Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002581

Physical Location & Seq

Genomic Coordinates Forward (+)

55697951 .. 55699835

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG407000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTCATGAAGAGGCAAGAAACTTAGACTCTGAGAAGCAAAGGCTTCTCAGTCAGCACAAAGAGAAGCACTTCACCGCCGGCGAGATCGTCCGTGACATCATCATCGGCGTATCTGACGGCCTCACCGTCCCCTTCGCTCTCGCTGCCGGTCTCTCCGGTGCAAATGCCACGTCCTCGATTGTCCTAACCGCTGGAGTCGCCGAAGTCGCCGCCGGCGCCATCTCCATGGGACTTGGCGGATATCTTGCGGCGAAAAGCGAAGCGGATCACTATGTGAGGGAGTTAAGGAGAGAACAAGAAGAAATAGTCAATGTTCCGGATACAGAAGCGGCAGAGGTAGCAGAGATTCTTGCAGAGTATGGAATAGAGCACCATGAATATACACCAGTTGTGAATGCCCTGAGGAAGAACCCACAAGCTTGGCTTGATTTCATGATGAAGTTTGAACTGGGACTGGAAAAGCCAGATCCAAGGAGAGCACTGCACAGTGCACTGACGATTGCAATTTCTTACATTCTGGGTGGAGTGGTACCTTTGATTCCTTACATGTTCATTCCAAGGGCCAGAGAAGCACTGGCTGGGTCTGTAGTGTTAACTTTGGCGGCATTGCTAATATTTGGGTATGCCAAGGGCTACTTCACTGGTAGTAAACCCTTCAAGAGTGCCTTTCAGACTGCCCTCATCGGAGCCATTGCATCCTCCGCCGCCTTTGGCATGGCAAAGGCGATCCATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

246

Amino Acids

26.34

Weight (kDa)

5.91

Isoelectric Point (pI)

36.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	31 - 241	3.4e-74	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01770
fragaria_vesca	FvH4_4g33340 FvH4_4g33340 FvH4_4g33340
malus_domestica	MD13G1018700.v1.1 MD16G1016500.v1.1 MD16G1016600.v1.1
prunus_persica	Prupe.1G335200_v2.0.a1 Prupe.1G335300_v2.0.a1
pyrus_communis	pycom16g01520 pycom16g01530
rosa_chinensis	RchiOBHm_Chr4g0442571 RchiOBHm_Chr4g0442581 RchiOBHm_Chr4g0442611
rosa_laevigata	RLG00000005999 RLG00000006000 RLG00000006001
rosa_multiflora	Rmu_sc0025219.1_g000002 Rmu_ssc0000204.1_g000037 Rmu_ssc0000204.1_g000042 Rmu_ssc0000204.1_g000044
rosa_roxburghii	Rroxscaffold_5G00383380 Rroxscaffold_5G00383390 Rroxscaffold_5G00383410
rosa_rugosa	Rorug04G0341300 Rorug04G0341400 Rorug04G0341400 Rorug04G0341400
rosa_samantha	Rh4AG393700 Rh4AG393800 Rh4AG394000 Rh4BG406800 Rh4BG406900 Rh4BG407000 Rh4CG422400 Rh4DG400700 Rh4DG401000
rosa_wichuraiana	Rw4G034020 Rw4G034030 Rw4G034040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	532
AccB1I	GGYRCC	2 cut(s)	218, 532
AccIII	TCCGGA	1 cut(s)	319
AclWI	GGATC	3 cut(s)	276, 464, 724
AcyI	GRCGYC	1 cut(s)	219
AdeI	CACNNNGTG	1 cut(s)	277
AfaI	GTAC	1 cut(s)	534
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	2 cut(s)	449, 661
AjiI	CACGTC	1 cut(s)	174
AjuI	GAANNNNNNNTTGG	2 cut(s)	623, 655
AluBI	AGCT	1 cut(s)	422
AluI	AGCT	1 cut(s)	422
Alw21I	GWGCWC	3 cut(s)	375, 484, 496
Alw26I	GTCTC	1 cut(s)	158
Alw44I	GTGCAC	1 cut(s)	492
AlwI	GGATC	3 cut(s)	276, 464, 724
Aor13HI	TCCGGA	1 cut(s)	319
AoxI	GGCC	2 cut(s)	121, 564
ApaLI	GTGCAC	1 cut(s)	492
ApeKI	GCWGC	1 cut(s)	146
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
Asp700I	GAANNNNTTC	1 cut(s)	71
Asp718I	GGTACC	1 cut(s)	532
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	1 cut(s)	564
AsuHPI	GGTGA	2 cut(s)	67, 118
AxyI	CCTNAGG	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	496
BanI	GGYRCC	2 cut(s)	218, 532
Bbv12I	GWGCWC	3 cut(s)	375, 484, 496
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	136
BciVI	GTATCC	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	588
BfoI	RGCGCY	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	6 cut(s)	147, 213, 252, 333, 606, 708
BlsI	GCNGC	6 cut(s)	148, 214, 253, 334, 607, 709
BmgBI	CACGTC	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	564
BmiI	GGNNCC	3 cut(s)	220, 534, 691
BmrI	ACTGGG	1 cut(s)	461
BmsI	GCATC	1 cut(s)	707
BmuI	ACTGGG	1 cut(s)	461
BpmI	CTGGAG	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	4 cut(s)	228, 473, 560, 630
BsaWI	WCCGGW	2 cut(s)	158, 319
Bse118I	RCCGGY	3 cut(s)	80, 149, 215
Bse1I	ACTGG	5 cut(s)	389, 456, 462, 582, 649
Bse21I	CCTNAGG	1 cut(s)	404
Bse3DI	GCAATG	2 cut(s)	608, 693
BseAI	TCCGGA	1 cut(s)	319
BseDI	CCNNGG	4 cut(s)	228, 473, 560, 630
BseGI	GGATG	2 cut(s)	698, 733
BseMI	GCAATG	2 cut(s)	608, 693
BseMII	CTCAG	3 cut(s)	24, 64, 395
BseNI	ACTGG	5 cut(s)	389, 456, 462, 582, 649
BseSI	GKGCMC	1 cut(s)	496
BseXI	GCAGC	1 cut(s)	133
BseYI	CCCAGC	1 cut(s)	581
BsgI	GTGCAG	1 cut(s)	470
BshFI	GGCC	2 cut(s)	123, 566
BshNI	GGYRCC	2 cut(s)	218, 532
BsiHKAI	GWGCWC	3 cut(s)	375, 484, 496
BsiSI	CCGG	5 cut(s)	81, 150, 159, 216, 320
BslFI	GGGAC	3 cut(s)	116, 246, 468
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	3 cut(s)	116, 246, 468
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	2 cut(s)	123, 566
Bso31I	GGTCTC	1 cut(s)	158
Bsp1286I	GDGCHC	3 cut(s)	375, 484, 496
Bsp13I	TCCGGA	1 cut(s)	319
Bsp143I	GATC	4 cut(s)	87, 268, 469, 729
Bsp19I	CCATGG	1 cut(s)	228
BspANI	GGCC	2 cut(s)	123, 566
BspCNI	CTCAG	3 cut(s)	25, 63, 396
BspEI	TCCGGA	1 cut(s)	319
BspHI	TCATGA	2 cut(s)	7, 435
BspLI	GGNNCC	3 cut(s)	220, 534, 691
BspPI	GGATC	3 cut(s)	276, 464, 724
BspT107I	GGYRCC	2 cut(s)	218, 532
BspTNI	GGTCTC	1 cut(s)	158
BsrDI	GCAATG	2 cut(s)	608, 693
BsrFI	RCCGGY	3 cut(s)	80, 149, 215
BsrI	ACTGG	5 cut(s)	389, 456, 462, 582, 649
BssAI	RCCGGY	3 cut(s)	80, 149, 215
BssECI	CCNNGG	4 cut(s)	228, 473, 560, 630
BssMI	GATC	4 cut(s)	87, 268, 469, 729
BssNI	GRCGYC	1 cut(s)	219
BssT1I	CCWWGG	4 cut(s)	228, 473, 560, 630
Bst4CI	ACNGT	2 cut(s)	130, 491
Bst6I	CTCTTC	1 cut(s)	6
BstACI	GRCGYC	1 cut(s)	219
BstC8I	GCNNGC	2 cut(s)	82, 217
BstDEI	CTNAG	4 cut(s)	25, 33, 50, 404
BstDSI	CCRYGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	698, 733
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	4 cut(s)	90, 271, 472, 732
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	4 cut(s)	87, 268, 469, 729
BstMWI	GCNNNNNNNGC	7 cut(s)	146, 200, 209, 218, 341, 572, 704
BstNSI	RCATGY	1 cut(s)	553
BstSFI	CTRYAG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	496
BstV1I	GCAGC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	469
BstXI	CCANNNNNNTGG	2 cut(s)	229, 423
BstYI	RGATCY	1 cut(s)	469
Bsu36I	CCTNAGG	1 cut(s)	404
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	2 cut(s)	123, 566
BtgI	CCRYGG	1 cut(s)	228
BtrI	CACGTC	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	698, 733
BtsI	GCAGTG	1 cut(s)	482
BtsIMutI	CAGTG	5 cut(s)	482, 494, 496, 575, 642
Cac8I	GCNNGC	2 cut(s)	82, 217
CciI	TCATGA	2 cut(s)	7, 435
CfoI	GCGC	1 cut(s)	221
Cfr10I	RCCGGY	3 cut(s)	80, 149, 215
Cfr13I	GGNCC	1 cut(s)	564
Csp6I	GTAC	1 cut(s)	533
CviAII	CATG	7 cut(s)	8, 229, 377, 436, 550, 718, 738
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	4 cut(s)	25, 33, 50, 404
DinI	GGCGCC	1 cut(s)	220
DpnI	GATC	4 cut(s)	89, 270, 471, 731
DpnII	GATC	4 cut(s)	87, 268, 469, 729
DraIII	CACNNNGTG	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
EciI	GGCGGA	2 cut(s)	255, 694
Eco130I	CCWWGG	4 cut(s)	228, 473, 560, 630
Eco31I	GGTCTC	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	245
Eco81I	CCTNAGG	1 cut(s)	404
EcoRV	GATATC	1 cut(s)	245
EcoT14I	CCWWGG	4 cut(s)	228, 473, 560, 630
EgeI	GGCGCC	1 cut(s)	220
EheI	GGCGCC	1 cut(s)	220
ErhI	CCWWGG	4 cut(s)	228, 473, 560, 630
FaeI	CATG	7 cut(s)	11, 232, 380, 439, 553, 721, 741
FalI	AAGNNNNNCTT	6 cut(s)	411, 443, 623, 655, 653, 685
FaqI	GGGAC	3 cut(s)	116, 246, 468
FatI	CATG	7 cut(s)	7, 228, 376, 435, 549, 717, 737
Fnu4HI	GCNGC	6 cut(s)	147, 213, 252, 333, 606, 708
FokI	GGATG	2 cut(s)	685, 720
Fsp4HI	GCNGC	6 cut(s)	147, 213, 252, 333, 606, 708
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	6 cut(s)	147, 213, 252, 333, 606, 708
GsaI	CCCAGC	1 cut(s)	585
GsuI	CTGGAG	1 cut(s)	216
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	2 cut(s)	123, 566
HapII	CCGG	5 cut(s)	81, 150, 159, 216, 320
HhaI	GCGC	1 cut(s)	221
Hin1I	GRCGYC	1 cut(s)	219
Hin1II	CATG	7 cut(s)	11, 232, 380, 439, 553, 721, 741
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HincII	GTYRAC	1 cut(s)	597
HindII	GTYRAC	1 cut(s)	597
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	4 cut(s)	29, 198, 349, 541
HpaI	GTTAAC	1 cut(s)	597
HpaII	CCGG	5 cut(s)	81, 150, 159, 216, 320
HphI	GGTGA	2 cut(s)	67, 118
Hpy166II	GTNNAC	3 cut(s)	494, 597, 653
Hpy188I	TCNGA	4 cut(s)	34, 118, 675, 689
Hpy188III	TCNNGA	4 cut(s)	8, 320, 436, 661
Hpy8I	GTNNAC	3 cut(s)	494, 597, 653
HpyAV	CCTTC	2 cut(s)	145, 667
HpyCH4III	ACNGT	2 cut(s)	130, 491
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	6 cut(s)	164, 356, 487, 494, 506, 698
HpyF10VI	GCNNNNNNNGC	7 cut(s)	146, 200, 209, 218, 341, 572, 704
HpyF3I	CTNAG	4 cut(s)	25, 33, 50, 404
HpySE526I	ACGT	1 cut(s)	173
Hsp92I	GRCGYC	1 cut(s)	219
Hsp92II	CATG	7 cut(s)	11, 232, 380, 439, 553, 721, 741
HspAI	GCGC	1 cut(s)	219
KasI	GGCGCC	1 cut(s)	218
Kpn2I	TCCGGA	1 cut(s)	319
KpnI	GGTACC	1 cut(s)	536
KroI	GCCGGC	2 cut(s)	80, 215
KroNI	GCCGGC	2 cut(s)	82, 217
KspAI	GTTAAC	1 cut(s)	597
Kzo9I	GATC	4 cut(s)	87, 268, 469, 729
LmnI	GCTCC	1 cut(s)	689
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	707
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	4 cut(s)	89, 270, 471, 731
MboI	GATC	4 cut(s)	87, 268, 469, 729
MboII	GAAGA	3 cut(s)	23, 314, 421
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	3 cut(s)	375, 484, 496
MluCI	AATT	1 cut(s)	507
Mly113I	GGCGCC	1 cut(s)	219
MlyI	GAGTC	2 cut(s)	23, 207
MnlI	CCTC	8 cut(s)	7, 134, 187, 273, 331, 399, 692, 712
MreI	CGCCGGCG	2 cut(s)	80, 215
MroI	TCCGGA	1 cut(s)	319
MroNI	GCCGGC	2 cut(s)	80, 215
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	2 cut(s)	287, 596
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	5 cut(s)	81, 150, 159, 216, 320
Mva1269I	GAATGC	1 cut(s)	403
MwoI	GCNNNNNNNGC	7 cut(s)	146, 200, 209, 218, 341, 572, 704
NaeI	GCCGGC	2 cut(s)	82, 217
NarI	GGCGCC	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	4 cut(s)	87, 268, 469, 729
NgoMIV	GCCGGC	2 cut(s)	80, 215
NlaIII	CATG	7 cut(s)	11, 232, 380, 439, 553, 721, 741
NlaIV	GGNNCC	3 cut(s)	220, 534, 691
NmuCI	GTSAC	1 cut(s)	95
NspI	RCATGY	1 cut(s)	553
PagI	TCATGA	2 cut(s)	7, 435
PciI	ACATGT	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PctI	GAATGC	1 cut(s)	403
PdiI	GCCGGC	2 cut(s)	82, 217
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	349, 541
PkrI	GCNGC	6 cut(s)	148, 214, 253, 334, 607, 709
PleI	GAGTC	2 cut(s)	23, 206
PluTI	GGCGCC	1 cut(s)	222
PpsI	GAGTC	2 cut(s)	23, 206
PscI	ACATGT	1 cut(s)	549
PspFI	CCCAGC	1 cut(s)	581
PspN4I	GGNNCC	3 cut(s)	220, 534, 691
PspPI	GGNCC	1 cut(s)	564
PsuI	RGATCY	1 cut(s)	469
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	287, 596
SatI	GCNGC	6 cut(s)	147, 213, 252, 333, 606, 708
Sau3AI	GATC	4 cut(s)	87, 268, 469, 729
Sau96I	GGNCC	1 cut(s)	564
SchI	GAGTC	2 cut(s)	23, 207
SduI	GDGCHC	3 cut(s)	375, 484, 496
SetI	ASST	4 cut(s)	176, 342, 424, 538
SfaNI	GCATC	1 cut(s)	707
SfcI	CTRYAG	1 cut(s)	588
SfoI	GGCGCC	1 cut(s)	220
SgrAI	CRCCGGYG	2 cut(s)	80, 215
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	507
SspDI	GGCGCC	1 cut(s)	218
SspI	AATATT	1 cut(s)	618
StyI	CCWWGG	4 cut(s)	228, 473, 560, 630
TaaI	ACNGT	2 cut(s)	130, 491
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	179
TasI	AATT	1 cut(s)	507
TauI	GCSGC	5 cut(s)	215, 254, 335, 608, 710
TfiI	GAWTC	2 cut(s)	349, 541
Tru1I	TTAA	2 cut(s)	287, 596
Tru9I	TTAA	2 cut(s)	287, 596
TscAI	CASTG	5 cut(s)	489, 496, 501, 582, 649
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	5 cut(s)	24, 393, 424, 455, 544
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	5 cut(s)	489, 496, 501, 582, 649
VneI	GTGCAC	1 cut(s)	492
XceI	RCATGY	1 cut(s)	553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XmnI	GAANNNNTTC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.