Rroxscaffold_7G00200590
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006759
Physical Location & Seq
Forward (+)
47962932 .. 47964158
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00200590.1

Sequence Viewer

Length: 882 bp
ATGGCTGGTGTTGCAAACAGTGTGTGCACAAGTCCTAATGAAGAAGAGAATGAGCTGAGAAAAGGGCCATGGACGCTTGACGAAGACACCCTGCTCATAAATTACATTGCCAACCACGGCGAAGGCCATTGGAATGCCTTAGCAAAATGTGCAGGATTGAAGAGGACAGGAAAAAGCTGCAGATTGAGGTGGCTTAATTATCTGAAACCCGACATCAAGCATGGGAACCTTACTCCACAAGAACAACTCTTGATCCTTGAACTCCATTTCAAGTGGGGTAACAGGTGGTCAAAAATAGCGCAACATTTGCCAGGAAGAACAGACAATGAGATTAAGACCTACTGGAGAACAAGGGTGCAGAAACAGGCGCGCCAACTTAATATTGAGTCTAATAGCAAGAGGTTTCTTGATGCGGTTCGATGTTTCTGGATGCCGACTTTGAGTCAGAAGATGGAGCAAACTTCTTCACTTAGTTTAGACCCTTCTTCTTCTTCTTCTCTAAGTAATTCACAAATCTTTGTAGCTCCTTCTCTGTCTCCTCAAACTTACTCAGTTTCTTCTTCTCCACCAAGCAAGGTGGTCTCACACGTATCTGATTATTCCCCAATTGGAAATTCAAGCCCAAGTCATAATAGTCTTTCCTCGGATTCTCTTATTTCACAGCTGCCTCAAATTCAAGAACAACCAGCAAGTTCATTCCATGCCTTTGAAGCTCTAAATGACAATTATTATGTGGCCTATGACATGGAGGGTTTTAGCTTTGACCCTGTTTCAGAAATGGCCTCTTTTGACACTTCACAGTTTGATTGCCAGAAGGCAGAAAGTGATTGGATACCAGACAATTATATGACTGACACTTTATGGAGCATGCACGGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009267 GO:0009605 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010371 GO:0010373 GO:0010468 GO:0010476 GO:0010556 GO:0010558 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0014070 GO:0016036 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0045892 GO:0045934 GO:0046394 GO:0046677 GO:0046885 GO:0046890 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060255 GO:0061458 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

293

Amino Acids

33.09

Weight (kDa)

5.71

Isoelectric Point (pI)

62.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 21 - 68 8.7e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 24 - 81 5.8e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 75 - 117 1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 78 - 124 2.5e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 370
AciI CCGC 1 cut(s) 413
AclWI GGATC 1 cut(s) 247
AcsI RAATTY 2 cut(s) 613, 672
AflIII ACRYGT 1 cut(s) 586
AgsI TTSAA 6 cut(s) 160, 260, 271, 618, 677, 710
AhdI GACNNNNNGTC 1 cut(s) 441
AjnI CCWGG 1 cut(s) 310
AjuI GAANNNNNNNTTGG 2 cut(s) 598, 630
AluBI AGCT 6 cut(s) 55, 177, 524, 664, 713, 759
AluI AGCT 6 cut(s) 55, 177, 524, 664, 713, 759
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 2 cut(s) 540, 586
Alw44I GTGCAC 1 cut(s) 25
AlwI GGATC 1 cut(s) 247
AoxI GGCC 4 cut(s) 65, 124, 735, 780
ApaLI GTGCAC 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 177, 664
ApoI RAATTY 2 cut(s) 613, 672
AscI GGCGCGCC 1 cut(s) 368
AspLEI GCGC 3 cut(s) 301, 370, 372
AspS9I GGNCC 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 2 cut(s) 164, 651
BccI CCATC 1 cut(s) 445
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 312
BciVI GTATCC 1 cut(s) 825
BcoDI GTCTC 2 cut(s) 540, 586
BfmI CTRYAG 1 cut(s) 178
BfuI GTATCC 1 cut(s) 825
BisI GCNGC 2 cut(s) 178, 665
BlsI GCNGC 2 cut(s) 179, 666
Bme1390I CCNGG 1 cut(s) 312
BmeRI GACNNNNNGTC 1 cut(s) 441
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 2 cut(s) 400, 420
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 364
Bpu10I CCTNAGC 1 cut(s) 139
BsaAI YACGTR 1 cut(s) 589
BsaI GGTCTC 1 cut(s) 586
BsaJI CCNNGG 3 cut(s) 68, 115, 642
Bse1I ACTGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 68, 115, 642
BseGI GGATG 2 cut(s) 435, 882
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 47, 564
BseNI ACTGG 1 cut(s) 347
BsePI GCGCGC 1 cut(s) 368
BseRI GAGGAG 1 cut(s) 528
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 2 cut(s) 164, 651
BsgI GTGCAG 2 cut(s) 171, 377
Bsh1236I CGCG 1 cut(s) 370
BshFI GGCC 4 cut(s) 67, 126, 737, 782
BsiHKAI GWGCWC 1 cut(s) 29
BsmAI GTCTC 2 cut(s) 540, 586
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 4 cut(s) 67, 126, 737, 782
Bso31I GGTCTC 1 cut(s) 586
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 68
BspACI CCGC 1 cut(s) 413
BspANI GGCC 4 cut(s) 67, 126, 737, 782
BspCNI CTCAG 2 cut(s) 48, 563
BspFNI CGCG 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 227
BspMAI CTGCAG 1 cut(s) 182
BspPI GGATC 1 cut(s) 247
BspTNI GGTCTC 1 cut(s) 586
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 3 cut(s) 68, 115, 642
BssHII GCGCGC 1 cut(s) 368
BssMI GATC 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 20, 801
Bst6I CTCTTC 2 cut(s) 39, 155
BstAPI GCANNNNNTGC 2 cut(s) 149, 307
BstBAI YACGTR 1 cut(s) 589
BstC8I GCNNGC 2 cut(s) 370, 869
BstDEI CTNAG 5 cut(s) 56, 139, 470, 500, 550
BstDSI CCRYGG 2 cut(s) 68, 115
BstF5I GGATG 2 cut(s) 435, 882
BstFNI CGCG 1 cut(s) 370
BstHHI GCGC 3 cut(s) 301, 370, 372
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 2 cut(s) 540, 586
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 5 cut(s) 11, 73, 149, 307, 710
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 1 cut(s) 871
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 1 cut(s) 178
BstSLI GKGCMC 1 cut(s) 29
BstUI CGCG 1 cut(s) 370
BstV1I GCAGC 2 cut(s) 164, 651
BstV2I GAAGAC 1 cut(s) 90
BsuI GTATCC 1 cut(s) 825
BsuRI GGCC 4 cut(s) 67, 126, 737, 782
BtgI CCRYGG 2 cut(s) 68, 115
BtsCI GGATG 2 cut(s) 435, 882
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 2 cut(s) 370, 869
CfoI GCGC 3 cut(s) 301, 370, 372
Cfr13I GGNCC 1 cut(s) 65
CseI GACGC 1 cut(s) 82
CspCI CAANNNNNGTGG 2 cut(s) 558, 593
CviAII CATG 5 cut(s) 69, 221, 701, 745, 868
DdeI CTNAG 5 cut(s) 56, 139, 470, 500, 550
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
DriI GACNNNNNGTC 1 cut(s) 441
Eam1104I CTCTTC 2 cut(s) 39, 155
Eam1105I GACNNNNNGTC 1 cut(s) 441
EarI CTCTTC 2 cut(s) 39, 155
Eco130I CCWWGG 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 586
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 5 cut(s) 72, 224, 704, 748, 871
FatI CATG 5 cut(s) 68, 220, 700, 744, 867
Fnu4HI GCNGC 2 cut(s) 178, 665
FokI GGATG 1 cut(s) 442
Fsp4HI GCNGC 2 cut(s) 178, 665
GlaI GCGC 3 cut(s) 300, 369, 371
GluI GCNGC 2 cut(s) 178, 665
GsuI CTGGAG 1 cut(s) 364
HaeIII GGCC 4 cut(s) 67, 126, 737, 782
HgaI GACGC 1 cut(s) 82
HhaI GCGC 3 cut(s) 301, 370, 372
Hin1II CATG 5 cut(s) 72, 224, 704, 748, 871
Hin6I GCGC 3 cut(s) 299, 368, 370
HinP1I GCGC 3 cut(s) 299, 368, 370
HinfI GANTC 3 cut(s) 386, 442, 647
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 5 cut(s) 204, 447, 595, 646, 775
Hpy188III TCNNGA 4 cut(s) 250, 407, 427, 677
Hpy8I GTNNAC 1 cut(s) 27
HpyAV CCTTC 4 cut(s) 116, 492, 537, 808
HpyCH4III ACNGT 2 cut(s) 20, 801
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 6 cut(s) 14, 27, 152, 180, 358, 871
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 73, 149, 307, 710
HpyF3I CTNAG 5 cut(s) 56, 139, 470, 500, 550
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 5 cut(s) 72, 224, 704, 748, 871
HspAI GCGC 3 cut(s) 299, 368, 370
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 3 cut(s) 454, 529, 864
Lsp1109I GCAGC 2 cut(s) 164, 651
LweI GCATC 2 cut(s) 400, 420
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 1 cut(s) 278
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MfeI CAATTG 1 cut(s) 606
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 8 cut(s) 100, 196, 505, 606, 613, 672, 724, 841
MlyI GAGTC 2 cut(s) 395, 451
MnlI CCTC 8 cut(s) 156, 180, 393, 549, 652, 678, 742, 793
MseI TTAA 3 cut(s) 195, 333, 378
MslI CAYNNNNRTG 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 664
MspR9I CCNGG 1 cut(s) 312
MunI CAATTG 1 cut(s) 606
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 312
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 5 cut(s) 11, 73, 149, 307, 710
NcoI CCATGG 1 cut(s) 68
NdeII GATC 1 cut(s) 252
NlaIII CATG 5 cut(s) 72, 224, 704, 748, 871
NlaIV GGNNCC 1 cut(s) 227
NspI RCATGY 1 cut(s) 871
PaeI GCATGC 1 cut(s) 871
PalAI GGCGCGCC 1 cut(s) 368
PauI GCGCGC 1 cut(s) 368
PctI GAATGC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 647
PkrI GCNGC 2 cut(s) 179, 666
PleI GAGTC 2 cut(s) 394, 450
PpsI GAGTC 2 cut(s) 394, 450
Ppu21I YACGTR 1 cut(s) 589
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 227
PspPI GGNCC 1 cut(s) 65
PstI CTGCAG 1 cut(s) 182
PteI GCGCGC 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 664
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 3 cut(s) 195, 333, 378
SatI GCNGC 2 cut(s) 178, 665
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 2 cut(s) 395, 451
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 29
SfaNI GCATC 2 cut(s) 400, 420
SfcI CTRYAG 1 cut(s) 178
SgsI GGCGCGCC 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 132
SphI GCATGC 1 cut(s) 871
Sse9I AATT 8 cut(s) 100, 196, 505, 606, 613, 672, 724, 841
SsiI CCGC 1 cut(s) 413
SspI AATATT 1 cut(s) 382
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 2 cut(s) 20, 801
TaiI ACGT 1 cut(s) 591
TaqI TCGA 1 cut(s) 418
TasI AATT 8 cut(s) 100, 196, 505, 606, 613, 672, 724, 841
TfiI GAWTC 1 cut(s) 647
Tru1I TTAA 3 cut(s) 195, 333, 378
Tru9I TTAA 3 cut(s) 195, 333, 378
TscAI CASTG 1 cut(s) 25
TseI GCWGC 2 cut(s) 177, 664
TspDTI ATGAA 2 cut(s) 54, 684
TspRI CASTG 1 cut(s) 25
VneI GTGCAC 1 cut(s) 25
XapI RAATTY 2 cut(s) 613, 672
XceI RCATGY 1 cut(s) 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.