCT	2 cut(s)	180, 713
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	2 cut(s)	124, 134
AlwNI	CAGNNNCTG	2 cut(s)	49, 713
Aor51HI	AGCGCT	1 cut(s)	673
AoxI	GGCC	2 cut(s)	219, 392
ApeKI	GCWGC	3 cut(s)	338, 710, 713
ApoI	RAATTY	1 cut(s)	449
Asp700I	GAANNNNTTC	1 cut(s)	77
AspLEI	GCGC	2 cut(s)	170, 674
AspS9I	GGNCC	1 cut(s)	392
AsuHPI	GGTGA	4 cut(s)	41, 412, 595, 640
BanI	GGYRCC	2 cut(s)	224, 538
Bbv12I	GWGCWC	1 cut(s)	490
BbvCI	CCTCAGC	2 cut(s)	210, 342
BbvI	GCAGC	3 cut(s)	325, 700, 722
BccI	CCATC	3 cut(s)	194, 236, 707
BceAI	ACGGC	1 cut(s)	305
BciT130I	CCWGG	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	124, 134
BfaI	CTAG	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	491
BfoI	RGCGCY	2 cut(s)	171, 675
BglI	GCCNNNNNGGC	1 cut(s)	578
BisI	GCNGC	6 cut(s)	153, 219, 258, 339, 711, 714
BlsI	GCNGC	6 cut(s)	154, 220, 259, 340, 712, 715
Bme1390I	CCNGG	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	4 cut(s)	226, 419, 540, 697
BmrFI	CCNGG	1 cut(s)	430
BmsI	GCATC	2 cut(s)	36, 599
Bpu10I	CCTNAGC	2 cut(s)	210, 342
BpuEI	CTTGAG	1 cut(s)	408
BsaHI	GRCGYC	3 cut(s)	105, 117, 174
BsaI	GGTCTC	1 cut(s)	134
BsaJI	CCNNGG	3 cut(s)	153, 234, 576
BsaWI	WCCGGW	1 cut(s)	650
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 164, 194
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse118I	RCCGGY	2 cut(s)	200, 221
Bse1I	ACTGG	3 cut(s)	87, 540, 566
Bse3DI	GCAATG	4 cut(s)	204, 507, 614, 723
BseBI	CCWGG	1 cut(s)	430
BseDI	CCNNGG	3 cut(s)	153, 234, 576
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	4 cut(s)	204, 507, 614, 723
BseMII	CTCAG	2 cut(s)	201, 333
BseNI	ACTGG	3 cut(s)	87, 540, 566
BseRI	GAGGAG	1 cut(s)	172
BseX3I	CGGCCG	1 cut(s)	219
BseXI	GCAGC	3 cut(s)	325, 700, 722
Bsh1236I	CGCG	2 cut(s)	155, 704
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	221, 394
BshNI	GGYRCC	2 cut(s)	224, 538
BsiEI	CGRYCG	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	490
BsiSI	CCGG	4 cut(s)	165, 201, 222, 651
BslFI	GGGAC	3 cut(s)	122, 252, 308
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	2 cut(s)	124, 134
BsmBI	CGTCTC	1 cut(s)	124
BsmFI	GGGAC	3 cut(s)	122, 252, 308
BsmI	GAATGC	1 cut(s)	409
BsnI	GGCC	2 cut(s)	221, 394
Bso31I	GGTCTC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp143I	GATC	3 cut(s)	10, 274, 621
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	7 cut(s)	153, 155, 218, 246, 257, 581, 684
BspANI	GGCC	2 cut(s)	221, 394
BspCNI	CTCAG	2 cut(s)	202, 334
BspFNI	CGCG	2 cut(s)	155, 704
BspHI	TCATGA	1 cut(s)	441
BspLI	GGNNCC	4 cut(s)	226, 419, 540, 697
BspMAI	CTGCAG	1 cut(s)	495
BspQI	GCTCTTC	1 cut(s)	257
BspT107I	GGYRCC	2 cut(s)	224, 538
BspTNI	GGTCTC	1 cut(s)	134
BsrDI	GCAATG	4 cut(s)	204, 507, 614, 723
BsrFI	RCCGGY	2 cut(s)	200, 221
BsrI	ACTGG	3 cut(s)	87, 540, 566
BssAI	RCCGGY	2 cut(s)	200, 221
BssECI	CCNNGG	3 cut(s)	153, 234, 576
BssMI	GATC	3 cut(s)	10, 274, 621
BssNI	GRCGYC	3 cut(s)	105, 117, 174
BssT1I	CCWWGG	2 cut(s)	234, 576
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	2 cut(s)	128, 136
Bst6I	CTCTTC	3 cut(s)	63, 257, 740
BstACI	GRCGYC	3 cut(s)	105, 117, 174
BstC8I	GCNNGC	2 cut(s)	202, 588
BstDEI	CTNAG	3 cut(s)	210, 342, 410
BstDSI	CCRYGG	2 cut(s)	153, 234
BstEII	GGTNACC	1 cut(s)	601
BstF5I	GGATG	1 cut(s)	189
BstFNI	CGCG	2 cut(s)	155, 704
BstH2I	RGCGCY	2 cut(s)	171, 675
BstHHI	GCGC	2 cut(s)	170, 674
BstKTI	GATC	3 cut(s)	13, 277, 624
BstMAI	GTCTC	2 cut(s)	124, 134
BstMBI	GATC	3 cut(s)	10, 274, 621
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	8 cut(s)	152, 206, 215, 224, 347, 578, 587, 710
BstNI	CCWGG	1 cut(s)	430
BstNSI	RCATGY	1 cut(s)	559
BstPI	GGTNACC	1 cut(s)	601
BstSCI	CCNGG	1 cut(s)	428
BstSFI	CTRYAG	1 cut(s)	491
BstUI	CGCG	2 cut(s)	155, 704
BstV1I	GCAGC	3 cut(s)	325, 700, 722
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstZI	CGGCCG	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	221, 394
BtgI	CCRYGG	2 cut(s)	153, 234
BtgZI	GCGATG	2 cut(s)	301, 685
BtsCI	GGATG	1 cut(s)	189
BtsI	GCAGTG	1 cut(s)	488
BtsIMutI	CAGTG	4 cut(s)	94, 132, 488, 600
Cac8I	GCNNGC	2 cut(s)	202, 588
CaiI	CAGNNNCTG	2 cut(s)	49, 713
CciI	TCATGA	1 cut(s)	441
CfoI	GCGC	2 cut(s)	170, 674
Cfr10I	RCCGGY	2 cut(s)	200, 221
Cfr13I	GGNCC	1 cut(s)	392
Cfr42I	CCGCGG	1 cut(s)	156
CseI	GACGC	2 cut(s)	106, 693
CviAII	CATG	5 cut(s)	82, 235, 383, 442, 556
DdeI	CTNAG	3 cut(s)	210, 342, 410
DpnI	GATC	3 cut(s)	12, 276, 623
DpnII	GATC	3 cut(s)	10, 274, 621
EaeI	YGGCCR	1 cut(s)	219
EagI	CGGCCG	1 cut(s)	219
Eam1104I	CTCTTC	3 cut(s)	63, 257, 740
EarI	CTCTTC	3 cut(s)	63, 257, 740
EclXI	CGGCCG	1 cut(s)	219
Eco130I	CCWWGG	2 cut(s)	234, 576
Eco31I	GGTCTC	1 cut(s)	134
Eco47III	AGCGCT	1 cut(s)	673
Eco52I	CGGCCG	1 cut(s)	219
Eco91I	GGTNACC	1 cut(s)	601
EcoO65I	GGTNACC	1 cut(s)	601
EcoRII	CCWGG	1 cut(s)	428
EcoT14I	CCWWGG	2 cut(s)	234, 576
ErhI	CCWWGG	2 cut(s)	234, 576
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	5 cut(s)	85, 238, 386, 445, 559
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FaqI	GGGAC	3 cut(s)	122, 252, 308
FatI	CATG	5 cut(s)	81, 234, 382, 441, 555
FauI	CCCGC	2 cut(s)	148, 239
Fnu4HI	GCNGC	6 cut(s)	153, 219, 258, 339, 711, 714
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	6 cut(s)	153, 219, 258, 339, 711, 714
FspBI	CTAG	1 cut(s)	458
GlaI	GCGC	2 cut(s)	169, 673
GluI	GCNGC	6 cut(s)	153, 219, 258, 339, 711, 714
HaeII	RGCGCY	2 cut(s)	171, 675
HaeIII	GGCC	2 cut(s)	221, 394
HapII	CCGG	4 cut(s)	165, 201, 222, 651
HgaI	GACGC	2 cut(s)	106, 693
HhaI	GCGC	2 cut(s)	170, 674
Hin1I	GRCGYC	3 cut(s)	105, 117, 174
Hin1II	CATG	5 cut(s)	85, 238, 386, 445, 559
Hin6I	GCGC	2 cut(s)	168, 672
HinP1I	GCGC	2 cut(s)	168, 672
HinfI	GANTC	1 cut(s)	462
HpaII	CCGG	4 cut(s)	165, 201, 222, 651
HphI	GGTGA	4 cut(s)	41, 412, 595, 640
Hpy166II	GTNNAC	1 cut(s)	533
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	4 cut(s)	14, 59, 442, 667
Hpy8I	GTNNAC	1 cut(s)	533
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	408, 557
HpyCH4III	ACNGT	2 cut(s)	128, 136
HpyCH4IV	ACGT	3 cut(s)	105, 174, 522
HpyCH4V	TGCA	5 cut(s)	350, 493, 500, 590, 635
HpyF10VI	GCNNNNNNNGC	8 cut(s)	152, 206, 215, 224, 347, 578, 587, 710
HpyF3I	CTNAG	3 cut(s)	210, 342, 410
HpySE526I	ACGT	3 cut(s)	105, 174, 522
Hsp92I	GRCGYC	3 cut(s)	105, 117, 174
Hsp92II	CATG	5 cut(s)	85, 238, 386, 445, 559
HspAI	GCGC	2 cut(s)	168, 672
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	3 cut(s)	10, 274, 621
LguI	GCTCTTC	1 cut(s)	257
LmnI	GCTCC	3 cut(s)	185, 301, 695
Lsp1109I	GCAGC	3 cut(s)	325, 700, 722
LweI	GCATC	2 cut(s)	36, 599
MaeI	CTAG	1 cut(s)	458
MaeII	ACGT	3 cut(s)	105, 174, 522
MaeIII	GTNAC	5 cut(s)	29, 101, 360, 601, 641
MalI	GATC	3 cut(s)	12, 276, 623
MboI	GATC	3 cut(s)	10, 274, 621
MboII	GAAGA	7 cut(s)	47, 80, 274, 281, 284, 616, 727
MhlI	GDGCHC	1 cut(s)	490
MluCI	AATT	1 cut(s)	449
MlyI	GAGTC	1 cut(s)	456
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	8 cut(s)	193, 203, 205, 291, 328, 337, 432, 552
MroNI	GCCGGC	1 cut(s)	200
MroXI	GAANNNNTTC	1 cut(s)	77
MslI	CAYNNNNRTG	3 cut(s)	233, 387, 608
MspA1I	CMGCKG	2 cut(s)	155, 713
MspI	CCGG	4 cut(s)	165, 201, 222, 651
MspR9I	CCNGG	1 cut(s)	430
Mva1269I	GAATGC	1 cut(s)	409
MvaI	CCWGG	1 cut(s)	430
MvnI	CGCG	2 cut(s)	155, 704
MwoI	GCNNNNNNNGC	8 cut(s)	152, 206, 215, 224, 347, 578, 587, 710
NaeI	GCCGGC	1 cut(s)	202
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	3 cut(s)	10, 274, 621
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	5 cut(s)	85, 238, 386, 445, 559
NlaIV	GGNNCC	4 cut(s)	226, 419, 540, 697
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	5 cut(s)	29, 101, 360, 601, 641
NspI	RCATGY	1 cut(s)	559
OliI	CACNNNNGTG	1 cut(s)	608
PagI	TCATGA	1 cut(s)	441
PciSI	GCTCTTC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PctI	GAATGC	1 cut(s)	409
PdiI	GCCGGC	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	77
PkrI	GCNGC	6 cut(s)	154, 220, 259, 340, 712, 715
PleI	GAGTC	1 cut(s)	456
PpsI	GAGTC	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	428
PspEI	GGTNACC	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	4 cut(s)	226, 419, 540, 697
PspPI	GGNCC	1 cut(s)	392
PstI	CTGCAG	1 cut(s)	495
PstNI	CAGNNNCTG	2 cut(s)	49, 713
PvuII	CAGCTG	1 cut(s)	713
RseI	CAYNNNNRTG	3 cut(s)	233, 387, 608
SacII	CCGCGG	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	257
SatI	GCNGC	6 cut(s)	153, 219, 258, 339, 711, 714
Sau3AI	GATC	3 cut(s)	10, 274, 621
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	1 cut(s)	490
SetI	ASST	8 cut(s)	108, 177, 182, 216, 348, 525, 664, 715
SfaNI	GCATC	2 cut(s)	36, 599
SfcI	CTRYAG	1 cut(s)	491
Sfr303I	CCGCGG	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	156
SmiMI	CAYNNNNRTG	3 cut(s)	233, 387, 608
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
Sse9I	AATT	1 cut(s)	449
SsiI	CCGC	7 cut(s)	153, 155, 218, 246, 257, 581, 684
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	1 cut(s)	428
StyI	CCWWGG	2 cut(s)	234, 576
TaaI	ACNGT	2 cut(s)	128, 136
TaiI	ACGT	3 cut(s)	108, 177, 525
TaqI	TCGA	2 cut(s)	435, 465
TasI	AATT	1 cut(s)	449
TauI	GCSGC	3 cut(s)	155, 221, 260
TscAI	CASTG	4 cut(s)	94, 139, 495, 600
TseFI	GTSAC	5 cut(s)	29, 101, 360, 601, 641
TseI	GCWGC	3 cut(s)	338, 710, 713
Tsp45I	GTSAC	5 cut(s)	29, 101, 360, 601, 641
TspDTI	ATGAA	6 cut(s)	70, 324, 399, 430, 461, 507
TspGWI	ACGGA	1 cut(s)	89
TspRI	CASTG	4 cut(s)	94, 139, 495, 600
XapI	RAATTY	1 cut(s)	449
XceI	RCATGY	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	77
XspI	CTAG	1 cut(s)	458
ZraI	GACGTC	2 cut(s)	106, 175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.