FvH4_4g27090
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0006759
Physical Location & Seq
Reverse (-)
28226416 .. 28228122
1707 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27090.t1

Sequence Viewer

Length: 852 bp
ATGGCTGGTGTTGCAAACAGTGCGAGCATAAGTCCTAATGAAGAAGAGAATGAGCTGAGAAAAGGGCCATGGACGCTTGACGAAGACACCCTGCTCATACATTACATTGAAAACCACGGTGAAGGCCATTGGAATGCCTTAGCAAAATGTGCAGGATTGAAGAGGACAGGAAAAAGCTGCAGATTGAGATGGCTGAATTACTTGAAACCTGACATCAAGCGTGGGAACCTTACTCCACAAGAACAACTCTTGATCCTTGAGCTCCATTCCAAGTGGGGTAACAGGTGGTCGAAAATAGCACAACATTTGCCAGGAAGAACAGACAATGAGATTAAGAACTACTGGAGAACAAGGGTGCAAAAACAGGCACGCCAACTTAATATTGAGTCTAATAGCCAGAGGTTTCTTGATGCAGTTCGATGTTTCTGGATGCCGACTTTGCGTCAGAAGATGGAGCAAACTTCACTTAGTTTAGACCCTTCACCTTCTCCTTCCAGTTACTTAACTTCTCACATCTCTGCAGCTCCTACTCCTCCTCCACCAAGCAAGATGGTGTCACACGTATCTGATTATTCCCTAATTGGAAATTCATGCCCGAGTCATAATAGTCCTTCGGAGTCTCTTATCTCACAGCTGCCTCAAATTCCAGAACAGCCAGCAAGTTCATCCTATGCCTTTGAAGCTTTAAATGACAGTTATTATGTGGACTATGACATGGGGGGTCTTGTCCTCGACCCTGTTTCAGAAATGGCCTCTTTCGACGCTTCACAGTTTGATTGCCAAATGACAGAAAGCGATTGGATGTCGAACAATTACATGACTGACACTTTATGGAACATGCAGGGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009267 GO:0009605 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010371 GO:0010373 GO:0010468 GO:0010476 GO:0010556 GO:0010558 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0014070 GO:0016036 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0045892 GO:0045934 GO:0046394 GO:0046677 GO:0046885 GO:0046890 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060255 GO:0061458 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

284

Amino Acids

32.09

Weight (kDa)

5.62

Isoelectric Point (pI)

73.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 21 - 68 1.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 24 - 81 1.3e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 74 - 117 1.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 78 - 124 1.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 247
AcsI RAATTY 2 cut(s) 586, 642
AflIII ACRYGT 1 cut(s) 559
AgsI TTSAA 4 cut(s) 110, 160, 205, 680
AhdI GACNNNNNGTC 1 cut(s) 441
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 6 cut(s) 55, 177, 262, 524, 634, 683
AluI AGCT 6 cut(s) 55, 177, 262, 524, 634, 683
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 1 cut(s) 624
AlwI GGATC 1 cut(s) 247
Ama87I CYCGRG 1 cut(s) 595
AoxI GGCC 3 cut(s) 65, 124, 750
ApeKI GCWGC 3 cut(s) 177, 521, 634
ApoI RAATTY 2 cut(s) 586, 642
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 2 cut(s) 131, 474
AvaI CYCGRG 1 cut(s) 595
BanII GRGCYC 1 cut(s) 264
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 3 cut(s) 164, 533, 621
BccI CCATC 3 cut(s) 183, 445, 544
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 624
BfmI CTRYAG 2 cut(s) 178, 519
BisI GCNGC 3 cut(s) 178, 522, 635
BlsI GCNGC 3 cut(s) 179, 523, 636
Bme1390I CCNGG 1 cut(s) 312
BmeRI GACNNNNNGTC 1 cut(s) 441
BmeT110I CYCGRG 1 cut(s) 595
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 2 cut(s) 400, 420
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 364
Bpu10I CCTNAGC 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 562
BsaJI CCNNGG 2 cut(s) 68, 115
BsaXI ACNNNNNCTCC 2 cut(s) 520, 550
Bse1I ACTGG 2 cut(s) 347, 495
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 68, 115
BseGI GGATG 4 cut(s) 435, 665, 807, 852
BseMII CTCAG 1 cut(s) 47
BseNI ACTGG 2 cut(s) 347, 495
BseRI GAGGAG 2 cut(s) 522, 525
BseXI GCAGC 3 cut(s) 164, 533, 621
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 3 cut(s) 67, 126, 752
BsiHKAI GWGCWC 1 cut(s) 264
BsiHKCI CYCGRG 1 cut(s) 595
BsmAI GTCTC 1 cut(s) 624
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 3 cut(s) 67, 126, 752
BsoBI CYCGRG 1 cut(s) 595
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 68
BspANI GGCC 3 cut(s) 67, 126, 752
BspCNI CTCAG 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 227
BspMAI CTGCAG 2 cut(s) 182, 523
BspPI GGATC 1 cut(s) 247
BsrI ACTGG 2 cut(s) 347, 495
BssECI CCNNGG 2 cut(s) 68, 115
BssMI GATC 1 cut(s) 252
BssT1I CCWWGG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 4 cut(s) 20, 119, 695, 771
Bst6I CTCTTC 2 cut(s) 39, 155
BstAPI GCANNNNNTGC 2 cut(s) 20, 149
BstBAI YACGTR 1 cut(s) 562
BstC8I GCNNGC 3 cut(s) 25, 370, 657
BstDEI CTNAG 3 cut(s) 56, 139, 467
BstDSI CCRYGG 2 cut(s) 68, 115
BstF5I GGATG 4 cut(s) 435, 665, 807, 852
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 1 cut(s) 624
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 6 cut(s) 11, 20, 73, 149, 439, 680
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 1 cut(s) 841
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 2 cut(s) 178, 519
BstV1I GCAGC 3 cut(s) 164, 533, 621
BstV2I GAAGAC 1 cut(s) 90
BsuRI GGCC 3 cut(s) 67, 126, 752
BtgI CCRYGG 2 cut(s) 68, 115
BtsCI GGATG 4 cut(s) 435, 665, 807, 852
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 3 cut(s) 25, 370, 657
Cfr13I GGNCC 1 cut(s) 65
CseI GACGC 3 cut(s) 82, 431, 770
CviAII CATG 5 cut(s) 69, 591, 715, 817, 838
DdeI CTNAG 3 cut(s) 56, 139, 467
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
DraI TTTAAA 1 cut(s) 687
DriI GACNNNNNGTC 1 cut(s) 441
Eam1104I CTCTTC 2 cut(s) 39, 155
Eam1105I GACNNNNNGTC 1 cut(s) 441
EarI CTCTTC 2 cut(s) 39, 155
Ecl136II GAGCTC 1 cut(s) 262
Eco130I CCWWGG 1 cut(s) 68
Eco24I GRGCYC 1 cut(s) 264
Eco53kI GAGCTC 1 cut(s) 262
Eco88I CYCGRG 1 cut(s) 595
EcoICRI GAGCTC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 5 cut(s) 72, 594, 718, 820, 841
FatI CATG 5 cut(s) 68, 590, 714, 816, 837
Fnu4HI GCNGC 3 cut(s) 178, 522, 635
FokI GGATG 3 cut(s) 442, 652, 814
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 3 cut(s) 178, 522, 635
GluI GCNGC 3 cut(s) 178, 522, 635
GsuI CTGGAG 1 cut(s) 364
HaeIII GGCC 3 cut(s) 67, 126, 752
HgaI GACGC 3 cut(s) 82, 431, 770
Hin1II CATG 5 cut(s) 72, 594, 718, 820, 841
HindIII AAGCTT 1 cut(s) 681
HinfI GANTC 3 cut(s) 386, 598, 617
HphI GGTGA 2 cut(s) 131, 474
Hpy166II GTNNAC 1 cut(s) 706
Hpy188I TCNGA 4 cut(s) 447, 568, 616, 745
Hpy188III TCNNGA 4 cut(s) 250, 407, 427, 647
Hpy8I GTNNAC 1 cut(s) 706
Hpy99I CGWCG 1 cut(s) 764
HpyAV CCTTC 5 cut(s) 116, 489, 495, 501, 621
HpyCH4III ACNGT 4 cut(s) 20, 119, 695, 771
HpyCH4IV ACGT 1 cut(s) 561
HpyCH4V TGCA 7 cut(s) 14, 152, 180, 358, 413, 521, 841
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 20, 73, 149, 439, 680
HpyF3I CTNAG 3 cut(s) 56, 139, 467
HpySE526I ACGT 1 cut(s) 561
Hsp92II CATG 5 cut(s) 72, 594, 718, 820, 841
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 3 cut(s) 267, 454, 529
Lsp1109I GCAGC 3 cut(s) 164, 533, 621
LweI GCATC 2 cut(s) 400, 420
MaeII ACGT 1 cut(s) 561
MaeIII GTNAC 3 cut(s) 278, 497, 555
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 6 cut(s) 53, 56, 95, 172, 327, 460
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 5 cut(s) 196, 579, 586, 642, 811
MlyI GAGTC 3 cut(s) 395, 607, 626
MnlI CCTC 7 cut(s) 156, 393, 543, 546, 648, 740, 763
MseI TTAA 4 cut(s) 333, 378, 503, 686
MslI CAYNNNNRTG 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 634
MspR9I CCNGG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 6 cut(s) 11, 20, 73, 149, 439, 680
NcoI CCATGG 1 cut(s) 68
NdeII GATC 1 cut(s) 252
NlaIII CATG 5 cut(s) 72, 594, 718, 820, 841
NlaIV GGNNCC 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 555
NspI RCATGY 1 cut(s) 841
PctI GAATGC 1 cut(s) 139
PkrI GCNGC 3 cut(s) 179, 523, 636
PleI GAGTC 3 cut(s) 394, 606, 625
PpsI GAGTC 3 cut(s) 394, 606, 625
Ppu21I YACGTR 1 cut(s) 562
Psp124BI GAGCTC 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 227
PspPI GGNCC 1 cut(s) 65
PstI CTGCAG 2 cut(s) 182, 523
PvuII CAGCTG 1 cut(s) 634
RseI CAYNNNNRTG 1 cut(s) 132
SacI GAGCTC 1 cut(s) 264
SaqAI TTAA 4 cut(s) 333, 378, 503, 686
SatI GCNGC 3 cut(s) 178, 522, 635
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 3 cut(s) 395, 607, 626
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 2 cut(s) 400, 420
SfcI CTRYAG 2 cut(s) 178, 519
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 5 cut(s) 196, 579, 586, 642, 811
SspI AATATT 1 cut(s) 382
SstI GAGCTC 1 cut(s) 264
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 4 cut(s) 20, 119, 695, 771
TaiI ACGT 1 cut(s) 564
TaqI TCGA 5 cut(s) 290, 418, 732, 759, 806
TasI AATT 5 cut(s) 196, 579, 586, 642, 811
Tru1I TTAA 4 cut(s) 333, 378, 503, 686
Tru9I TTAA 4 cut(s) 333, 378, 503, 686
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 555
TseI GCWGC 3 cut(s) 177, 521, 634
Tsp45I GTSAC 1 cut(s) 555
TspDTI ATGAA 3 cut(s) 54, 579, 654
TspRI CASTG 1 cut(s) 25
XapI RAATTY 2 cut(s) 586, 642
XceI RCATGY 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.