RchiOBHm_Chr6g0267581
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006759
Physical Location & Seq
Reverse (-)
24422147 .. 24423338
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24001

Sequence Viewer

Length: 879 bp
ATGGCTGGTGTTGCAAACAGTGTGTGCACAAGTCCTAATGAAGAAGAGAATGAGCTGAGAAAAGGGCCATGGACACTTGCCGAAGACACCCTGCTCATAAATTACATTGCCAACCACGGCGAAGGCCATTGGAATGCCTTAGCGAAATGTGCAGGATTGAAGAGGAAAGGAAAAAGCTGCAGATTGAGGTGGCTTAATTATCTGAAACCCAACACCAAGCGTGGGAACCTTACTTCACAAGAACAACTCTTGATCCTTGAACTCCATTCCAAGTGGGGTAACAGGTGGACAAAAATAGCGCAACATTTGCCAGGAAGAACAGACGATGAGATTAAGACCTACTGGAGAACAAGGGTACAGAAACAGGTGCGCCAACTTAATATTGAGTCTAATAGCGAGAGGTTTCTTGATGCGGTTCGATGTTTCTGGATGCCGACTTTGCATCAGAAAATGGAGCAACCTTCTTCACTTAGTTTAGACCCTTCTTCTTCTTCTCTAAGTAATTCGCAAATTGCTGTAGCTCCTTCTCTGTCTCCTCAAACCTACTCAGTTTCTTCTTCTCCACCATGCAAGGTGGTCTCACACGTATCTGATTATTCCCCAATTGGAAATTCAAGCCCAAGTCATAGTAGTCTTTCCTCGGATTCTCTTATTTCACAGCTGCCTCAAATTCAAGAACAACCAGCAAGTTCATCCCATGCCTTTGAAGCTCTAAATGACAATTATTATGTGGACTATGACATGAAGGGTTTTAGCTTTGACCCTGTTTCAGAAATGGCCTCTTTTGACACTTCACAGTTTGATTGCCAGACTGCAGAAAGCGATTGGATAGCAGACAATTACATGACTGACACTTTATGGAGCATGCAGGGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009267 GO:0009605 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010371 GO:0010373 GO:0010468 GO:0010476 GO:0010556 GO:0010558 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0014070 GO:0016036 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0045892 GO:0045934 GO:0046394 GO:0046677 GO:0046885 GO:0046890 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060255 GO:0061458 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

292

Amino Acids

32.85

Weight (kDa)

5.76

Isoelectric Point (pI)

60.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 21 - 68 1e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 24 - 79 3.3e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 74 - 117 9.6e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 78 - 127 1.5e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 413
AclWI GGATC 1 cut(s) 247
AcsI RAATTY 2 cut(s) 610, 669
AfaI GTAC 1 cut(s) 357
AfiI CCNNNNNNNGG 1 cut(s) 222
AflIII ACRYGT 1 cut(s) 583
AgsI TTSAA 5 cut(s) 160, 260, 615, 674, 707
AjnI CCWGG 1 cut(s) 310
AjuI GAANNNNNNNTTGG 2 cut(s) 595, 627
AluBI AGCT 6 cut(s) 55, 177, 521, 661, 710, 756
AluI AGCT 6 cut(s) 55, 177, 521, 661, 710, 756
Alw21I GWGCWC 1 cut(s) 29
Alw26I GTCTC 2 cut(s) 537, 583
Alw44I GTGCAC 1 cut(s) 25
AlwI GGATC 1 cut(s) 247
AoxI GGCC 3 cut(s) 65, 124, 777
ApaLI GTGCAC 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 177, 661
ApoI RAATTY 2 cut(s) 610, 669
AspLEI GCGC 2 cut(s) 301, 372
AspS9I GGNCC 1 cut(s) 65
BaeGI GKGCMC 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 29
BbvI GCAGC 2 cut(s) 164, 648
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 2 cut(s) 537, 583
BfmI CTRYAG 3 cut(s) 178, 516, 813
BisI GCNGC 2 cut(s) 178, 662
BlsI GCNGC 2 cut(s) 179, 663
Bme1390I CCNGG 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 3 cut(s) 400, 420, 451
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 364
Bpu10I CCTNAGC 1 cut(s) 139
BsaAI YACGTR 1 cut(s) 586
BsaI GGTCTC 1 cut(s) 583
BsaJI CCNNGG 3 cut(s) 68, 115, 639
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 68, 115, 639
BseGI GGATG 3 cut(s) 435, 692, 879
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 47, 561
BseNI ACTGG 1 cut(s) 347
BseRI GAGGAG 1 cut(s) 525
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 2 cut(s) 164, 648
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 3 cut(s) 67, 126, 779
BsiHKAI GWGCWC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 2 cut(s) 537, 583
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 3 cut(s) 67, 126, 779
Bso31I GGTCTC 1 cut(s) 583
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 68
BspACI CCGC 1 cut(s) 413
BspANI GGCC 3 cut(s) 67, 126, 779
BspCNI CTCAG 2 cut(s) 48, 560
BspLI GGNNCC 1 cut(s) 227
BspMAI CTGCAG 2 cut(s) 182, 817
BspPI GGATC 1 cut(s) 247
BspTNI GGTCTC 1 cut(s) 583
BsrDI GCAATG 1 cut(s) 105
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 3 cut(s) 68, 115, 639
BssMI GATC 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 20, 798
Bst6I CTCTTC 2 cut(s) 39, 155
BstAPI GCANNNNNTGC 1 cut(s) 307
BstBAI YACGTR 1 cut(s) 586
BstC8I GCNNGC 1 cut(s) 866
BstDEI CTNAG 5 cut(s) 56, 139, 470, 497, 547
BstDSI CCRYGG 2 cut(s) 68, 115
BstF5I GGATG 3 cut(s) 435, 692, 879
BstHHI GCGC 2 cut(s) 301, 372
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 2 cut(s) 537, 583
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 5 cut(s) 11, 149, 307, 439, 707
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 1 cut(s) 868
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 3 cut(s) 178, 516, 813
BstSLI GKGCMC 1 cut(s) 29
BstV1I GCAGC 2 cut(s) 164, 648
BstV2I GAAGAC 1 cut(s) 90
BsuRI GGCC 3 cut(s) 67, 126, 779
BtgI CCRYGG 2 cut(s) 68, 115
BtsCI GGATG 3 cut(s) 435, 692, 879
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 866
CfoI GCGC 2 cut(s) 301, 372
Cfr13I GGNCC 1 cut(s) 65
Csp6I GTAC 1 cut(s) 356
CviAII CATG 6 cut(s) 69, 567, 698, 742, 844, 865
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 5 cut(s) 56, 139, 470, 497, 547
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 39, 155
EarI CTCTTC 2 cut(s) 39, 155
Eco130I CCWWGG 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 583
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 6 cut(s) 72, 570, 701, 745, 847, 868
FatI CATG 6 cut(s) 68, 566, 697, 741, 843, 864
Fnu4HI GCNGC 2 cut(s) 178, 662
FokI GGATG 2 cut(s) 442, 679
Fsp4HI GCNGC 2 cut(s) 178, 662
GlaI GCGC 2 cut(s) 300, 371
GluI GCNGC 2 cut(s) 178, 662
GsuI CTGGAG 1 cut(s) 364
HaeIII GGCC 3 cut(s) 67, 126, 779
HhaI GCGC 2 cut(s) 301, 372
Hin1II CATG 6 cut(s) 72, 570, 701, 745, 847, 868
Hin6I GCGC 2 cut(s) 299, 370
HinP1I GCGC 2 cut(s) 299, 370
HinfI GANTC 2 cut(s) 386, 644
Hpy166II GTNNAC 3 cut(s) 27, 288, 733
Hpy188I TCNGA 5 cut(s) 204, 447, 592, 643, 772
Hpy188III TCNNGA 4 cut(s) 250, 407, 427, 674
Hpy8I GTNNAC 3 cut(s) 27, 288, 733
HpyAV CCTTC 5 cut(s) 116, 471, 492, 534, 739
HpyCH4III ACNGT 2 cut(s) 20, 798
HpyCH4IV ACGT 1 cut(s) 585
HpyCH4V TGCA 8 cut(s) 14, 27, 152, 180, 442, 570, 815, 868
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 149, 307, 439, 707
HpyF3I CTNAG 5 cut(s) 56, 139, 470, 497, 547
HpySE526I ACGT 1 cut(s) 585
Hsp92II CATG 6 cut(s) 72, 570, 701, 745, 847, 868
HspAI GCGC 2 cut(s) 299, 370
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 3 cut(s) 454, 526, 861
Lsp1109I GCAGC 2 cut(s) 164, 648
LweI GCATC 3 cut(s) 400, 420, 451
MaeII ACGT 1 cut(s) 585
MaeIII GTNAC 1 cut(s) 278
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MfeI CAATTG 1 cut(s) 603
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 9 cut(s) 100, 196, 502, 510, 603, 610, 669, 721, 838
MlyI GAGTC 1 cut(s) 395
MnlI CCTC 7 cut(s) 156, 180, 393, 546, 649, 675, 790
MseI TTAA 3 cut(s) 195, 333, 378
MslI CAYNNNNRTG 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 661
MspR9I CCNGG 1 cut(s) 312
MunI CAATTG 1 cut(s) 603
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 5 cut(s) 11, 149, 307, 439, 707
NcoI CCATGG 1 cut(s) 68
NdeII GATC 1 cut(s) 252
NlaIII CATG 6 cut(s) 72, 570, 701, 745, 847, 868
NlaIV GGNNCC 1 cut(s) 227
NspI RCATGY 1 cut(s) 868
PaeI GCATGC 1 cut(s) 868
PctI GAATGC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 644
PkrI GCNGC 2 cut(s) 179, 663
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Ppu21I YACGTR 1 cut(s) 586
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 227
PspPI GGNCC 1 cut(s) 65
PstI CTGCAG 2 cut(s) 182, 817
PvuII CAGCTG 1 cut(s) 661
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 3 cut(s) 195, 333, 378
SatI GCNGC 2 cut(s) 178, 662
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 29
SfaNI GCATC 3 cut(s) 400, 420, 451
SfcI CTRYAG 3 cut(s) 178, 516, 813
SmiMI CAYNNNNRTG 1 cut(s) 132
SphI GCATGC 1 cut(s) 868
Sse9I AATT 9 cut(s) 100, 196, 502, 510, 603, 610, 669, 721, 838
SsiI CCGC 1 cut(s) 413
SspI AATATT 1 cut(s) 382
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 2 cut(s) 20, 798
TaiI ACGT 1 cut(s) 588
TaqI TCGA 1 cut(s) 418
TasI AATT 9 cut(s) 100, 196, 502, 510, 603, 610, 669, 721, 838
TfiI GAWTC 1 cut(s) 644
Tru1I TTAA 3 cut(s) 195, 333, 378
Tru9I TTAA 3 cut(s) 195, 333, 378
TscAI CASTG 1 cut(s) 25
TseI GCWGC 2 cut(s) 177, 661
TspDTI ATGAA 3 cut(s) 54, 681, 758
TspRI CASTG 1 cut(s) 25
VneI GTGCAC 1 cut(s) 25
XapI RAATTY 2 cut(s) 610, 669
XceI RCATGY 1 cut(s) 868
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.