MD13G1039900.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0006759
Physical Location & Seq
Reverse (-)
2720182 .. 2721578
1397 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1039900.v1.1.491

Sequence Viewer

Length: 891 bp
ATGGCTGCTCCTAGAAACCCTAATGAAGAAAATGAGCTCAGAAAAGGGCCTTGGACTCTTGAGGAAGACAATCTGCTTATACATTACATCGCGAACCACGGCGAAGGCCATTGGAACTATTTAGCAAAATTTGCAGGATTGAAGAGGACCGGAAAAAGCTGCAGATTGAGATGGCTAAATTACTTAAAACCCGACATTAAGCGCGGCAACCTTACTCCGCAAGAACAGCTCTTGATCCTTGAACTCCACTCTAAGTGGGGTAACAGGTGGTCTAAAATTGCGCAGCATTTGCCGGGGAGAACAGACAATGAGATAAAGAACTATTGGAGAACAAGAGTGCAAAAACAGGCGCGCCAACTGAACATCGAGTCGAACAGCGTGCAATTTCTCGACGCAGTTCGGGGTTTCTGGATGCCGATTCTGCTGCAAAAGATGAAGCAATCTTCTCGTTCTTCAACCTTGAGCCCTTCTCAGAACTCTGCATCTCCTTCTCTGTCGCCAAATCACACAGTTCCTTCCGTACCACTCCCAACTTCTCCACCTGGCAATGTGACAAACATGTTTGACAACTACCACATGAGTGGAAATTCCAATCTTGCCACCGTCCCAAGTAATATTCTTTCGTCGGAATCTCTTATTTCACAGGTGCCGCAAATGGCAGAACAGTCGACGAGTTTATACCCTGCATTTGACCACATTGGATACAGCAGCTTAAGTCCAGATGGCAGTTACTATGTGGACAACAGTAGCTATGACATGGAGGGTCTCAGCCTGGACCCTGTTTCGGCAATGGGCAATTATGACAATTCACAGTTTGATTGCCAGATGGTAGGAAATGATTGGGTGTTGGACACCATCACTGACAATTTATGGAACATGGACGGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009267 GO:0009605 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010371 GO:0010373 GO:0010468 GO:0010476 GO:0010556 GO:0010558 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0014070 GO:0016036 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0045892 GO:0045934 GO:0046394 GO:0046677 GO:0046885 GO:0046890 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060255 GO:0061458 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

297

Amino Acids

33.46

Weight (kDa)

6.06

Isoelectric Point (pI)

67.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 2.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 75 8.8e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 111 1.1e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 119 9.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 282
AccB1I GGYRCC 1 cut(s) 646
AccI GTMKAC 1 cut(s) 668
AccII CGCG 3 cut(s) 92, 204, 352
AciI CCGC 3 cut(s) 204, 218, 650
AclWI GGATC 1 cut(s) 229
AcsI RAATTY 2 cut(s) 128, 586
AfaI GTAC 1 cut(s) 522
AfiI CCNNNNNNNGG 1 cut(s) 784
AflII CTTAAG 1 cut(s) 712
AflIII ACRYGT 1 cut(s) 558
AgsI TTSAA 3 cut(s) 142, 242, 456
AjnI CCWGG 2 cut(s) 541, 771
AjuI GAANNNNNNNTTGG 2 cut(s) 34, 66
AleI CACNNNNGTG 1 cut(s) 579
AluBI AGCT 5 cut(s) 37, 159, 229, 711, 750
AluI AGCT 5 cut(s) 37, 159, 229, 711, 750
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 770
AlwI GGATC 1 cut(s) 229
AoxI GGCC 2 cut(s) 47, 106
ApeKI GCWGC 5 cut(s) 5, 159, 283, 424, 708
ApoI RAATTY 2 cut(s) 128, 586
AscI GGCGCGCC 1 cut(s) 350
AspLEI GCGC 4 cut(s) 204, 283, 352, 354
AspS9I GGNCC 3 cut(s) 47, 147, 775
AsuC2I CCSGG 1 cut(s) 294
AvaII GGWCC 2 cut(s) 147, 775
BanI GGYRCC 1 cut(s) 646
BanII GRGCYC 2 cut(s) 39, 467
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 4 cut(s) 146, 295, 411, 720
BccI CCATC 4 cut(s) 165, 716, 820, 863
BceAI ACGGC 1 cut(s) 115
BcgI CGANNNNNNTGC 8 cut(s) 361, 395, 406, 428, 440, 462, 648, 682
BciT130I CCWGG 2 cut(s) 543, 773
BciVI GTATCC 1 cut(s) 695
BcnI CCSGG 1 cut(s) 294
BcoDI GTCTC 1 cut(s) 770
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 160
BfrI CTTAAG 1 cut(s) 712
BfuI GTATCC 1 cut(s) 695
BisI GCNGC 7 cut(s) 6, 160, 205, 284, 425, 650, 709
BlsI GCNGC 7 cut(s) 7, 161, 206, 285, 426, 651, 710
Bme1390I CCNGG 3 cut(s) 294, 543, 773
Bme18I GGWCC 2 cut(s) 147, 775
BmgT120I GGNCC 3 cut(s) 47, 147, 775
BmiI GGNNCC 2 cut(s) 648, 777
BmrFI CCNGG 3 cut(s) 294, 543, 773
BmsI GCATC 2 cut(s) 402, 491
BpiI GAAGAC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 454, 486
BpuEI CTTGAG 2 cut(s) 80, 481
BpuMI CCSGG 1 cut(s) 294
BsaI GGTCTC 1 cut(s) 770
BsaJI CCNNGG 3 cut(s) 50, 97, 293
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 784
Bse3DI GCAATG 2 cut(s) 553, 795
BseBI CCWGG 2 cut(s) 543, 773
BseDI CCNNGG 3 cut(s) 50, 97, 293
BseGI GGATG 2 cut(s) 417, 891
BseLI CCNNNNNNNGG 1 cut(s) 784
BseMI GCAATG 2 cut(s) 553, 795
BseMII CTCAG 3 cut(s) 52, 485, 781
BsePI GCGCGC 1 cut(s) 350
BseXI GCAGC 4 cut(s) 146, 295, 411, 720
Bsh1236I CGCG 3 cut(s) 92, 204, 352
BshFI GGCC 2 cut(s) 49, 108
BshNI GGYRCC 1 cut(s) 646
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 2 cut(s) 150, 293
BslFI GGGAC 1 cut(s) 590
BslI CCNNNNNNNGG 1 cut(s) 784
BsmAI GTCTC 1 cut(s) 770
BsmFI GGGAC 1 cut(s) 590
BsnI GGCC 2 cut(s) 49, 108
Bso31I GGTCTC 1 cut(s) 770
Bsp1286I GDGCHC 2 cut(s) 39, 467
Bsp143I GATC 1 cut(s) 234
Bsp68I TCGCGA 1 cut(s) 92
BspACI CCGC 3 cut(s) 204, 218, 650
BspANI GGCC 2 cut(s) 49, 108
BspCNI CTCAG 3 cut(s) 51, 484, 780
BspFNI CGCG 3 cut(s) 92, 204, 352
BspLI GGNNCC 2 cut(s) 648, 777
BspMAI CTGCAG 1 cut(s) 164
BspPI GGATC 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 646
BspTI CTTAAG 1 cut(s) 712
BspTNI GGTCTC 1 cut(s) 770
BsrDI GCAATG 2 cut(s) 553, 795
BssECI CCNNGG 3 cut(s) 50, 97, 293
BssHII GCGCGC 1 cut(s) 350
BssMI GATC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 50
Bst2UI CCWGG 2 cut(s) 543, 773
Bst4CI ACNGT 5 cut(s) 511, 604, 666, 746, 813
Bst6I CTCTTC 1 cut(s) 137
BstAFI CTTAAG 1 cut(s) 712
BstAPI GCANNNNNTGC 2 cut(s) 131, 289
BstC8I GCNNGC 2 cut(s) 352, 380
BstDEI CTNAG 4 cut(s) 38, 252, 471, 767
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 2 cut(s) 417, 891
BstFNI CGCG 3 cut(s) 92, 204, 352
BstHHI GCGC 4 cut(s) 204, 283, 352, 354
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 1 cut(s) 770
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 4 cut(s) 131, 226, 289, 421
BstNI CCWGG 2 cut(s) 543, 773
BstNSI RCATGY 1 cut(s) 562
BstSCI CCNGG 3 cut(s) 292, 541, 771
BstSFI CTRYAG 1 cut(s) 160
BstUI CGCG 3 cut(s) 92, 204, 352
BstV1I GCAGC 4 cut(s) 146, 295, 411, 720
BstV2I GAAGAC 1 cut(s) 72
BstXI CCANNNNNNTGG 1 cut(s) 581
BsuI GTATCC 1 cut(s) 695
BsuRI GGCC 2 cut(s) 49, 108
BtgI CCRYGG 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 73
BtsCI GGATG 2 cut(s) 417, 891
BtsIMutI CAGTG 1 cut(s) 858
BtuMI TCGCGA 1 cut(s) 92
Cac8I GCNNGC 2 cut(s) 352, 380
CfoI GCGC 4 cut(s) 204, 283, 352, 354
Cfr13I GGNCC 3 cut(s) 47, 147, 775
CseI GACGC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 521
CviAII CATG 4 cut(s) 559, 577, 757, 877
CviQI GTAC 1 cut(s) 521
DdeI CTNAG 4 cut(s) 38, 252, 471, 767
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 1 cut(s) 50
Eco24I GRGCYC 2 cut(s) 39, 467
Eco31I GGTCTC 1 cut(s) 770
Eco47I GGWCC 2 cut(s) 147, 775
Eco53kI GAGCTC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 47
EcoRII CCWGG 2 cut(s) 541, 771
EcoT14I CCWWGG 1 cut(s) 50
EcoT38I GRGCYC 2 cut(s) 39, 467
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 4 cut(s) 562, 580, 760, 880
FaqI GGGAC 1 cut(s) 590
FatI CATG 4 cut(s) 558, 576, 756, 876
FblI GTMKAC 1 cut(s) 668
Fnu4HI GCNGC 7 cut(s) 6, 160, 205, 284, 425, 650, 709
FokI GGATG 1 cut(s) 424
FriOI GRGCYC 2 cut(s) 39, 467
Fsp4HI GCNGC 7 cut(s) 6, 160, 205, 284, 425, 650, 709
FspBI CTAG 1 cut(s) 12
FspI TGCGCA 1 cut(s) 282
GlaI GCGC 4 cut(s) 203, 282, 351, 353
GluI GCNGC 7 cut(s) 6, 160, 205, 284, 425, 650, 709
HaeIII GGCC 2 cut(s) 49, 108
HapII CCGG 2 cut(s) 150, 293
HgaI GACGC 1 cut(s) 401
HhaI GCGC 4 cut(s) 204, 283, 352, 354
Hin1II CATG 4 cut(s) 562, 580, 760, 880
Hin6I GCGC 4 cut(s) 202, 281, 350, 352
HinP1I GCGC 4 cut(s) 202, 281, 350, 352
HincII GTYRAC 1 cut(s) 669
HindII GTYRAC 1 cut(s) 669
HinfI GANTC 4 cut(s) 55, 368, 418, 629
HpaII CCGG 2 cut(s) 150, 293
Hpy166II GTNNAC 2 cut(s) 669, 739
Hpy188I TCNGA 3 cut(s) 41, 474, 628
Hpy188III TCNNGA 6 cut(s) 59, 91, 232, 389, 409, 719
Hpy8I GTNNAC 2 cut(s) 669, 739
Hpy99I CGWCG 3 cut(s) 395, 628, 673
HpyAV CCTTC 4 cut(s) 98, 477, 498, 525
HpyCH4III ACNGT 5 cut(s) 511, 604, 666, 746, 813
HpyCH4V TGCA 7 cut(s) 134, 162, 340, 382, 427, 482, 686
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 226, 289, 421
HpyF3I CTNAG 4 cut(s) 38, 252, 471, 767
Hsp92II CATG 4 cut(s) 562, 580, 760, 880
HspAI GCGC 4 cut(s) 202, 281, 350, 352
Kzo9I GATC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 13
Lsp1109I GCAGC 4 cut(s) 146, 295, 411, 720
LweI GCATC 2 cut(s) 402, 491
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 3 cut(s) 260, 550, 728
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 5 cut(s) 38, 77, 154, 435, 444
MhlI GDGCHC 2 cut(s) 39, 467
MluCI AATT 8 cut(s) 128, 178, 276, 383, 586, 796, 805, 865
MlyI GAGTC 2 cut(s) 49, 377
MmeI TCCRAC 2 cut(s) 606, 828
MnlI CCTC 3 cut(s) 55, 138, 754
MseI TTAA 3 cut(s) 185, 198, 713
MslI CAYNNNNRTG 1 cut(s) 579
MspCI CTTAAG 1 cut(s) 712
MspI CCGG 2 cut(s) 150, 293
MspR9I CCNGG 3 cut(s) 294, 543, 773
MvaI CCWGG 2 cut(s) 543, 773
MvnI CGCG 3 cut(s) 92, 204, 352
MwoI GCNNNNNNNGC 4 cut(s) 131, 226, 289, 421
NciI CCSGG 1 cut(s) 294
NdeII GATC 1 cut(s) 234
NlaIII CATG 4 cut(s) 562, 580, 760, 880
NlaIV GGNNCC 2 cut(s) 648, 777
NmuCI GTSAC 1 cut(s) 550
NruI TCGCGA 1 cut(s) 92
NsbI TGCGCA 1 cut(s) 282
NspI RCATGY 1 cut(s) 562
OliI CACNNNNGTG 1 cut(s) 579
PalAI GGCGCGCC 1 cut(s) 350
PauI GCGCGC 1 cut(s) 350
PciI ACATGT 1 cut(s) 558
PfeI GAWTC 2 cut(s) 418, 629
PkrI GCNGC 7 cut(s) 7, 161, 206, 285, 426, 651, 710
PleI GAGTC 2 cut(s) 49, 376
PpsI GAGTC 2 cut(s) 49, 376
PscI ACATGT 1 cut(s) 558
Psp124BI GAGCTC 1 cut(s) 39
Psp6I CCWGG 2 cut(s) 541, 771
PspGI CCWGG 2 cut(s) 541, 771
PspN4I GGNNCC 2 cut(s) 648, 777
PspPI GGNCC 3 cut(s) 47, 147, 775
PstI CTGCAG 1 cut(s) 164
PteI GCGCGC 1 cut(s) 350
RruI TCGCGA 1 cut(s) 92
RsaI GTAC 1 cut(s) 522
RsaNI GTAC 1 cut(s) 521
RseI CAYNNNNRTG 1 cut(s) 579
SacI GAGCTC 1 cut(s) 39
SalI GTCGAC 1 cut(s) 667
SaqAI TTAA 3 cut(s) 185, 198, 713
SatI GCNGC 7 cut(s) 6, 160, 205, 284, 425, 650, 709
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 3 cut(s) 47, 147, 775
SchI GAGTC 2 cut(s) 49, 377
ScrFI CCNGG 3 cut(s) 294, 543, 773
SduI GDGCHC 2 cut(s) 39, 467
SfaNI GCATC 2 cut(s) 402, 491
SfcI CTRYAG 1 cut(s) 160
SgsI GGCGCGCC 1 cut(s) 350
SinI GGWCC 2 cut(s) 147, 775
SmiMI CAYNNNNRTG 1 cut(s) 579
SmlI CTYRAG 3 cut(s) 59, 460, 712
SmoI CTYRAG 3 cut(s) 59, 460, 712
Sse9I AATT 8 cut(s) 128, 178, 276, 383, 586, 796, 805, 865
SsiI CCGC 3 cut(s) 204, 218, 650
SspI AATATT 1 cut(s) 616
SspMI CTAG 1 cut(s) 12
SstI GAGCTC 1 cut(s) 39
StyD4I CCNGG 3 cut(s) 292, 541, 771
StyI CCWWGG 1 cut(s) 50
TaaI ACNGT 5 cut(s) 511, 604, 666, 746, 813
TaqI TCGA 4 cut(s) 366, 371, 390, 668
TasI AATT 8 cut(s) 128, 178, 276, 383, 586, 796, 805, 865
TauI GCSGC 2 cut(s) 207, 652
TfiI GAWTC 2 cut(s) 418, 629
Tru1I TTAA 3 cut(s) 185, 198, 713
Tru9I TTAA 3 cut(s) 185, 198, 713
TscAI CASTG 1 cut(s) 865
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 5 cut(s) 5, 159, 283, 424, 708
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 2 cut(s) 39, 449
TspGWI ACGGA 1 cut(s) 508
TspRI CASTG 1 cut(s) 865
Vha464I CTTAAG 1 cut(s) 712
VpaK11BI GGWCC 2 cut(s) 147, 775
XapI RAATTY 2 cut(s) 128, 586
XceI RCATGY 1 cut(s) 562
XmiI GTMKAC 1 cut(s) 668
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.