Rw4G029300
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0006759
Physical Location & Seq
Reverse (-)
55975163 .. 55976557
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G029300.1

Sequence Viewer

Length: 903 bp
ATGGCTGGTGTTGCAAACAGTGTGTACACAAGTCCTAATGAAGAAGAGAATGAGATGAGAAAGGGGCCATGGACGCTTGACGAAGACACCCTGCTCATACATTACATTGCCAACCACGGCGAAGGACATTGGAATGCCTTAGCAAAATGTGCAGGATTGAAGAGGACAGGAAAAAGCTGCAGATTAAGATGGTTGAATTATTTGAAACCTGACATCAAGCGTGGGAACCTTACTCCACAAGAACAACTCTTGATCCTTGAACTCCATGCCAAGTGGGGTAACAGGTGGTCGAAAATAGCACAACATTTGCCAGGAAGAACAGACAATGAGATTAAGAACTACTGGAGAACAAGGGTGCAAAAACAAGCGCGCCAACTTAATATTGAGTCTGATAGCAAGAGGTTTCTTGATGCGGTTCGATGTTTCTGGATGCCGACTTTGCGTCAGAAGATGGAGCAAACTTCTTCACTTAGTTTAGACCCACCTTCTTCTTCTTCTTCTTCTCATTCTAATTACTTGACTTCTCAGATCTCTATAGCTCCTTCTCTGTCGACGTCTCCACAAACTTGCTCGGTTCCTTCTTCTCCGCCAAGCAAGGTGGTCTCACACGTATCTGATTATTCCCCAATTGGAACTTCAAGCCCAAGTCATAATAGTCTTTCCTCGGATTCTCTTTTTTTACAGCTGCCTCAAATTACAGAACAACCAGCAAGTTCATCCTATGCCTTTGAAGCGCTAAATGACAATTATTATATGGACTATGACATGGAGGGTTTTAGCCTTGACCCTGTTTCAGAAATGGCAGCTTTTGACACTTCACCGTTTGATTGCCAGATGGCAGAAAGCGATTGGATACCAAGCAATTACATGACTGACACTTTATGGAACATGCAGGGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009267 GO:0009605 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010371 GO:0010373 GO:0010468 GO:0010476 GO:0010556 GO:0010558 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0014070 GO:0016036 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0045892 GO:0045934 GO:0046394 GO:0046677 GO:0046885 GO:0046890 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060255 GO:0061458 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

300

Amino Acids

33.87

Weight (kDa)

5.62

Isoelectric Point (pI)

70.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 21 - 68 1.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 24 - 81 5.6e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 74 - 117 7.9e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 78 - 124 2.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 557
AccI GTMKAC 1 cut(s) 551
AccII CGCG 1 cut(s) 370
AciI CCGC 2 cut(s) 413, 587
AclWI GGATC 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 554
AfaI GTAC 1 cut(s) 26
AfeI AGCGCT 1 cut(s) 735
AflIII ACRYGT 1 cut(s) 607
AgsI TTSAA 6 cut(s) 160, 196, 205, 260, 639, 731
AhdI GACNNNNNGTC 1 cut(s) 441
AjnI CCWGG 1 cut(s) 310
AjuI GAANNNNNNNTTGG 2 cut(s) 619, 651
AluBI AGCT 4 cut(s) 177, 539, 685, 806
AluI AGCT 4 cut(s) 177, 539, 685, 806
Alw26I GTCTC 2 cut(s) 561, 607
AlwI GGATC 1 cut(s) 247
Aor51HI AGCGCT 1 cut(s) 735
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 3 cut(s) 177, 685, 803
AspLEI GCGC 3 cut(s) 370, 372, 736
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 810
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 3 cut(s) 164, 672, 815
BccI CCATC 3 cut(s) 183, 445, 829
BceAI ACGGC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 312
BciVI GTATCC 1 cut(s) 846
BcoDI GTCTC 2 cut(s) 561, 607
BfmI CTRYAG 2 cut(s) 178, 534
BfoI RGCGCY 1 cut(s) 737
BfuI GTATCC 1 cut(s) 846
BglII AGATCT 1 cut(s) 528
BisI GCNGC 3 cut(s) 178, 686, 804
BlsI GCNGC 3 cut(s) 179, 687, 805
Bme1390I CCNGG 1 cut(s) 312
BmeRI GACNNNNNGTC 1 cut(s) 441
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 3 cut(s) 66, 227, 576
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 2 cut(s) 400, 420
BpiI GAAGAC 1 cut(s) 90
BpmI CTGGAG 1 cut(s) 364
Bpu10I CCTNAGC 1 cut(s) 139
BsaAI YACGTR 1 cut(s) 610
BsaHI GRCGYC 1 cut(s) 554
BsaI GGTCTC 1 cut(s) 607
BsaJI CCNNGG 3 cut(s) 68, 115, 663
Bse1I ACTGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 68, 115, 663
BseGI GGATG 3 cut(s) 435, 716, 903
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 539
BseNI ACTGG 1 cut(s) 347
BsePI GCGCGC 1 cut(s) 368
BseXI GCAGC 3 cut(s) 164, 672, 815
BsgI GTGCAG 1 cut(s) 171
Bsh1236I CGCG 1 cut(s) 370
BshFI GGCC 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 561, 607
BsmBI CGTCTC 1 cut(s) 561
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 1 cut(s) 67
Bso31I GGTCTC 1 cut(s) 607
Bsp1407I TGTACA 1 cut(s) 24
Bsp143I GATC 2 cut(s) 252, 528
Bsp19I CCATGG 1 cut(s) 68
BspACI CCGC 2 cut(s) 413, 587
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 538
BspFNI CGCG 1 cut(s) 370
BspLI GGNNCC 3 cut(s) 66, 227, 576
BspMAI CTGCAG 1 cut(s) 182
BspPI GGATC 1 cut(s) 247
BspTNI GGTCTC 1 cut(s) 607
BsrDI GCAATG 1 cut(s) 105
BsrGI TGTACA 1 cut(s) 24
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 3 cut(s) 68, 115, 663
BssHII GCGCGC 1 cut(s) 368
BssMI GATC 2 cut(s) 252, 528
BssNI GRCGYC 1 cut(s) 554
BssT1I CCWWGG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 20, 822
Bst6I CTCTTC 2 cut(s) 39, 155
BstACI GRCGYC 1 cut(s) 554
BstAPI GCANNNNNTGC 1 cut(s) 149
BstAUI TGTACA 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 610
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 3 cut(s) 139, 470, 525
BstDSI CCRYGG 2 cut(s) 68, 115
BstF5I GGATG 3 cut(s) 435, 716, 903
BstFNI CGCG 1 cut(s) 370
BstH2I RGCGCY 1 cut(s) 737
BstHHI GCGC 3 cut(s) 370, 372, 736
BstKTI GATC 2 cut(s) 255, 531
BstMAI GTCTC 2 cut(s) 561, 607
BstMBI GATC 2 cut(s) 252, 528
BstMWI GCNNNNNNNGC 5 cut(s) 11, 73, 149, 439, 731
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 1 cut(s) 892
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 2 cut(s) 178, 534
BstUI CGCG 1 cut(s) 370
BstV1I GCAGC 3 cut(s) 164, 672, 815
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 528
BstYI RGATCY 1 cut(s) 528
BsuI GTATCC 1 cut(s) 846
BsuRI GGCC 1 cut(s) 67
BtgI CCRYGG 2 cut(s) 68, 115
BtsCI GGATG 3 cut(s) 435, 716, 903
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 370
CfoI GCGC 3 cut(s) 370, 372, 736
Cfr13I GGNCC 1 cut(s) 65
CseI GACGC 2 cut(s) 82, 431
Csp6I GTAC 1 cut(s) 25
CspCI CAANNNNNGTGG 2 cut(s) 579, 614
CviAII CATG 5 cut(s) 69, 266, 766, 868, 889
CviJI RGCY 8 cut(s) 5, 67, 177, 539, 642, 685, 780, 806
CviKI_1 RGCY 8 cut(s) 5, 67, 177, 539, 642, 685, 780, 806
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 3 cut(s) 139, 470, 525
DpnI GATC 2 cut(s) 254, 530
DpnII GATC 2 cut(s) 252, 528
DriI GACNNNNNGTC 1 cut(s) 441
Eam1104I CTCTTC 2 cut(s) 39, 155
Eam1105I GACNNNNNGTC 1 cut(s) 441
EarI CTCTTC 2 cut(s) 39, 155
EciI GGCGGA 1 cut(s) 576
Eco130I CCWWGG 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 607
Eco47III AGCGCT 1 cut(s) 735
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 561
FaeI CATG 5 cut(s) 72, 269, 769, 871, 892
FatI CATG 5 cut(s) 68, 265, 765, 867, 888
FblI GTMKAC 1 cut(s) 551
Fnu4HI GCNGC 3 cut(s) 178, 686, 804
FokI GGATG 2 cut(s) 442, 703
Fsp4HI GCNGC 3 cut(s) 178, 686, 804
GlaI GCGC 3 cut(s) 369, 371, 735
GluI GCNGC 3 cut(s) 178, 686, 804
GsuI CTGGAG 1 cut(s) 364
HaeII RGCGCY 1 cut(s) 737
HaeIII GGCC 1 cut(s) 67
HgaI GACGC 2 cut(s) 82, 431
HhaI GCGC 3 cut(s) 370, 372, 736
Hin1I GRCGYC 1 cut(s) 554
Hin1II CATG 5 cut(s) 72, 269, 769, 871, 892
Hin6I GCGC 3 cut(s) 368, 370, 734
HinP1I GCGC 3 cut(s) 368, 370, 734
HincII GTYRAC 1 cut(s) 552
HindII GTYRAC 1 cut(s) 552
HinfI GANTC 2 cut(s) 386, 668
HphI GGTGA 1 cut(s) 810
Hpy166II GTNNAC 3 cut(s) 25, 27, 552
Hpy188I TCNGA 6 cut(s) 391, 447, 528, 616, 667, 796
Hpy188III TCNNGA 3 cut(s) 250, 407, 427
Hpy8I GTNNAC 3 cut(s) 25, 27, 552
Hpy99I CGWCG 1 cut(s) 556
HpyAV CCTTC 4 cut(s) 116, 495, 552, 588
HpyCH4III ACNGT 2 cut(s) 20, 822
HpyCH4IV ACGT 2 cut(s) 554, 609
HpyCH4V TGCA 5 cut(s) 14, 152, 180, 358, 892
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 73, 149, 439, 731
HpyF3I CTNAG 3 cut(s) 139, 470, 525
HpySE526I ACGT 2 cut(s) 554, 609
Hsp92I GRCGYC 1 cut(s) 554
Hsp92II CATG 5 cut(s) 72, 269, 769, 871, 892
HspAI GCGC 3 cut(s) 368, 370, 734
Kzo9I GATC 2 cut(s) 252, 528
LmnI GCTCC 2 cut(s) 454, 544
Lsp1109I GCAGC 3 cut(s) 164, 672, 815
LweI GCATC 2 cut(s) 400, 420
MaeII ACGT 2 cut(s) 554, 609
MaeIII GTNAC 1 cut(s) 278
MalI GATC 2 cut(s) 254, 530
MboI GATC 2 cut(s) 252, 528
MfeI CAATTG 1 cut(s) 627
MflI RGATCY 1 cut(s) 528
MluCI AATT 6 cut(s) 196, 511, 627, 693, 745, 862
MlyI GAGTC 1 cut(s) 395
MnlI CCTC 5 cut(s) 156, 393, 673, 699, 763
MseI TTAA 3 cut(s) 185, 333, 378
MslI CAYNNNNRTG 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 685
MspR9I CCNGG 1 cut(s) 312
MunI CAATTG 1 cut(s) 627
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 1 cut(s) 312
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 5 cut(s) 11, 73, 149, 439, 731
NcoI CCATGG 1 cut(s) 68
NdeII GATC 2 cut(s) 252, 528
NlaIII CATG 5 cut(s) 72, 269, 769, 871, 892
NlaIV GGNNCC 3 cut(s) 66, 227, 576
NspI RCATGY 1 cut(s) 892
PauI GCGCGC 1 cut(s) 368
PctI GAATGC 1 cut(s) 139
PfeI GAWTC 1 cut(s) 668
PkrI GCNGC 3 cut(s) 179, 687, 805
PleI GAGTC 1 cut(s) 394
PpsI GAGTC 1 cut(s) 394
Ppu21I YACGTR 1 cut(s) 610
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 3 cut(s) 66, 227, 576
PspPI GGNCC 1 cut(s) 65
PstI CTGCAG 1 cut(s) 182
PsuI RGATCY 1 cut(s) 528
PteI GCGCGC 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 685
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 132
SalI GTCGAC 1 cut(s) 550
SaqAI TTAA 3 cut(s) 185, 333, 378
SatI GCNGC 3 cut(s) 178, 686, 804
Sau3AI GATC 2 cut(s) 252, 528
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 1 cut(s) 312
SfaNI GCATC 2 cut(s) 400, 420
SfcI CTRYAG 2 cut(s) 178, 534
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 6 cut(s) 196, 511, 627, 693, 745, 862
SsiI CCGC 2 cut(s) 413, 587
SspI AATATT 1 cut(s) 382
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 1 cut(s) 68
TaaI ACNGT 2 cut(s) 20, 822
TaiI ACGT 2 cut(s) 557, 612
TaqI TCGA 3 cut(s) 290, 418, 551
TasI AATT 6 cut(s) 196, 511, 627, 693, 745, 862
TatI WGTACW 1 cut(s) 24
TfiI GAWTC 1 cut(s) 668
Tru1I TTAA 3 cut(s) 185, 333, 378
Tru9I TTAA 3 cut(s) 185, 333, 378
TscAI CASTG 1 cut(s) 25
TseI GCWGC 3 cut(s) 177, 685, 803
TspDTI ATGAA 2 cut(s) 54, 705
TspRI CASTG 1 cut(s) 25
XceI RCATGY 1 cut(s) 892
XmiI GTMKAC 1 cut(s) 551
ZraI GACGTC 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.