Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012430

Physical Location & Seq

Genomic Coordinates Reverse (-)

31601651 .. 31604719

Gene Structure 3069 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33360.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGTGAGAAAATCCAAGGAGAAGGAGAAGACCGGAGAAGGGTCGAGCTCCGCCGAAGCATCGGTGGCTCCGTTTCTGAAAAAATGTTACGAGATGGTCGACGACGAAGAAACGGACTCTATAATCTCGTGGAGTGAGAGCAATGACAGCTTTGTGATCAAGGACGTGACCCAGTTCTCGGTTATGATGCTCCCCAAGTATTTCAAGCACAGCAACTTTTCCAGCTTCATGAGGCAGCTCAATATCTATGGCTTTAGAAAAATAGATCCGGATCATTATGTATTTGCAAACGAAGGATTTATTCGAGGTCAAAAGCATTTGTTGAAGAATATTTTCAGAAGGAAATATCCGCAGGGCACAGATCAGAGAAAAACATTGCAGCAGAAAGATGATCAGAAACATGATCCTGATGAACCTTGTGAAGACATTGAAAATGGTCTGTGGAGGGAAGTTGAGAACCTGAAGATCGATAAGATCTCTCTAAAGCAAGAGTTGGTGAAGCTTAGGCAGCACCAGGAAATGTCAGAAAACAACTTGCTCCTCCTGAGAAACCGCCTTCATGGAATGGAGAAGGATCAACAGCAGATGCTCTCATTTTTGGTGATGGCGATGCAAAATCCTGGGTTTTTAGTTCAGCTGGTTCAGTCAAAAGAACATAGCTGGCGCTTGGCTGAAGCTGGAACTATGCTAGAAGAAGTAGATGATGGTAGACCAATGGCTGCTGATGGTGCCATAGTGCGGTACCGACCTCCTATGGAGGAAGCACCGAAGCATGTCTTCTCATCAGATTCGAGTTTAGAGATTCAACCAGAATTAGATTCTTTTGTGAATTCCAATGGTGTAATAGTAAGGTACCAACCACCTGTGGATGAAGCGCCAGCTGTATTCCAACCGGAGAAACAACCAGATGGAGTGGAAGATTCTTTTATGAATTCAGATGGTGCATTAGTAAGGTACCGATCACCTATGGATGCAGCAGTGAAGCCTATACTCACACAGAGTTCAGGCTCAGGGAAACAGCCAGAGCTTGATTCTTTCCCTGATGGGATGAAAGATATTTTTGGGAATTCTGATTTTGTGAAAATGCTAATGGATGATAAATTGAGCCCTCGAGAAAATCATGCCCAGTTTATCCTGCCTGATGCTGATGTTGATGATAATTCATGGGAGAAGCTGCTTTTGACTAGTTATTGGTTAGAAAATAATCAAAATATTGAAGGTGCAAAGGAAGAAAGAAAAGAGCCCGATGATTCTAGAATGGAGGTTGAATCAACAGCAGCCAAGTTGAATGAATCCAGAAATTTTGATTCTTTAATAGAACAAATGGACAAATCAGTTCATCAGAATTTGGAATTCATTAGTGAACATCCGAGACACATGGCTTCCGACCCCGACAAGAAACCAGAAACACAGTCGGGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

475

Amino Acids

54.45

Weight (kDa)

4.99

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012430)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67970
fragaria_vesca	FvH4_4g33360 FvH4_4g33360
malus_domestica	MD13G1018800.v1.1 MD16G1016700.v1.1
prunus_persica	Prupe.1G335100_v2.0.a1
pyrus_communis	pycom13g01590
rosa_chinensis	RchiOBHm_Chr4g0442621
rosa_laevigata	RLG00000005998
rosa_multiflora	Rmu_co8503207.1_g000002 Rmu_sc0025219.1_g000001 Rmu_ssc0000204.1_g000036
rosa_roxburghii	Rroxscaffold_5G00383420
rosa_rugosa	Rorug04G0341400
rosa_samantha	Rh4AG394100 Rh4BG407100 Rh4CG422500 Rh4DG401100
rosa_wichuraiana	Rw4G034050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	3 cut(s)	741, 852, 954
AccB1I	GGYRCC	4 cut(s)	728, 741, 852, 954
AccI	GTMKAC	2 cut(s)	99, 709
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	4 cut(s)	51, 350, 553, 739
AclWI	GGATC	4 cut(s)	260, 279, 398, 582
AcsI	RAATTY	6 cut(s)	829, 931, 1066, 1300, 1345, 1352
AcuI	CTGAAG	2 cut(s)	482, 693
AfaI	GTAC	3 cut(s)	743, 854, 956
AfiI	CCNNNNNNNGG	3 cut(s)	39, 178, 738
AgsI	TTSAA	7 cut(s)	205, 325, 431, 806, 1217, 1268, 1288
AhlI	ACTAGT	1 cut(s)	1184
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	513, 619
Alw21I	GWGCWC	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	1366
AlwI	GGATC	4 cut(s)	260, 279, 398, 582
Ama87I	CYCGRG	1 cut(s)	1110
Aor13HI	TCCGGA	1 cut(s)	268
ApeKI	GCWGC	7 cut(s)	235, 379, 508, 719, 974, 1174, 1277
ApoI	RAATTY	6 cut(s)	829, 931, 1066, 1300, 1345, 1352
Asp700I	GAANNNNTTC	1 cut(s)	332
Asp718I	GGTACC	3 cut(s)	741, 852, 954
AspLEI	GCGC	2 cut(s)	666, 877
AsuHPI	GGTGA	4 cut(s)	16, 508, 613, 954
AvaI	CYCGRG	1 cut(s)	1110
BaeGI	GKGCMC	1 cut(s)	359
BanI	GGYRCC	4 cut(s)	728, 741, 852, 954
BanII	GRGCYC	3 cut(s)	50, 1109, 1245
BauI	CACGAG	1 cut(s)	127
BbsI	GAAGAC	3 cut(s)	35, 429, 769
Bbv12I	GWGCWC	1 cut(s)	50
BbvI	GCAGC	7 cut(s)	247, 391, 520, 706, 986, 1161, 1289
BccI	CCATC	7 cut(s)	88, 598, 698, 719, 902, 932, 1037
BciT130I	CCWGG	2 cut(s)	515, 621
BclI	TGATCA	2 cut(s)	156, 391
BcoDI	GTCTC	1 cut(s)	1366
BcuI	ACTAGT	1 cut(s)	1184
BfaI	CTAG	3 cut(s)	689, 1185, 1254
BfoI	RGCGCY	2 cut(s)	667, 878
BglII	AGATCT	1 cut(s)	474
BisI	GCNGC	7 cut(s)	236, 380, 509, 720, 975, 1175, 1278
BlsI	GCNGC	7 cut(s)	237, 381, 510, 721, 976, 1176, 1279
Bme1390I	CCNGG	2 cut(s)	515, 621
BmeT110I	CYCGRG	1 cut(s)	1110
BmgBI	CACGTC	1 cut(s)	166
BmiI	GGNNCC	5 cut(s)	69, 730, 743, 854, 956
BmrFI	CCNGG	2 cut(s)	515, 621
BmrI	ACTGGG	2 cut(s)	166, 1120
BmsI	GCATC	6 cut(s)	68, 177, 576, 600, 961, 1132
BmuI	ACTGGG	2 cut(s)	166, 1120
BpiI	GAAGAC	3 cut(s)	35, 429, 769
Bpu10I	CCTNAGC	2 cut(s)	503, 1009
Bsa29I	ATCGAT	1 cut(s)	468
BsaBI	GATNNNNATC	1 cut(s)	270
BsaJI	CCNNGG	2 cut(s)	15, 620
BsaWI	WCCGGW	3 cut(s)	32, 268, 892
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 178, 738
Bse1I	ACTGG	2 cut(s)	172, 1126
Bse3DI	GCAATG	2 cut(s)	148, 374
Bse8I	GATNNNNATC	1 cut(s)	270
BseAI	TCCGGA	1 cut(s)	268
BseBI	CCWGG	2 cut(s)	515, 621
BseCI	ATCGAT	1 cut(s)	468
BseDI	CCNNGG	2 cut(s)	15, 620
BseGI	GGATG	5 cut(s)	874, 976, 1053, 1099, 1366
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	3 cut(s)	39, 178, 738
BseMI	GCAATG	2 cut(s)	148, 374
BseMII	CTCAG	2 cut(s)	536, 1023
BseNI	ACTGG	2 cut(s)	172, 1126
BseRI	GAGGAG	1 cut(s)	530
BseSI	GKGCMC	1 cut(s)	359
BseXI	GCAGC	7 cut(s)	247, 391, 520, 706, 986, 1161, 1289
BshNI	GGYRCC	4 cut(s)	728, 741, 852, 954
BshVI	ATCGAT	1 cut(s)	468
BsiHKAI	GWGCWC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	1110
BsiSI	CCGG	3 cut(s)	33, 269, 893
BslI	CCNNNNNNNGG	3 cut(s)	39, 178, 738
BsmAI	GTCTC	1 cut(s)	1366
BsoBI	CYCGRG	1 cut(s)	1110
Bsp1286I	GDGCHC	4 cut(s)	50, 359, 1109, 1245
Bsp13I	TCCGGA	1 cut(s)	268
BspACI	CCGC	4 cut(s)	51, 350, 553, 739
BspCNI	CTCAG	2 cut(s)	537, 1022
BspDI	ATCGAT	1 cut(s)	468
BspEI	TCCGGA	1 cut(s)	268
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	5 cut(s)	69, 730, 743, 854, 956
BspPI	GGATC	4 cut(s)	260, 279, 398, 582
BspT107I	GGYRCC	4 cut(s)	728, 741, 852, 954
BsrDI	GCAATG	2 cut(s)	148, 374
BsrI	ACTGG	2 cut(s)	172, 1126
BssECI	CCNNGG	2 cut(s)	15, 620
BssSI	CACGAG	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	15
Bst2BI	CACGAG	1 cut(s)	127
Bst2UI	CCWGG	2 cut(s)	515, 621
Bst4CI	ACNGT	1 cut(s)	1413
BstC8I	GCNNGC	2 cut(s)	662, 879
BstDEI	CTNAG	3 cut(s)	503, 545, 1009
BstF5I	GGATG	5 cut(s)	874, 976, 1053, 1099, 1366
BstH2I	RGCGCY	2 cut(s)	667, 878
BstHHI	GCGC	2 cut(s)	666, 877
BstMAI	GTCTC	1 cut(s)	1366
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 147, 508, 728
BstNI	CCWGG	2 cut(s)	515, 621
BstNSI	RCATGY	1 cut(s)	776
BstSCI	CCNGG	2 cut(s)	513, 619
BstSLI	GKGCMC	1 cut(s)	359
BstV1I	GCAGC	7 cut(s)	247, 391, 520, 706, 986, 1161, 1289
BstV2I	GAAGAC	3 cut(s)	35, 429, 769
BstX2I	RGATCY	2 cut(s)	265, 474
BstYI	RGATCY	2 cut(s)	265, 474
Bsu15I	ATCGAT	1 cut(s)	468
BsuTUI	ATCGAT	1 cut(s)	468
BtgZI	GCGATG	1 cut(s)	623
BtrI	CACGTC	1 cut(s)	166
BtsCI	GGATG	5 cut(s)	874, 976, 1053, 1099, 1366
BtsI	GCAGTG	1 cut(s)	984
BtsIMutI	CAGTG	1 cut(s)	984
Cac8I	GCNNGC	2 cut(s)	662, 879
CciI	TCATGA	1 cut(s)	228
CfoI	GCGC	2 cut(s)	666, 877
ClaI	ATCGAT	1 cut(s)	468
Csp6I	GTAC	3 cut(s)	742, 853, 955
CviAII	CATG	7 cut(s)	229, 401, 560, 773, 1121, 1164, 1378
CviQI	GTAC	3 cut(s)	742, 853, 955
DdeI	CTNAG	3 cut(s)	503, 545, 1009
EciI	GGCGGA	1 cut(s)	40
Ecl136II	GAGCTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	3 cut(s)	50, 1109, 1245
Eco53kI	GAGCTC	1 cut(s)	48
Eco57I	CTGAAG	2 cut(s)	482, 693
Eco88I	CYCGRG	1 cut(s)	1110
EcoICRI	GAGCTC	1 cut(s)	48
EcoRI	GAATTC	4 cut(s)	829, 931, 1066, 1352
EcoRII	CCWGG	2 cut(s)	513, 619
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	3 cut(s)	50, 1109, 1245
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	7 cut(s)	232, 404, 563, 776, 1124, 1167, 1381
FalI	AAGNNNNNCTT	2 cut(s)	761, 793
FatI	CATG	7 cut(s)	228, 400, 559, 772, 1120, 1163, 1377
FbaI	TGATCA	2 cut(s)	156, 391
FblI	GTMKAC	2 cut(s)	99, 709
Fnu4HI	GCNGC	7 cut(s)	236, 380, 509, 720, 975, 1175, 1278
FokI	GGATG	5 cut(s)	881, 983, 1060, 1106, 1353
FriOI	GRGCYC	3 cut(s)	50, 1109, 1245
Fsp4HI	GCNGC	7 cut(s)	236, 380, 509, 720, 975, 1175, 1278
FspBI	CTAG	3 cut(s)	689, 1185, 1254
GlaI	GCGC	2 cut(s)	665, 876
GluI	GCNGC	7 cut(s)	236, 380, 509, 720, 975, 1175, 1278
HaeII	RGCGCY	2 cut(s)	667, 878
HapII	CCGG	3 cut(s)	33, 269, 893
HhaI	GCGC	2 cut(s)	666, 877
Hin1II	CATG	7 cut(s)	232, 404, 563, 776, 1124, 1167, 1381
Hin6I	GCGC	2 cut(s)	664, 875
HinP1I	GCGC	2 cut(s)	664, 875
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	500
HpaII	CCGG	3 cut(s)	33, 269, 893
HphI	GGTGA	4 cut(s)	16, 508, 613, 954
Hpy166II	GTNNAC	3 cut(s)	100, 710, 1364
Hpy188III	TCNNGA	8 cut(s)	229, 269, 407, 544, 1112, 1254, 1296, 1416
Hpy8I	GTNNAC	3 cut(s)	100, 710, 1364
Hpy99I	CGWCG	2 cut(s)	104, 107
HpyAV	CCTTC	7 cut(s)	16, 32, 287, 333, 565, 566, 1211
HpyCH4III	ACNGT	1 cut(s)	1413
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	6 cut(s)	287, 379, 613, 944, 974, 1223
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 147, 508, 728
HpyF3I	CTNAG	3 cut(s)	503, 545, 1009
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	7 cut(s)	232, 404, 563, 776, 1124, 1167, 1381
HspAI	GCGC	2 cut(s)	664, 875
Kpn2I	TCCGGA	1 cut(s)	268
KpnI	GGTACC	3 cut(s)	745, 856, 958
Ksp22I	TGATCA	2 cut(s)	156, 391
LmnI	GCTCC	4 cut(s)	53, 73, 195, 543
Lsp1109I	GCAGC	7 cut(s)	247, 391, 520, 706, 986, 1161, 1289
LweI	GCATC	6 cut(s)	68, 177, 576, 600, 961, 1132
MaeI	CTAG	3 cut(s)	689, 1185, 1254
MaeII	ACGT	1 cut(s)	165
MaeIII	GTNAC	2 cut(s)	86, 166
MboII	GAAGA	9 cut(s)	40, 119, 337, 434, 475, 704, 769, 929, 1241
MflI	RGATCY	2 cut(s)	265, 474
MhlI	GDGCHC	4 cut(s)	50, 359, 1109, 1245
MluCI	AATT	9 cut(s)	812, 829, 931, 1066, 1100, 1159, 1300, 1345, 1352
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	2 cut(s)	913, 1410
MnlI	CCTC	8 cut(s)	225, 299, 438, 551, 751, 759, 1119, 1255
MroI	TCCGGA	1 cut(s)	268
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	1 cut(s)	1313
MspA1I	CMGCKG	2 cut(s)	637, 881
MspI	CCGG	3 cut(s)	33, 269, 893
MspR9I	CCNGG	2 cut(s)	515, 621
MvaI	CCWGG	2 cut(s)	515, 621
MwoI	GCNNNNNNNGC	4 cut(s)	65, 147, 508, 728
NlaIII	CATG	7 cut(s)	232, 404, 563, 776, 1124, 1167, 1381
NlaIV	GGNNCC	5 cut(s)	69, 730, 743, 854, 956
NmuCI	GTSAC	1 cut(s)	166
NspI	RCATGY	1 cut(s)	776
PaeR7I	CTCGAG	1 cut(s)	1110
PagI	TCATGA	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	2 cut(s)	68, 96
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	9 cut(s)	788, 802, 818, 920, 1031, 1250, 1268, 1292, 1307
PkrI	GCNGC	7 cut(s)	237, 381, 510, 721, 976, 1176, 1279
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
Psp124BI	GAGCTC	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	513, 619
PspGI	CCWGG	2 cut(s)	513, 619
PspN4I	GGNNCC	5 cut(s)	69, 730, 743, 854, 956
PsuI	RGATCY	2 cut(s)	265, 474
PvuII	CAGCTG	2 cut(s)	637, 881
RsaI	GTAC	3 cut(s)	743, 854, 956
RsaNI	GTAC	3 cut(s)	742, 853, 955
SacI	GAGCTC	1 cut(s)	50
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	1313
SatI	GCNGC	7 cut(s)	236, 380, 509, 720, 975, 1175, 1278
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	515, 621
SduI	GDGCHC	4 cut(s)	50, 359, 1109, 1245
SfaNI	GCATC	6 cut(s)	68, 177, 576, 600, 961, 1132
Sfr274I	CTCGAG	1 cut(s)	1110
SlaI	CTCGAG	1 cut(s)	1110
SmlI	CTYRAG	1 cut(s)	1110
SmoI	CTYRAG	1 cut(s)	1110
SpeI	ACTAGT	1 cut(s)	1184
Sse9I	AATT	9 cut(s)	812, 829, 931, 1066, 1100, 1159, 1300, 1345, 1352
SsiI	CCGC	4 cut(s)	51, 350, 553, 739
SspI	AATATT	2 cut(s)	331, 1213
SspMI	CTAG	3 cut(s)	689, 1185, 1254
SstI	GAGCTC	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	513, 619
StyI	CCWWGG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	1413
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	6 cut(s)	44, 99, 304, 468, 791, 1111
TasI	AATT	9 cut(s)	812, 829, 931, 1066, 1100, 1159, 1300, 1345, 1352
TfiI	GAWTC	9 cut(s)	788, 802, 818, 920, 1031, 1250, 1268, 1292, 1307
Tru1I	TTAA	1 cut(s)	1313
Tru9I	TTAA	1 cut(s)	1313
TscAI	CASTG	1 cut(s)	984
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	7 cut(s)	235, 379, 508, 719, 974, 1174, 1277
Tsp45I	GTSAC	1 cut(s)	166
TspGWI	ACGGA	2 cut(s)	60, 128
TspRI	CASTG	1 cut(s)	984
XapI	RAATTY	6 cut(s)	829, 931, 1066, 1300, 1345, 1352
XbaI	TCTAGA	1 cut(s)	1253
XceI	RCATGY	1 cut(s)	776
XhoI	CTCGAG	1 cut(s)	1110
XmiI	GTMKAC	2 cut(s)	99, 709
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	3 cut(s)	689, 1185, 1254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.