AT1G68320
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006759
Physical Location & Seq
Forward (+)
25603676 .. 25605181
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68320.1

Sequence Viewer

Length: 861 bp
ATGGAAAATTCGATGAAGAAGAAGAAGAGCTTCAAAGAAAGTGAAGATGAAGAACTAAGAAGAGGGCCTTGGACTTTGGAGGAAGACACACTTCTCACAAATTACATCCTCCATAACGGTGAGGGTCGTTGGAATCACGTCGCCAAATGTGCTGGGCTAAAGAGAACTGGGAAAAGTTGTAGATTGAGATGGTTGAATTACTTGAAACCCGACATAAGACGAGGGAATCTTACTCCTCAAGAACAGCTTTTGATCCTTGAGCTTCACTCTAAATGGGGTAATAGGTGGTCCAAGATTGCACAGTACTTGCCAGGAAGAACGGATAACGAGATCAAGAACTATTGGAGAACAAGAGTTCAAAAACAAGCTCGTCAACTCAACATCGAATCTAACAGCGACAAGTTCTTTGACGCTGTTCGTAGTTTTTGGGTCCCTAGATTGATCGAGAAGATGGAACAAAACTCATCCACTACTACTACTTATTGTTGTCCCCAAAACAACAACAACAACTCTCTTCTTCTTCCTTCTCAATCTCACGACTCTTTAAGTATGCAAAAAGATATAGATTACTCGGGTTTCAGCAACATAGACGGTTCTTCTTCAACTTCTACTTGCATGTCTCATCTAACAACAGTTCCACACTTTATGGATCAAAGCAACACCAATATCATCGATGGCTCGATGTGTTTCCATGAAGGCAATGTTCAAGAATTCGGAGGATATGTTCCTGGCATGGAGGATTACATGGTAAACTCGGACATCTCAATGGAATGTCACGTGGCGGATGGTTATTCAGCGTACGAGGATGTTACACAAGATCCCATGTGGAATGTGGATGACATTTGGCAGTTTAGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009267 GO:0009605 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010371 GO:0010373 GO:0010468 GO:0010476 GO:0010556 GO:0010558 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0014070 GO:0016036 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0045892 GO:0045934 GO:0046394 GO:0046677 GO:0046885 GO:0046890 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060255 GO:0061458 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

286

Amino Acids

33.24

Weight (kDa)

5.67

Isoelectric Point (pI)

57.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 21 - 68 1.6e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 24 - 81 9e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 74 - 117 3.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 78 - 125 2.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 782
AclWI GGATC 3 cut(s) 247, 657, 812
AcsI RAATTY 2 cut(s) 7, 710
AcvI CACGTG 1 cut(s) 778
AfaI GTAC 2 cut(s) 305, 800
AgsI TTSAA 6 cut(s) 34, 196, 205, 359, 603, 707
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 2 cut(s) 310, 727
AjuI GAANNNNNNNTTGG 2 cut(s) 52, 84
AloI GAACNNNNNNTCC 2 cut(s) 708, 740
AluBI AGCT 4 cut(s) 30, 247, 262, 368
AluI AGCT 4 cut(s) 30, 247, 262, 368
Alw26I GTCTC 1 cut(s) 624
AlwI GGATC 3 cut(s) 247, 657, 812
Ama87I CYCGRG 1 cut(s) 571
AoxI GGCC 1 cut(s) 65
ApoI RAATTY 2 cut(s) 7, 710
ArsI GACNNNNNNTTYG 2 cut(s) 389, 421
Asp700I GAANNNNTTC 1 cut(s) 29
AspS9I GGNCC 3 cut(s) 65, 288, 430
AsuHPI GGTGA 1 cut(s) 131
AvaI CYCGRG 1 cut(s) 571
AvaII GGWCC 2 cut(s) 288, 430
BbrPI CACGTG 1 cut(s) 778
BbsI GAAGAC 1 cut(s) 90
BccI CCATC 4 cut(s) 183, 445, 668, 779
BciT130I CCWGG 2 cut(s) 312, 729
BcoDI GTCTC 1 cut(s) 624
BfaI CTAG 1 cut(s) 435
BmcAI AGTACT 1 cut(s) 305
Bme1390I CCNGG 2 cut(s) 312, 729
Bme18I GGWCC 2 cut(s) 288, 430
BmeT110I CYCGRG 1 cut(s) 571
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 3 cut(s) 65, 288, 430
BmiI GGNNCC 2 cut(s) 431, 432
BmrFI CCNGG 2 cut(s) 312, 729
BmrI ACTGGG 1 cut(s) 177
BmuI ACTGGG 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 90
BplI GAGNNNNNCTC 2 cut(s) 251, 283
BpuEI CTTGAG 2 cut(s) 222, 278
Bsa29I ATCGAT 1 cut(s) 672
BsaAI YACGTR 1 cut(s) 778
BsaJI CCNNGG 1 cut(s) 68
BsaXI ACNNNNNCTCC 2 cut(s) 708, 738
Bse1I ACTGG 1 cut(s) 172
Bse3DI GCAATG 1 cut(s) 706
BseBI CCWGG 2 cut(s) 312, 729
BseCI ATCGAT 1 cut(s) 672
BseDI CCNNGG 1 cut(s) 68
BseGI GGATG 5 cut(s) 105, 464, 790, 811, 841
BseMI GCAATG 1 cut(s) 706
BseNI ACTGG 1 cut(s) 172
BseRI GAGGAG 1 cut(s) 225
BseYI CCCAGC 1 cut(s) 152
BshFI GGCC 1 cut(s) 67
BshVI ATCGAT 1 cut(s) 672
BsiHKCI CYCGRG 1 cut(s) 571
BsiWI CGTACG 1 cut(s) 798
BslFI GGGAC 2 cut(s) 416, 474
BsmAI GTCTC 1 cut(s) 624
BsmFI GGGAC 2 cut(s) 416, 474
BsnI GGCC 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 571
Bsp143I GATC 5 cut(s) 252, 330, 441, 649, 817
BspACI CCGC 1 cut(s) 782
BspANI GGCC 1 cut(s) 67
BspDI ATCGAT 1 cut(s) 672
BspLI GGNNCC 2 cut(s) 431, 432
BspPI GGATC 3 cut(s) 247, 657, 812
BspQI GCTCTTC 1 cut(s) 20
BsrDI GCAATG 1 cut(s) 706
BsrI ACTGG 1 cut(s) 172
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 5 cut(s) 252, 330, 441, 649, 817
BssT1I CCWWGG 1 cut(s) 68
Bst2UI CCWGG 2 cut(s) 312, 729
Bst4CI ACNGT 4 cut(s) 119, 303, 593, 634
Bst6I CTCTTC 3 cut(s) 20, 55, 519
BstBAI YACGTR 1 cut(s) 778
BstDEI CTNAG 1 cut(s) 56
BstF5I GGATG 5 cut(s) 105, 464, 790, 811, 841
BstKTI GATC 5 cut(s) 255, 333, 444, 652, 820
BstMAI GTCTC 1 cut(s) 624
BstMBI GATC 5 cut(s) 252, 330, 441, 649, 817
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNI CCWGG 2 cut(s) 312, 729
BstNSI RCATGY 1 cut(s) 619
BstSCI CCNGG 2 cut(s) 310, 727
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 817
BstYI RGATCY 1 cut(s) 817
Bsu15I ATCGAT 1 cut(s) 672
BsuRI GGCC 1 cut(s) 67
BsuTUI ATCGAT 1 cut(s) 672
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 5 cut(s) 105, 464, 790, 811, 841
Cfr13I GGNCC 3 cut(s) 65, 288, 430
ClaI ATCGAT 1 cut(s) 672
CseI GACGC 1 cut(s) 419
Csp6I GTAC 2 cut(s) 304, 799
CviAII CATG 5 cut(s) 616, 692, 733, 745, 823
CviJI RGCY 7 cut(s) 30, 67, 157, 247, 262, 368, 678
CviKI_1 RGCY 7 cut(s) 30, 67, 157, 247, 262, 368, 678
CviQI GTAC 2 cut(s) 304, 799
DdeI CTNAG 1 cut(s) 56
DpnI GATC 5 cut(s) 254, 332, 443, 651, 819
DpnII GATC 5 cut(s) 252, 330, 441, 649, 817
Eam1104I CTCTTC 3 cut(s) 20, 55, 519
EarI CTCTTC 3 cut(s) 20, 55, 519
EciI GGCGGA 1 cut(s) 797
Eco130I CCWWGG 1 cut(s) 68
Eco47I GGWCC 2 cut(s) 288, 430
Eco72I CACGTG 1 cut(s) 778
Eco88I CYCGRG 1 cut(s) 571
EcoO109I RGGNCCY 2 cut(s) 65, 430
EcoRI GAATTC 1 cut(s) 710
EcoRII CCWGG 2 cut(s) 310, 727
EcoT14I CCWWGG 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 5 cut(s) 619, 695, 736, 748, 826
FalI AAGNNNNNCTT 8 cut(s) 14, 46, 52, 84, 75, 107, 231, 263
FaqI GGGAC 2 cut(s) 416, 474
FatI CATG 5 cut(s) 615, 691, 732, 744, 822
FokI GGATG 5 cut(s) 92, 451, 797, 818, 848
FspBI CTAG 1 cut(s) 435
GsaI CCCAGC 1 cut(s) 156
HaeIII GGCC 1 cut(s) 67
HgaI GACGC 1 cut(s) 419
Hin1II CATG 5 cut(s) 619, 695, 736, 748, 826
HincII GTYRAC 1 cut(s) 374
HindII GTYRAC 1 cut(s) 374
HinfI GANTC 4 cut(s) 133, 226, 386, 539
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 2 cut(s) 374, 751
Hpy188I TCNGA 2 cut(s) 716, 757
Hpy188III TCNNGA 5 cut(s) 239, 334, 445, 536, 707
Hpy8I GTNNAC 2 cut(s) 374, 751
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 534, 689
HpyCH4III ACNGT 4 cut(s) 119, 303, 593, 634
HpyCH4IV ACGT 2 cut(s) 138, 777
HpyCH4V TGCA 3 cut(s) 299, 553, 615
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 56
HpySE526I ACGT 2 cut(s) 138, 777
Hsp92II CATG 5 cut(s) 619, 695, 736, 748, 826
KflI GGGWCCC 1 cut(s) 430
Kzo9I GATC 5 cut(s) 252, 330, 441, 649, 817
LguI GCTCTTC 1 cut(s) 20
LpnPI CCDG 6 cut(s) 138, 153, 297, 324, 714, 741
MaeI CTAG 1 cut(s) 435
MaeII ACGT 2 cut(s) 138, 777
MaeIII GTNAC 2 cut(s) 773, 808
MalI GATC 5 cut(s) 254, 332, 443, 651, 819
MboI GATC 5 cut(s) 252, 330, 441, 649, 817
MflI RGATCY 1 cut(s) 817
MluCI AATT 4 cut(s) 7, 100, 196, 710
MlyI GAGTC 1 cut(s) 533
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 9 cut(s) 56, 73, 115, 119, 215, 246, 710, 730, 796
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 1 cut(s) 545
MslI CAYNNNNRTG 2 cut(s) 117, 764
MspR9I CCNGG 2 cut(s) 312, 729
MvaI CCWGG 2 cut(s) 312, 729
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeII GATC 5 cut(s) 252, 330, 441, 649, 817
NlaIII CATG 5 cut(s) 619, 695, 736, 748, 826
NlaIV GGNNCC 2 cut(s) 431, 432
NmuCI GTSAC 1 cut(s) 773
NspI RCATGY 1 cut(s) 619
PciSI GCTCTTC 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 3 cut(s) 133, 226, 386
Pfl23II CGTACG 1 cut(s) 798
PleI GAGTC 1 cut(s) 533
PmaCI CACGTG 1 cut(s) 778
PmlI CACGTG 1 cut(s) 778
PpsI GAGTC 1 cut(s) 533
Ppu21I YACGTR 1 cut(s) 778
PpuMI RGGWCCY 1 cut(s) 430
Psp5II RGGWCCY 1 cut(s) 430
Psp6I CCWGG 2 cut(s) 310, 727
PspCI CACGTG 1 cut(s) 778
PspFI CCCAGC 1 cut(s) 152
PspGI CCWGG 2 cut(s) 310, 727
PspLI CGTACG 1 cut(s) 798
PspN4I GGNNCC 2 cut(s) 431, 432
PspPI GGNCC 3 cut(s) 65, 288, 430
PspPPI RGGWCCY 1 cut(s) 430
PsuI RGATCY 1 cut(s) 817
RsaI GTAC 2 cut(s) 305, 800
RsaNI GTAC 2 cut(s) 304, 799
RseI CAYNNNNRTG 2 cut(s) 117, 764
SapI GCTCTTC 1 cut(s) 20
SaqAI TTAA 1 cut(s) 545
Sau3AI GATC 5 cut(s) 252, 330, 441, 649, 817
Sau96I GGNCC 3 cut(s) 65, 288, 430
ScaI AGTACT 1 cut(s) 305
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 2 cut(s) 312, 729
SetI ASST 7 cut(s) 32, 141, 249, 264, 287, 370, 780
SinI GGWCC 2 cut(s) 288, 430
SmiMI CAYNNNNRTG 2 cut(s) 117, 764
SmlI CTYRAG 2 cut(s) 237, 257
SmoI CTYRAG 2 cut(s) 237, 257
Sse9I AATT 4 cut(s) 7, 100, 196, 710
SsiI CCGC 1 cut(s) 782
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 2 cut(s) 310, 727
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 4 cut(s) 119, 303, 593, 634
TaiI ACGT 2 cut(s) 141, 780
TaqI TCGA 5 cut(s) 11, 384, 444, 672, 680
TasI AATT 4 cut(s) 7, 100, 196, 710
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 3 cut(s) 133, 226, 386
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TseFI GTSAC 1 cut(s) 773
Tsp45I GTSAC 1 cut(s) 773
TspDTI ATGAA 3 cut(s) 29, 63, 708
TspGWI ACGGA 1 cut(s) 335
VpaK11BI GGWCC 2 cut(s) 288, 430
XapI RAATTY 2 cut(s) 7, 710
XceI RCATGY 1 cut(s) 619
XcmI CCANNNNNNNNNTGG 1 cut(s) 829
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 1 cut(s) 435
ZrmI AGTACT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.