Rmu_sc0002328.1_g000003
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002328.1
OG0006759
Physical Location & Seq
Forward (+)
26216 .. 27283
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002328.1_g000003.1.cds

Sequence Viewer

Length: 900 bp
atggctggtgttgcaaacagtgtgtacacaagtcctaatgaagaagagaatgagatgagaaaggggccatggacgcttgacgaagacaccctgctcatacattacattgccaaccacggcgaaggacattggaatgccttagcaaaatgtgcaggattgaagaggacaggaaaaagctgcagattaagatggttgaattatttgaaacctgacatcaagcgtgggaaccttactccacaagaacaactcttgatccttgaactccatgccaagtggggtaacaggtggtcgaaaatagcacaacatttgccaggaagaacagacaatgagattaagaactattggagaacaagggtgcaaaaacaagcgcgccaacttaatattgagtctgatagcaagaggtttcttgatgcggttcgatgtttctggatgccgactttgcgtcagaagatggagcaaacttcttcacttagtttagacccaccttcttcttcttcttctcattctaattacttgacttctcagatctctatagctccttctctgtcgacgtctcctcaaacttgctcggttccttcttctccgccaagcaaggtggtctcacacgtatctgattattccccaattggaacttcaagcccaagtcataatagtctttcctcggattctcttatttcacagctgcctcaaattacagaacaaccagcaagttcatcctatgcctttgaagctctaaatgacaattattatatggactatgacatggagggttttagccttgaccctgtttcagaaatggcatcttttgacacttcacagtttgattgccagatggcagaaagcgattggataccaagcaattacatgactgacactttatggaacatgcaggggatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009267 GO:0009605 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010371 GO:0010373 GO:0010468 GO:0010476 GO:0010556 GO:0010558 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0014070 GO:0016036 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0045892 GO:0045934 GO:0046394 GO:0046677 GO:0046885 GO:0046890 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060255 GO:0061458 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

299

Amino Acids

33.77

Weight (kDa)

5.62

Isoelectric Point (pI)

67.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 554
AccI GTMKAC 1 cut(s) 548
AccII CGCG 1 cut(s) 370
AciI CCGC 2 cut(s) 413, 584
AclWI GGATC 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 551
AfaI GTAC 1 cut(s) 26
AflIII ACRYGT 1 cut(s) 604
AgsI TTSAA 6 cut(s) 160, 196, 205, 260, 636, 728
AhdI GACNNNNNGTC 1 cut(s) 441
AjnI CCWGG 1 cut(s) 310
AjuI GAANNNNNNNTTGG 2 cut(s) 616, 648
AluBI AGCT 4 cut(s) 177, 536, 682, 731
AluI AGCT 4 cut(s) 177, 536, 682, 731
Alw26I GTCTC 2 cut(s) 558, 604
AlwI GGATC 1 cut(s) 247
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 177, 682
AspLEI GCGC 2 cut(s) 370, 372
AspS9I GGNCC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 2 cut(s) 164, 669
BccI CCATC 3 cut(s) 183, 445, 826
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 312
BciVI GTATCC 1 cut(s) 843
BcoDI GTCTC 2 cut(s) 558, 604
BfmI CTRYAG 2 cut(s) 178, 531
BfuI GTATCC 1 cut(s) 843
BglII AGATCT 1 cut(s) 525
BisI GCNGC 2 cut(s) 178, 683
BlsI GCNGC 2 cut(s) 179, 684
Bme1390I CCNGG 1 cut(s) 312
BmeRI GACNNNNNGTC 1 cut(s) 441
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 3 cut(s) 66, 227, 573
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 3 cut(s) 400, 420, 809
BpiI GAAGAC 1 cut(s) 90
Bpu10I CCTNAGC 1 cut(s) 139
BsaAI YACGTR 1 cut(s) 607
BsaHI GRCGYC 1 cut(s) 551
BsaI GGTCTC 1 cut(s) 604
BsaJI CCNNGG 3 cut(s) 68, 115, 660
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 68, 115, 660
BseGI GGATG 3 cut(s) 435, 713, 900
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 536
BsePI GCGCGC 1 cut(s) 368
BseRI GAGGAG 1 cut(s) 546
BseXI GCAGC 2 cut(s) 164, 669
BsgI GTGCAG 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 370
BshFI GGCC 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 558, 604
BsmBI CGTCTC 1 cut(s) 558
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 1 cut(s) 67
Bso31I GGTCTC 1 cut(s) 604
Bsp1407I TGTACA 1 cut(s) 24
Bsp143I GATC 2 cut(s) 252, 525
Bsp19I CCATGG 1 cut(s) 68
BspACI CCGC 2 cut(s) 413, 584
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 535
BspFNI CGCG 1 cut(s) 370
BspLI GGNNCC 3 cut(s) 66, 227, 573
BspMAI CTGCAG 1 cut(s) 182
BspPI GGATC 1 cut(s) 247
BspTNI GGTCTC 1 cut(s) 604
BsrDI GCAATG 1 cut(s) 105
BsrGI TGTACA 1 cut(s) 24
BssECI CCNNGG 3 cut(s) 68, 115, 660
BssHII GCGCGC 1 cut(s) 368
BssMI GATC 2 cut(s) 252, 525
BssNI GRCGYC 1 cut(s) 551
BssT1I CCWWGG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 20, 819
Bst6I CTCTTC 2 cut(s) 39, 155
BstACI GRCGYC 1 cut(s) 551
BstAPI GCANNNNNTGC 1 cut(s) 149
BstAUI TGTACA 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 3 cut(s) 139, 470, 522
BstDSI CCRYGG 2 cut(s) 68, 115
BstF5I GGATG 3 cut(s) 435, 713, 900
BstFNI CGCG 1 cut(s) 370
BstHHI GCGC 2 cut(s) 370, 372
BstKTI GATC 2 cut(s) 255, 528
BstMAI GTCTC 2 cut(s) 558, 604
BstMBI GATC 2 cut(s) 252, 525
BstMWI GCNNNNNNNGC 5 cut(s) 11, 73, 149, 439, 728
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 1 cut(s) 889
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 2 cut(s) 178, 531
BstUI CGCG 1 cut(s) 370
BstV1I GCAGC 2 cut(s) 164, 669
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 525
BstYI RGATCY 1 cut(s) 525
BsuI GTATCC 1 cut(s) 843
BsuRI GGCC 1 cut(s) 67
BtgI CCRYGG 2 cut(s) 68, 115
BtsCI GGATG 3 cut(s) 435, 713, 900
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 370
CfoI GCGC 2 cut(s) 370, 372
Cfr13I GGNCC 1 cut(s) 65
CseI GACGC 2 cut(s) 82, 431
Csp6I GTAC 1 cut(s) 25
CspCI CAANNNNNGTGG 2 cut(s) 576, 611
CviAII CATG 5 cut(s) 69, 266, 763, 865, 886
CviJI RGCY 8 cut(s) 5, 67, 177, 536, 639, 682, 731, 777
CviKI_1 RGCY 8 cut(s) 5, 67, 177, 536, 639, 682, 731, 777
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 3 cut(s) 139, 470, 522
DpnI GATC 2 cut(s) 254, 527
DpnII GATC 2 cut(s) 252, 525
DriI GACNNNNNGTC 1 cut(s) 441
Eam1104I CTCTTC 2 cut(s) 39, 155
Eam1105I GACNNNNNGTC 1 cut(s) 441
EarI CTCTTC 2 cut(s) 39, 155
EciI GGCGGA 1 cut(s) 573
Eco130I CCWWGG 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 604
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 558
FaeI CATG 5 cut(s) 72, 269, 766, 868, 889
FatI CATG 5 cut(s) 68, 265, 762, 864, 885
FblI GTMKAC 1 cut(s) 548
Fnu4HI GCNGC 2 cut(s) 178, 683
FokI GGATG 2 cut(s) 442, 700
Fsp4HI GCNGC 2 cut(s) 178, 683
GlaI GCGC 2 cut(s) 369, 371
GluI GCNGC 2 cut(s) 178, 683
HaeIII GGCC 1 cut(s) 67
HgaI GACGC 2 cut(s) 82, 431
HhaI GCGC 2 cut(s) 370, 372
Hin1I GRCGYC 1 cut(s) 551
Hin1II CATG 5 cut(s) 72, 269, 766, 868, 889
Hin6I GCGC 2 cut(s) 368, 370
HinP1I GCGC 2 cut(s) 368, 370
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HinfI GANTC 2 cut(s) 386, 665
Hpy166II GTNNAC 3 cut(s) 25, 27, 549
Hpy188I TCNGA 6 cut(s) 391, 447, 525, 613, 664, 793
Hpy188III TCNNGA 3 cut(s) 250, 407, 427
Hpy8I GTNNAC 3 cut(s) 25, 27, 549
Hpy99I CGWCG 1 cut(s) 553
HpyAV CCTTC 4 cut(s) 116, 495, 549, 585
HpyCH4III ACNGT 2 cut(s) 20, 819
HpyCH4IV ACGT 2 cut(s) 551, 606
HpyCH4V TGCA 5 cut(s) 14, 152, 180, 358, 889
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 73, 149, 439, 728
HpyF3I CTNAG 3 cut(s) 139, 470, 522
HpySE526I ACGT 2 cut(s) 551, 606
Hsp92I GRCGYC 1 cut(s) 551
Hsp92II CATG 5 cut(s) 72, 269, 766, 868, 889
HspAI GCGC 2 cut(s) 368, 370
Kzo9I GATC 2 cut(s) 252, 525
LmnI GCTCC 2 cut(s) 454, 541
Lsp1109I GCAGC 2 cut(s) 164, 669
LweI GCATC 3 cut(s) 400, 420, 809
MaeII ACGT 2 cut(s) 551, 606
MaeIII GTNAC 1 cut(s) 278
MalI GATC 2 cut(s) 254, 527
MboI GATC 2 cut(s) 252, 525
MfeI CAATTG 1 cut(s) 624
MflI RGATCY 1 cut(s) 525
MluCI AATT 6 cut(s) 196, 508, 624, 690, 742, 859
MlyI GAGTC 1 cut(s) 395
MnlI CCTC 6 cut(s) 156, 393, 567, 670, 696, 760
MseI TTAA 3 cut(s) 185, 333, 378
MslI CAYNNNNRTG 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 682
MspR9I CCNGG 1 cut(s) 312
MunI CAATTG 1 cut(s) 624
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 312
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 5 cut(s) 11, 73, 149, 439, 728
NcoI CCATGG 1 cut(s) 68
NdeII GATC 2 cut(s) 252, 525
NlaIII CATG 5 cut(s) 72, 269, 766, 868, 889
NlaIV GGNNCC 3 cut(s) 66, 227, 573
NspI RCATGY 1 cut(s) 889
PauI GCGCGC 1 cut(s) 368
PctI GAATGC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 665
PkrI GCNGC 2 cut(s) 179, 684
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Ppu21I YACGTR 1 cut(s) 607
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 3 cut(s) 66, 227, 573
PspPI GGNCC 1 cut(s) 65
PstI CTGCAG 1 cut(s) 182
PsuI RGATCY 1 cut(s) 525
PteI GCGCGC 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 682
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 132
SalI GTCGAC 1 cut(s) 547
SaqAI TTAA 3 cut(s) 185, 333, 378
SatI GCNGC 2 cut(s) 178, 683
Sau3AI GATC 2 cut(s) 252, 525
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 1 cut(s) 312
SfaNI GCATC 3 cut(s) 400, 420, 809
SfcI CTRYAG 2 cut(s) 178, 531
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 6 cut(s) 196, 508, 624, 690, 742, 859
SsiI CCGC 2 cut(s) 413, 584
SspI AATATT 1 cut(s) 382
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 2 cut(s) 20, 819
TaiI ACGT 2 cut(s) 554, 609
TaqI TCGA 3 cut(s) 290, 418, 548
TasI AATT 6 cut(s) 196, 508, 624, 690, 742, 859
TatI WGTACW 1 cut(s) 24
TfiI GAWTC 1 cut(s) 665
Tru1I TTAA 3 cut(s) 185, 333, 378
Tru9I TTAA 3 cut(s) 185, 333, 378
TscAI CASTG 1 cut(s) 25
TseI GCWGC 2 cut(s) 177, 682
TspDTI ATGAA 2 cut(s) 54, 702
TspRI CASTG 1 cut(s) 25
XceI RCATGY 1 cut(s) 889
XmiI GTMKAC 1 cut(s) 548
ZraI GACGTC 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.