Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002581

Physical Location & Seq

Genomic Coordinates Forward (+)

1243044 .. 1245822

Gene Structure 2779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1016600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCTAATGACGGACAAACGAACAGCTTAGACCGCGAGAAGCAAGCACTGCTGAATAAGCACACCGAGAAGCACTTCACCGCCGGCGAGATCGTCCGGGACATCATCATCGGCGTATCCGACGGTCTTACCGTGCCGTTCGCTCTCGCTGCGGGACTGTCCGGCGCCAATGCCACGTCATCTATCGTCCTCACTGCTGGCATCGCCGAAGTCGCCGCCGGTGCCATCTCCATGGGACTCGGCGGATATCTGGCCGCAAAAAGTGAATCGGATCACTATTTGAGGGAGCTGAGGAGAGAACAAGAAGAAATTGTAAACGTTCCCGATACAGAGGCGGCGGAAGTGGCGGAGATACTGGCGGAGTATGGAATAGAGCCGCATGAGTATACACCGGTTGTGAATGCTCTAAGGAAGAAGCCCCAAGCATGGCTCGACTTCATGATGAAGTTTGAACTGGGATTGGAAAAGCCGGATCCAAGGAGAGCCTTGCACAGCGCCCTCACCATTGCCGTTGCTTACGTTTTGGGTGGAGCAGTACCCTTGCTTCCTTACGTCTTCTTTCCGAGGGCCAGGGAAGCTCTGGTTGCGTCGATTGTCGTGACCTTGCTGGCGTTGCTGATCTTCGGGTACGCCAAGGGCCGCTTCACCGATAACAAACCCTTCCGGAGTGCCTTCCAGACTGCGCTCATCGGAGCCATAGCATCCGCAGCTGCGTTTGGCTTGGCAAAGGCCATCCATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005381 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006828 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0008324 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015318 GO:0016020 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0034220 GO:0034755 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0051716 GO:0055065 GO:0055071 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071421 GO:0097577 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VIT1

Protein Analysis

248

Amino Acids

26.41

Weight (kDa)

5.89

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	32 - 242	1.9e-75	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002581)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01770
fragaria_vesca	FvH4_4g33340 FvH4_4g33340 FvH4_4g33340
malus_domestica	MD13G1018700.v1.1 MD16G1016500.v1.1 MD16G1016600.v1.1
prunus_persica	Prupe.1G335200_v2.0.a1 Prupe.1G335300_v2.0.a1
pyrus_communis	pycom16g01520 pycom16g01530
rosa_chinensis	RchiOBHm_Chr4g0442571 RchiOBHm_Chr4g0442581 RchiOBHm_Chr4g0442611
rosa_laevigata	RLG00000005999 RLG00000006000 RLG00000006001
rosa_multiflora	Rmu_sc0025219.1_g000002 Rmu_ssc0000204.1_g000037 Rmu_ssc0000204.1_g000042 Rmu_ssc0000204.1_g000044
rosa_roxburghii	Rroxscaffold_5G00383380 Rroxscaffold_5G00383390 Rroxscaffold_5G00383410
rosa_rugosa	Rorug04G0341300 Rorug04G0341400 Rorug04G0341400 Rorug04G0341400
rosa_samantha	Rh4AG393700 Rh4AG393800 Rh4AG394000 Rh4BG406800 Rh4BG406900 Rh4BG407000 Rh4CG422400 Rh4DG400700 Rh4DG401000
rosa_wichuraiana	Rw4G034020 Rw4G034030 Rw4G034040

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	164, 221
AccI	GTMKAC	1 cut(s)	386
AccII	CGCG	1 cut(s)	36
AccIII	TCCGGA	1 cut(s)	663
AclI	AACGTT	1 cut(s)	318
AclWI	GGATC	3 cut(s)	279, 467, 480
AcoI	YGGCCR	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	2 cut(s)	537, 629
AfiI	CCNNNNNNNGG	1 cut(s)	426
AgeI	ACCGGT	1 cut(s)	391
AgsI	TTSAA	1 cut(s)	452
AjiI	CACGTC	1 cut(s)	177
AjnI	CCWGG	1 cut(s)	569
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AluBI	AGCT	4 cut(s)	27, 289, 578, 710
AluI	AGCT	4 cut(s)	27, 289, 578, 710
AlwI	GGATC	3 cut(s)	279, 467, 480
Aor13HI	TCCGGA	1 cut(s)	663
AoxI	GGCC	4 cut(s)	252, 567, 637, 729
ApeKI	GCWGC	3 cut(s)	149, 707, 710
AsiGI	ACCGGT	1 cut(s)	391
Asp700I	GAANNNNTTC	1 cut(s)	74
AspLEI	GCGC	3 cut(s)	167, 497, 685
AspS9I	GGNCC	2 cut(s)	567, 637
AsuC2I	CCSGG	1 cut(s)	98
AsuHPI	GGTGA	3 cut(s)	70, 493, 637
BamHI	GGATCC	1 cut(s)	472
BanI	GGYRCC	2 cut(s)	164, 221
BarI	GAAGNNNNNNTAC	2 cut(s)	528, 560
BbsI	GAAGAC	1 cut(s)	547
BbvCI	CCTCAGC	1 cut(s)	290
BbvI	GCAGC	3 cut(s)	136, 697, 719
BccI	CCATC	2 cut(s)	233, 740
BceAI	ACGGC	2 cut(s)	121, 494
BciT130I	CCWGG	1 cut(s)	571
BciVI	GTATCC	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	98
BfoI	RGCGCY	2 cut(s)	168, 498
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	8 cut(s)	150, 216, 255, 336, 377, 640, 708, 711
BlsI	GCNGC	8 cut(s)	151, 217, 256, 337, 378, 641, 709, 712
Bme1390I	CCNGG	2 cut(s)	98, 571
BmgBI	CACGTC	1 cut(s)	177
BmgT120I	GGNCC	2 cut(s)	567, 637
BmiI	GGNNCC	4 cut(s)	166, 223, 474, 694
BmrFI	CCNGG	2 cut(s)	98, 571
BmrI	ACTGGG	1 cut(s)	464
BmsI	GCATC	2 cut(s)	210, 710
BmuI	ACTGGG	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	547
Bpu10I	CCTNAGC	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	98
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	5 cut(s)	231, 476, 563, 570, 633
BsaWI	WCCGGW	2 cut(s)	391, 663
Bsc4I	CCNNNNNNNGG	1 cut(s)	426
Bse118I	RCCGGY	3 cut(s)	83, 218, 391
Bse1I	ACTGG	2 cut(s)	360, 459
Bse3DI	GCAATG	1 cut(s)	504
BseAI	TCCGGA	1 cut(s)	663
BseBI	CCWGG	1 cut(s)	571
BseDI	CCNNGG	5 cut(s)	231, 476, 563, 570, 633
BseGI	GGATG	3 cut(s)	701, 732, 736
BseLI	CCNNNNNNNGG	1 cut(s)	426
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	2 cut(s)	360, 459
BseRI	GAGGAG	1 cut(s)	307
BseXI	GCAGC	3 cut(s)	136, 697, 719
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	4 cut(s)	254, 569, 639, 731
BshNI	GGYRCC	2 cut(s)	164, 221
BshTI	ACCGGT	1 cut(s)	391
BsiSI	CCGG	7 cut(s)	84, 97, 162, 219, 392, 470, 664
BslFI	GGGAC	3 cut(s)	113, 168, 249
BslI	CCNNNNNNNGG	1 cut(s)	426
BsmFI	GGGAC	3 cut(s)	113, 168, 249
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	4 cut(s)	254, 569, 639, 731
Bsp13I	TCCGGA	1 cut(s)	663
Bsp143I	GATC	4 cut(s)	90, 271, 472, 618
Bsp19I	CCATGG	1 cut(s)	231
BspANI	GGCC	4 cut(s)	254, 569, 639, 731
BspCNI	CTCAG	1 cut(s)	282
BspEI	TCCGGA	1 cut(s)	663
BspFNI	CGCG	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	438
BspLI	GGNNCC	4 cut(s)	166, 223, 474, 694
BspPI	GGATC	3 cut(s)	279, 467, 480
BspT107I	GGYRCC	2 cut(s)	164, 221
BsrDI	GCAATG	1 cut(s)	504
BsrFI	RCCGGY	3 cut(s)	83, 218, 391
BsrI	ACTGG	2 cut(s)	360, 459
BssAI	RCCGGY	3 cut(s)	83, 218, 391
BssECI	CCNNGG	5 cut(s)	231, 476, 563, 570, 633
BssMI	GATC	4 cut(s)	90, 271, 472, 618
BssNAI	GTATAC	1 cut(s)	387
BssNI	GRCGYC	1 cut(s)	165
BssT1I	CCWWGG	3 cut(s)	231, 476, 633
Bst1107I	GTATAC	1 cut(s)	387
Bst2UI	CCWGG	1 cut(s)	571
Bst4CI	ACNGT	3 cut(s)	125, 133, 159
BstACI	GRCGYC	1 cut(s)	165
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstC8I	GCNNGC	4 cut(s)	45, 85, 199, 609
BstDEI	CTNAG	3 cut(s)	28, 290, 407
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	3 cut(s)	701, 732, 736
BstFNI	CGCG	1 cut(s)	36
BstH2I	RGCGCY	2 cut(s)	168, 498
BstHHI	GCGC	3 cut(s)	167, 497, 685
BstKTI	GATC	4 cut(s)	93, 274, 475, 621
BstMBI	GATC	4 cut(s)	90, 271, 472, 618
BstNI	CCWGG	1 cut(s)	571
BstSCI	CCNGG	2 cut(s)	96, 569
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	3 cut(s)	136, 697, 719
BstV2I	GAAGAC	1 cut(s)	547
BstX2I	RGATCY	1 cut(s)	472
BstXI	CCANNNNNNTGG	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	472
BstZ17I	GTATAC	1 cut(s)	387
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	4 cut(s)	254, 569, 639, 731
BtgI	CCRYGG	1 cut(s)	231
BtgZI	GCGATG	1 cut(s)	187
BtrI	CACGTC	1 cut(s)	177
BtsCI	GGATG	3 cut(s)	701, 732, 736
BtsI	GCAGTG	2 cut(s)	47, 192
BtsIMutI	CAGTG	2 cut(s)	47, 192
Cac8I	GCNNGC	4 cut(s)	45, 85, 199, 609
CciI	TCATGA	1 cut(s)	438
CfoI	GCGC	3 cut(s)	167, 497, 685
Cfr10I	RCCGGY	3 cut(s)	83, 218, 391
Cfr13I	GGNCC	2 cut(s)	567, 637
CseI	GACGC	1 cut(s)	576
Csp6I	GTAC	2 cut(s)	536, 628
CspAI	ACCGGT	1 cut(s)	391
CviAII	CATG	5 cut(s)	232, 380, 426, 439, 741
CviQI	GTAC	2 cut(s)	536, 628
DdeI	CTNAG	3 cut(s)	28, 290, 407
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	4 cut(s)	92, 273, 474, 620
DpnII	GATC	4 cut(s)	90, 271, 472, 618
EaeI	YGGCCR	1 cut(s)	252
EciI	GGCGGA	4 cut(s)	258, 353, 362, 374
Eco130I	CCWWGG	3 cut(s)	231, 476, 633
Eco32I	GATATC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	569
EcoRV	GATATC	1 cut(s)	248
EcoT14I	CCWWGG	3 cut(s)	231, 476, 633
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
ErhI	CCWWGG	3 cut(s)	231, 476, 633
FaeI	CATG	5 cut(s)	235, 383, 429, 442, 744
FaiI	YATR	8 cut(s)	233, 366, 381, 387, 427, 440, 698, 742
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FaqI	GGGAC	3 cut(s)	113, 168, 249
FatI	CATG	5 cut(s)	231, 379, 425, 438, 740
FauI	CCCGC	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	386
Fnu4HI	GCNGC	8 cut(s)	150, 216, 255, 336, 377, 640, 708, 711
FokI	GGATG	3 cut(s)	688, 719, 723
Fsp4HI	GCNGC	8 cut(s)	150, 216, 255, 336, 377, 640, 708, 711
GlaI	GCGC	3 cut(s)	166, 496, 684
GluI	GCNGC	8 cut(s)	150, 216, 255, 336, 377, 640, 708, 711
HaeII	RGCGCY	2 cut(s)	168, 498
HaeIII	GGCC	4 cut(s)	254, 569, 639, 731
HapII	CCGG	7 cut(s)	84, 97, 162, 219, 392, 470, 664
HgaI	GACGC	1 cut(s)	576
HhaI	GCGC	3 cut(s)	167, 497, 685
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	5 cut(s)	235, 383, 429, 442, 744
Hin6I	GCGC	3 cut(s)	165, 495, 683
HinP1I	GCGC	3 cut(s)	165, 495, 683
HinfI	GANTC	2 cut(s)	237, 266
HpaII	CCGG	7 cut(s)	84, 97, 162, 219, 392, 470, 664
HphI	GGTGA	3 cut(s)	70, 493, 637
Hpy166II	GTNNAC	2 cut(s)	316, 387
Hpy188I	TCNGA	4 cut(s)	121, 271, 564, 692
Hpy188III	TCNNGA	5 cut(s)	323, 439, 598, 664, 676
Hpy8I	GTNNAC	2 cut(s)	316, 387
Hpy99I	CGWCG	2 cut(s)	125, 592
HpyAV	CCTTC	2 cut(s)	670, 682
HpyCH4III	ACNGT	3 cut(s)	125, 133, 159
HpyCH4IV	ACGT	4 cut(s)	176, 318, 519, 552
HpyCH4V	TGCA	1 cut(s)	490
HpyF3I	CTNAG	3 cut(s)	28, 290, 407
HpySE526I	ACGT	4 cut(s)	176, 318, 519, 552
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	5 cut(s)	235, 383, 429, 442, 744
HspAI	GCGC	3 cut(s)	165, 495, 683
KasI	GGCGCC	1 cut(s)	164
Kpn2I	TCCGGA	1 cut(s)	663
KroI	GCCGGC	1 cut(s)	83
KroNI	GCCGGC	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	90, 271, 472, 618
LmnI	GCTCC	3 cut(s)	286, 530, 692
Lsp1109I	GCAGC	3 cut(s)	136, 697, 719
LweI	GCATC	2 cut(s)	210, 710
MaeII	ACGT	4 cut(s)	176, 318, 519, 552
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	4 cut(s)	92, 273, 474, 620
MboI	GATC	4 cut(s)	90, 271, 472, 618
MboII	GAAGA	4 cut(s)	317, 424, 547, 613
MflI	RGATCY	1 cut(s)	472
MluCI	AATT	1 cut(s)	309
Mly113I	GGCGCC	1 cut(s)	165
MlyI	GAGTC	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	6 cut(s)	200, 276, 285, 325, 509, 558
MreI	CGCCGGCG	1 cut(s)	83
MroI	TCCGGA	1 cut(s)	663
MroNI	GCCGGC	1 cut(s)	83
MroXI	GAANNNNTTC	1 cut(s)	74
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	710
MspI	CCGG	7 cut(s)	84, 97, 162, 219, 392, 470, 664
MspR9I	CCNGG	2 cut(s)	98, 571
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	1 cut(s)	571
MvnI	CGCG	1 cut(s)	36
NaeI	GCCGGC	1 cut(s)	85
NarI	GGCGCC	1 cut(s)	165
NciI	CCSGG	1 cut(s)	98
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	4 cut(s)	90, 271, 472, 618
NgoMIV	GCCGGC	1 cut(s)	83
NlaIII	CATG	5 cut(s)	235, 383, 429, 442, 744
NlaIV	GGNNCC	4 cut(s)	166, 223, 474, 694
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	1 cut(s)	598
PagI	TCATGA	1 cut(s)	438
PcsI	WCGNNNNNNNCGW	2 cut(s)	117, 129
PctI	GAATGC	1 cut(s)	406
PdiI	GCCGGC	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	1 cut(s)	266
PfoI	TCCNGGA	1 cut(s)	96
PinAI	ACCGGT	1 cut(s)	391
PkrI	GCNGC	8 cut(s)	151, 217, 256, 337, 378, 641, 709, 712
PleI	GAGTC	1 cut(s)	231
PluTI	GGCGCC	1 cut(s)	168
PpsI	GAGTC	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	569
PspN4I	GGNNCC	4 cut(s)	166, 223, 474, 694
PspPI	GGNCC	2 cut(s)	567, 637
PsuI	RGATCY	1 cut(s)	472
PvuII	CAGCTG	1 cut(s)	710
RsaI	GTAC	2 cut(s)	537, 629
RsaNI	GTAC	2 cut(s)	536, 628
RseI	CAYNNNNRTG	1 cut(s)	230
SatI	GCNGC	8 cut(s)	150, 216, 255, 336, 377, 640, 708, 711
Sau3AI	GATC	4 cut(s)	90, 271, 472, 618
Sau96I	GGNCC	2 cut(s)	567, 637
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	2 cut(s)	98, 571
SetI	ASST	9 cut(s)	29, 179, 291, 321, 522, 555, 580, 605, 712
SfaNI	GCATC	2 cut(s)	210, 710
SfoI	GGCGCC	1 cut(s)	166
SgrAI	CRCCGGYG	2 cut(s)	83, 218
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	1 cut(s)	309
SspDI	GGCGCC	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	96, 569
StyI	CCWWGG	3 cut(s)	231, 476, 633
TaaI	ACNGT	3 cut(s)	125, 133, 159
TaiI	ACGT	4 cut(s)	179, 321, 522, 555
TaqI	TCGA	2 cut(s)	432, 590
TasI	AATT	1 cut(s)	309
TauI	GCSGC	5 cut(s)	218, 257, 338, 379, 642
TfiI	GAWTC	1 cut(s)	266
TscAI	CASTG	2 cut(s)	54, 199
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	3 cut(s)	149, 707, 710
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	2 cut(s)	427, 458
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	2 cut(s)	54, 199
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XmiI	GTMKAC	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.