Rorug04G0280000
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0006759
Physical Location & Seq
Forward (+)
45282000 .. 45282974
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0280000.1

Sequence Viewer

Length: 726 bp
ATGGCTATGGCACTTCCTCTCATCACTTCTGGCCTCAATGTGGTCGGCACACTCATCAGCATGTGCTTTGTGGATAAATGCGGAAGGAGAAGGCTCATGATCATTTCCATGTTCGGAATCATCAGTTGCCTCATCGTGTTAGCTGGAGTATTCTTCTATGCCGCAGCTCATTCTCCAACTATTAGCCACTTGGAATCCGATCACTTTGGTACCAACACTACATCTCCAACTTATATATCATGGAACTGCATGACATGCTTGAAATCAACAGATTGCGCCTTATGTGCTAGTAATGTTGATAATCTGGCCCCAGGAGTCAATGCCATGAAGAACATAGGGTACTCTAAAGGGTGTCCTACAAAAATTGGTATCTTTGCAGTCATTTTGTTGGGATTGTACACCATTATGTATGCACCTGGAATGGGAACTATTCCTTGGATTGTGAACTCAGAGATATACCCATTGAGATACAGAGGCACTGGTGGAGGGATTGCTGCAGTTTCCAACTGCACTGCAAATCTCATTGTGAGTGAGACATACTTAACCCTCACTAAGGAACTGGGTTCGGCTGGAACCTTCCTCCTATTTGCTGGGTTTTCTACCATTGGACTTGTATTCATTTACTTACTGGTTCCTAAAACCAAAGGAATGCAATTCGAAGAGGTCGAGAAATTGCTCCAGAAGGGTTTCCGACCCAAGTTATTTGCTCCGAAGGACACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009267 GO:0009605 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010371 GO:0010373 GO:0010468 GO:0010476 GO:0010556 GO:0010558 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0014070 GO:0016036 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0045892 GO:0045934 GO:0046394 GO:0046677 GO:0046885 GO:0046890 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060255 GO:0061458 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

241

Amino Acids

25.97

Weight (kDa)

8.84

Isoelectric Point (pI)

31.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 7 - 56 7.3e-08 Sugar (and other) transporter
Sugar_tr PF00083 120 - 225 4.7e-24 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 209
AccB1I GGYRCC 1 cut(s) 209
AciI CCGC 2 cut(s) 81, 162
AfaI GTAC 3 cut(s) 211, 341, 398
AfiI CCNNNNNNNGG 3 cut(s) 40, 422, 553
AgsI TTSAA 1 cut(s) 262
AjnI CCWGG 2 cut(s) 310, 415
AjuI GAANNNNNNNTTGG 2 cut(s) 418, 450
AluBI AGCT 2 cut(s) 143, 167
AluI AGCT 2 cut(s) 143, 167
Alw26I GTCTC 1 cut(s) 527
AoxI GGCC 2 cut(s) 31, 306
ApeKI GCWGC 2 cut(s) 164, 494
Asp700I GAANNNNTTC 1 cut(s) 686
Asp718I GGTACC 1 cut(s) 209
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 307
AsuII TTCGAA 1 cut(s) 657
BaeI ACNNNNGTAYC 2 cut(s) 193, 226
BanI GGYRCC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 176, 481
BciT130I CCWGG 2 cut(s) 312, 417
BclI TGATCA 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 527
BfaI CTAG 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 495
BisI GCNGC 3 cut(s) 162, 165, 495
BlsI GCNGC 3 cut(s) 163, 166, 496
Bme1390I CCNGG 2 cut(s) 312, 417
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 4 cut(s) 211, 309, 574, 633
BmrFI CCNGG 2 cut(s) 312, 417
BmrI ACTGGG 1 cut(s) 569
BmuI ACTGGG 1 cut(s) 569
BpmI CTGGAG 2 cut(s) 165, 662
Bpu14I TTCGAA 1 cut(s) 657
BsaJI CCNNGG 2 cut(s) 310, 434
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 422, 553
Bse1I ACTGG 3 cut(s) 484, 564, 633
BseBI CCWGG 2 cut(s) 312, 417
BseDI CCNNGG 2 cut(s) 310, 434
BseLI CCNNNNNNNGG 3 cut(s) 40, 422, 553
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 3 cut(s) 484, 564, 633
BseXI GCAGC 2 cut(s) 176, 481
BseYI CCCAGC 1 cut(s) 590
BsgI GTGCAG 1 cut(s) 493
BshFI GGCC 2 cut(s) 33, 308
BshNI GGYRCC 1 cut(s) 209
BslI CCNNNNNNNGG 3 cut(s) 40, 422, 553
BsmAI GTCTC 1 cut(s) 527
BsmI GAATGC 1 cut(s) 654
BsnI GGCC 2 cut(s) 33, 308
Bsp119I TTCGAA 1 cut(s) 657
Bsp1407I TGTACA 1 cut(s) 396
Bsp143I GATC 2 cut(s) 99, 199
BspACI CCGC 2 cut(s) 81, 162
BspANI GGCC 2 cut(s) 33, 308
BspCNI CTCAG 1 cut(s) 461
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 4 cut(s) 211, 309, 574, 633
BspMAI CTGCAG 1 cut(s) 499
BspT104I TTCGAA 1 cut(s) 657
BspT107I GGYRCC 1 cut(s) 209
BsrGI TGTACA 1 cut(s) 396
BsrI ACTGG 3 cut(s) 484, 564, 633
BssECI CCNNGG 2 cut(s) 310, 434
BssMI GATC 2 cut(s) 99, 199
BssT1I CCWWGG 1 cut(s) 434
Bst2UI CCWGG 2 cut(s) 312, 417
Bst6I CTCTTC 1 cut(s) 654
BstAPI GCANNNNNTGC 1 cut(s) 255
BstAUI TGTACA 1 cut(s) 396
BstBI TTCGAA 1 cut(s) 657
BstDEI CTNAG 2 cut(s) 448, 552
BstENI CCTNNNNNAGG 1 cut(s) 551
BstHHI GCGC 1 cut(s) 278
BstKTI GATC 2 cut(s) 102, 202
BstMAI GTCTC 1 cut(s) 527
BstMBI GATC 2 cut(s) 99, 199
BstMWI GCNNNNNNNGC 2 cut(s) 255, 284
BstNI CCWGG 2 cut(s) 312, 417
BstNSI RCATGY 2 cut(s) 64, 258
BstSCI CCNGG 2 cut(s) 310, 415
BstSFI CTRYAG 1 cut(s) 495
BstV1I GCAGC 2 cut(s) 176, 481
BsuRI GGCC 2 cut(s) 33, 308
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 2 cut(s) 477, 510
CciI TCATGA 1 cut(s) 96
CfoI GCGC 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 307
Csp6I GTAC 3 cut(s) 210, 340, 397
CviAII CATG 7 cut(s) 61, 97, 109, 240, 250, 255, 325
CviJI RGCY 8 cut(s) 5, 33, 94, 143, 167, 186, 308, 569
CviKI_1 RGCY 8 cut(s) 5, 33, 94, 143, 167, 186, 308, 569
CviQI GTAC 3 cut(s) 210, 340, 397
DdeI CTNAG 2 cut(s) 448, 552
DpnI GATC 2 cut(s) 101, 201
DpnII GATC 2 cut(s) 99, 199
Eam1104I CTCTTC 1 cut(s) 654
EarI CTCTTC 1 cut(s) 654
Eco130I CCWWGG 1 cut(s) 434
EcoNI CCTNNNNNAGG 1 cut(s) 551
EcoRII CCWGG 2 cut(s) 310, 415
EcoT14I CCWWGG 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 434
FaeI CATG 7 cut(s) 64, 100, 112, 243, 253, 258, 328
FatI CATG 7 cut(s) 60, 96, 108, 239, 249, 254, 324
FbaI TGATCA 1 cut(s) 99
Fnu4HI GCNGC 3 cut(s) 162, 165, 495
Fsp4HI GCNGC 3 cut(s) 162, 165, 495
FspBI CTAG 1 cut(s) 288
GlaI GCGC 1 cut(s) 277
GluI GCNGC 3 cut(s) 162, 165, 495
GsaI CCCAGC 1 cut(s) 594
GsuI CTGGAG 2 cut(s) 165, 662
HaeIII GGCC 2 cut(s) 33, 308
HhaI GCGC 1 cut(s) 278
Hin1II CATG 7 cut(s) 64, 100, 112, 243, 253, 258, 328
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HinfI GANTC 3 cut(s) 117, 194, 315
Hpy166II GTNNAC 2 cut(s) 399, 445
Hpy188I TCNGA 5 cut(s) 116, 199, 451, 692, 711
Hpy188III TCNNGA 3 cut(s) 97, 667, 679
Hpy8I GTNNAC 2 cut(s) 399, 445
HpyAV CCTTC 5 cut(s) 78, 84, 586, 676, 706
HpyCH4V TGCA 7 cut(s) 249, 377, 413, 497, 510, 515, 652
HpyF10VI GCNNNNNNNGC 2 cut(s) 255, 284
HpyF3I CTNAG 2 cut(s) 448, 552
Hsp92II CATG 7 cut(s) 64, 100, 112, 243, 253, 258, 328
HspAI GCGC 1 cut(s) 276
KpnI GGTACC 1 cut(s) 213
Ksp22I TGATCA 1 cut(s) 99
Kzo9I GATC 2 cut(s) 99, 199
LmnI GCTCC 2 cut(s) 681, 712
Lsp1109I GCAGC 2 cut(s) 176, 481
MaeI CTAG 1 cut(s) 288
MalI GATC 2 cut(s) 101, 201
MboI GATC 2 cut(s) 99, 199
MboII GAAGA 3 cut(s) 145, 340, 671
MluCI AATT 4 cut(s) 363, 653, 671, 721
MlyI GAGTC 1 cut(s) 324
MmeI TCCRAC 4 cut(s) 200, 251, 528, 715
MnlI CCTC 8 cut(s) 27, 44, 140, 467, 479, 557, 590, 655
MroXI GAANNNNTTC 1 cut(s) 686
MseI TTAA 2 cut(s) 542, 724
MslI CAYNNNNRTG 3 cut(s) 59, 107, 404
MspR9I CCNGG 2 cut(s) 312, 417
Mva1269I GAATGC 1 cut(s) 654
MvaI CCWGG 2 cut(s) 312, 417
MwoI GCNNNNNNNGC 2 cut(s) 255, 284
NdeII GATC 2 cut(s) 99, 199
NlaIII CATG 7 cut(s) 64, 100, 112, 243, 253, 258, 328
NlaIV GGNNCC 4 cut(s) 211, 309, 574, 633
NspI RCATGY 2 cut(s) 64, 258
NspV TTCGAA 1 cut(s) 657
PagI TCATGA 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 663
PctI GAATGC 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 686
PfeI GAWTC 2 cut(s) 117, 194
PkrI GCNGC 3 cut(s) 163, 166, 496
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
Psp6I CCWGG 2 cut(s) 310, 415
PspFI CCCAGC 1 cut(s) 590
PspGI CCWGG 2 cut(s) 310, 415
PspN4I GGNNCC 4 cut(s) 211, 309, 574, 633
PspPI GGNCC 1 cut(s) 307
PsrI GAACNNNNNNTAC 2 cut(s) 323, 355
PstI CTGCAG 1 cut(s) 499
RsaI GTAC 3 cut(s) 211, 341, 398
RsaNI GTAC 3 cut(s) 210, 340, 397
RseI CAYNNNNRTG 3 cut(s) 59, 107, 404
SaqAI TTAA 2 cut(s) 542, 724
SatI GCNGC 3 cut(s) 162, 165, 495
Sau3AI GATC 2 cut(s) 99, 199
Sau96I GGNCC 1 cut(s) 307
SchI GAGTC 1 cut(s) 324
ScrFI CCNGG 2 cut(s) 312, 417
SetI ASST 5 cut(s) 145, 169, 418, 578, 666
SfcI CTRYAG 1 cut(s) 495
SfuI TTCGAA 1 cut(s) 657
SmiMI CAYNNNNRTG 3 cut(s) 59, 107, 404
Sse9I AATT 4 cut(s) 363, 653, 671, 721
SsiI CCGC 2 cut(s) 81, 162
SspMI CTAG 1 cut(s) 288
StyD4I CCNGG 2 cut(s) 310, 415
StyI CCWWGG 1 cut(s) 434
TaqI TCGA 2 cut(s) 657, 666
TasI AATT 4 cut(s) 363, 653, 671, 721
TatI WGTACW 1 cut(s) 396
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 2 cut(s) 117, 194
Tru1I TTAA 2 cut(s) 542, 724
Tru9I TTAA 2 cut(s) 542, 724
TscAI CASTG 2 cut(s) 484, 517
TseI GCWGC 2 cut(s) 164, 494
TspDTI ATGAA 2 cut(s) 341, 607
TspRI CASTG 2 cut(s) 484, 517
XagI CCTNNNNNAGG 1 cut(s) 551
XceI RCATGY 2 cut(s) 64, 258
XmnI GAANNNNTTC 1 cut(s) 686
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.