Prupe.1G313300_v2.0.a1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0006759
Physical Location & Seq
Forward (+)
30343380 .. 30344967
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G313300.1

Sequence Viewer

Length: 918 bp
ATGGCTGCTGTCACAAAGAGTGCATGCAATCCTAATGAAGAGGAGATTGAGCTAAGACGAGGGCCATGGACTCTTGAAGAAGACACTCTGCTTATACATTACATTGCTAGTCACGGGGAAGGCCATTGGAATTCGTTAGCAAAATGTGCAGGATTGAAGAGGACTGGAAAAAGCTGCAGATTGAGATGGCTAAACTATTTAAAACCTGACATTAAGCGTGGCAACCTCACTCCACAAGAACAACTCATGATCCTTGAACTCCATTCCAAGTGGGGTAACAGGTGGTCTAAAATTGCACAGCATTTGCCAGGAAGAACAGACAATGAGATAAAGAACTATTGGAGAACAAGGGTCCAAAAACAAGCACGTCAGCTCAATATCGAGTCCAACAGCAAGAGGTTCCTTGACGCGGTTCGATGTTTCTGGATGCCAACGTTGCTTCAAAAGATGGAGCAATCTTCTTCTTCTTACTTGCCAACAACCTTGAGTTCTCAGAACTCTGCATCTCCTTCTCTGTCACCTAATTGCTCTGCTCCTTCTATTTCACTCCCAACTTCTCCACCAAGCAAGGTTTCACAAATATTTGATCATCCCATTAATGGAAATTCCAGTTCTGTCACAAGCCCAAGTATCTTTTCCTCAGATTCTTTGATTTCCCAGCTGCCTCAAACTTCAGAACGCCTAACAAGTCCAACTCATGCTTTTGACCACACCGTCTACAGCAGCAGCCCAGCTTTAAATGACTGTTACTATGTGGACACCAGCAGTGGCTATGCCTATGACATGGAGGGTCCCAACCTGGACCCTGCTTCGGCAATTTGCGATTTTGATAATCAACAGTTTGATTGCCAGATGACAGCAGGTGATTGGATGTTGGACAACATGACTGACACTTTATGGAACATGGAGGGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009267 GO:0009605 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010371 GO:0010373 GO:0010468 GO:0010476 GO:0010556 GO:0010558 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0014070 GO:0016036 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0045892 GO:0045934 GO:0046394 GO:0046677 GO:0046885 GO:0046890 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060255 GO:0061458 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

306

Amino Acids

34.31

Weight (kDa)

5.91

Isoelectric Point (pI)

67.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 851
AasI GACNNNNNNGTC 1 cut(s) 713
Acc36I ACCTGC 1 cut(s) 851
AccI GTMKAC 1 cut(s) 717
AccII CGCG 1 cut(s) 410
AciI CCGC 1 cut(s) 410
AclI AACGTT 1 cut(s) 434
AclWI GGATC 1 cut(s) 244
AcsI RAATTY 2 cut(s) 130, 604
AcuI CTGAAG 1 cut(s) 657
AfiI CCNNNNNNNGG 3 cut(s) 409, 599, 811
AgsI TTSAA 4 cut(s) 77, 157, 257, 443
AjiI CACGTC 1 cut(s) 368
AjnI CCWGG 2 cut(s) 307, 798
AjuI GAANNNNNNNTTGG 4 cut(s) 556, 588, 619, 651
AluBI AGCT 5 cut(s) 52, 174, 373, 661, 734
AluI AGCT 5 cut(s) 52, 174, 373, 661, 734
AlwI GGATC 1 cut(s) 244
AoxI GGCC 2 cut(s) 62, 121
ApeKI GCWGC 5 cut(s) 5, 174, 661, 723, 726
ApoI RAATTY 2 cut(s) 130, 604
AseI ATTAAT 1 cut(s) 597
AspS9I GGNCC 4 cut(s) 62, 352, 791, 802
AsuHPI GGTGA 2 cut(s) 510, 875
AvaII GGWCC 3 cut(s) 352, 791, 802
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 4 cut(s) 161, 648, 735, 738
BccI CCATC 2 cut(s) 180, 442
BciT130I CCWGG 2 cut(s) 309, 800
BclI TGATCA 1 cut(s) 586
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 2 cut(s) 175, 718
BfuAI ACCTGC 1 cut(s) 851
BisI GCNGC 5 cut(s) 6, 175, 662, 724, 727
BlsI GCNGC 5 cut(s) 7, 176, 663, 725, 728
Bme1390I CCNGG 2 cut(s) 309, 800
Bme18I GGWCC 3 cut(s) 352, 791, 802
BmgBI CACGTC 1 cut(s) 368
BmgT120I GGNCC 4 cut(s) 62, 352, 791, 802
BmiI GGNNCC 5 cut(s) 353, 401, 792, 793, 804
BmrFI CCNGG 2 cut(s) 309, 800
BmsI GCATC 2 cut(s) 417, 512
BpiI GAAGAC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 505
BsaJI CCNNGG 1 cut(s) 65
BsaXI ACNNNNNCTCC 1 cut(s) 899
Bsc4I CCNNNNNNNGG 3 cut(s) 409, 599, 811
Bse1I ACTGG 2 cut(s) 169, 609
Bse3DI GCAATG 1 cut(s) 102
BseBI CCWGG 2 cut(s) 309, 800
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 4 cut(s) 432, 589, 876, 918
BseLI CCNNNNNNNGG 3 cut(s) 409, 599, 811
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 2 cut(s) 506, 654
BseNI ACTGG 2 cut(s) 169, 609
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 4 cut(s) 161, 648, 735, 738
BseYI CCCAGC 2 cut(s) 657, 730
BsgI GTGCAG 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 410
BshFI GGCC 2 cut(s) 64, 123
BslFI GGGAC 1 cut(s) 777
BslI CCNNNNNNNGG 3 cut(s) 409, 599, 811
BsmFI GGGAC 1 cut(s) 777
BsnI GGCC 2 cut(s) 64, 123
Bsp143I GATC 2 cut(s) 249, 586
Bsp19I CCATGG 1 cut(s) 65
BspACI CCGC 1 cut(s) 410
BspANI GGCC 2 cut(s) 64, 123
BspCNI CTCAG 2 cut(s) 505, 653
BspFNI CGCG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 5 cut(s) 353, 401, 792, 793, 804
BspMAI CTGCAG 1 cut(s) 179
BspMI ACCTGC 1 cut(s) 851
BspPI GGATC 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 102
BsrI ACTGG 2 cut(s) 169, 609
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 2 cut(s) 249, 586
BssT1I CCWWGG 1 cut(s) 65
Bst2UI CCWGG 2 cut(s) 309, 800
Bst4CI ACNGT 3 cut(s) 715, 746, 840
Bst6I CTCTTC 2 cut(s) 33, 152
BstAPI GCANNNNNTGC 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 3 cut(s) 53, 492, 640
BstDSI CCRYGG 1 cut(s) 65
BstF5I GGATG 4 cut(s) 432, 589, 876, 918
BstFNI CGCG 1 cut(s) 410
BstKTI GATC 2 cut(s) 252, 589
BstMBI GATC 2 cut(s) 249, 586
BstMWI GCNNNNNNNGC 2 cut(s) 146, 436
BstNI CCWGG 2 cut(s) 309, 800
BstNSI RCATGY 1 cut(s) 27
BstSCI CCNGG 2 cut(s) 307, 798
BstSFI CTRYAG 2 cut(s) 175, 718
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 4 cut(s) 161, 648, 735, 738
BstV2I GAAGAC 1 cut(s) 87
BsuRI GGCC 2 cut(s) 64, 123
BtgI CCRYGG 1 cut(s) 65
BtrI CACGTC 1 cut(s) 368
BtsCI GGATG 4 cut(s) 432, 589, 876, 918
BtsI GCAGTG 1 cut(s) 772
BtsIMutI CAGTG 1 cut(s) 772
BveI ACCTGC 1 cut(s) 851
Cac8I GCNNGC 1 cut(s) 25
CciI TCATGA 1 cut(s) 246
Cfr13I GGNCC 4 cut(s) 62, 352, 791, 802
CseI GACGC 1 cut(s) 416
CviAII CATG 7 cut(s) 24, 66, 247, 698, 784, 883, 904
DdeI CTNAG 3 cut(s) 53, 492, 640
DpnI GATC 2 cut(s) 251, 588
DpnII GATC 2 cut(s) 249, 586
DraI TTTAAA 2 cut(s) 201, 738
DrdI GACNNNNNNGTC 1 cut(s) 713
DseDI GACNNNNNNGTC 1 cut(s) 713
Eam1104I CTCTTC 2 cut(s) 33, 152
EarI CTCTTC 2 cut(s) 33, 152
Eco130I CCWWGG 1 cut(s) 65
Eco47I GGWCC 3 cut(s) 352, 791, 802
Eco57I CTGAAG 1 cut(s) 657
EcoO109I RGGNCCY 1 cut(s) 791
EcoRI GAATTC 1 cut(s) 130
EcoRII CCWGG 2 cut(s) 307, 798
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 7 cut(s) 27, 69, 250, 701, 787, 886, 907
FaqI GGGAC 1 cut(s) 777
FatI CATG 7 cut(s) 23, 65, 246, 697, 783, 882, 903
FbaI TGATCA 1 cut(s) 586
FblI GTMKAC 1 cut(s) 717
Fnu4HI GCNGC 5 cut(s) 6, 175, 662, 724, 727
FokI GGATG 3 cut(s) 439, 576, 883
Fsp4HI GCNGC 5 cut(s) 6, 175, 662, 724, 727
FspBI CTAG 1 cut(s) 108
GluI GCNGC 5 cut(s) 6, 175, 662, 724, 727
GsaI CCCAGC 2 cut(s) 661, 734
HaeIII GGCC 2 cut(s) 64, 123
HgaI GACGC 1 cut(s) 416
Hin1II CATG 7 cut(s) 27, 69, 250, 701, 787, 886, 907
HinfI GANTC 3 cut(s) 70, 383, 644
HphI GGTGA 2 cut(s) 510, 875
Hpy166II GTNNAC 2 cut(s) 718, 757
Hpy188I TCNGA 3 cut(s) 495, 643, 676
Hpy188III TCNNGA 3 cut(s) 74, 247, 424
Hpy8I GTNNAC 2 cut(s) 718, 757
HpyAV CCTTC 3 cut(s) 113, 519, 546
HpyCH4III ACNGT 3 cut(s) 715, 746, 840
HpyCH4IV ACGT 2 cut(s) 367, 434
HpyCH4V TGCA 6 cut(s) 23, 27, 149, 177, 296, 503
HpyF10VI GCNNNNNNNGC 2 cut(s) 146, 436
HpyF3I CTNAG 3 cut(s) 53, 492, 640
HpySE526I ACGT 2 cut(s) 367, 434
Hsp92II CATG 7 cut(s) 27, 69, 250, 701, 787, 886, 907
KflI GGGWCCC 1 cut(s) 791
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 2 cut(s) 249, 586
LmnI GCTCC 2 cut(s) 451, 538
Lsp1109I GCAGC 4 cut(s) 161, 648, 735, 738
LweI GCATC 2 cut(s) 417, 512
MaeI CTAG 1 cut(s) 108
MaeII ACGT 2 cut(s) 367, 434
MaeIII GTNAC 6 cut(s) 10, 110, 275, 516, 616, 746
MalI GATC 2 cut(s) 251, 588
MboI GATC 2 cut(s) 249, 586
MboII GAAGA 8 cut(s) 50, 89, 92, 169, 324, 450, 453, 456
MluCI AATT 5 cut(s) 130, 291, 523, 604, 816
MlyI GAGTC 2 cut(s) 64, 392
MmeI TCCRAC 3 cut(s) 411, 716, 855
MnlI CCTC 9 cut(s) 34, 53, 153, 236, 390, 649, 675, 781, 901
MseI TTAA 4 cut(s) 200, 213, 597, 737
MspA1I CMGCKG 1 cut(s) 661
MspR9I CCNGG 2 cut(s) 309, 800
MvaI CCWGG 2 cut(s) 309, 800
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 2 cut(s) 146, 436
NcoI CCATGG 1 cut(s) 65
NdeII GATC 2 cut(s) 249, 586
NlaIII CATG 7 cut(s) 27, 69, 250, 701, 787, 886, 907
NlaIV GGNNCC 5 cut(s) 353, 401, 792, 793, 804
NmuCI GTSAC 4 cut(s) 10, 110, 516, 616
NspI RCATGY 1 cut(s) 27
PaeI GCATGC 1 cut(s) 27
PagI TCATGA 1 cut(s) 246
PaqCI CACCTGC 1 cut(s) 851
PfeI GAWTC 1 cut(s) 644
PkrI GCNGC 5 cut(s) 7, 176, 663, 725, 728
PleI GAGTC 2 cut(s) 64, 391
PpsI GAGTC 2 cut(s) 64, 391
PpuMI RGGWCCY 1 cut(s) 791
PshBI ATTAAT 1 cut(s) 597
Psp1406I AACGTT 1 cut(s) 434
Psp5II RGGWCCY 1 cut(s) 791
Psp6I CCWGG 2 cut(s) 307, 798
PspFI CCCAGC 2 cut(s) 657, 730
PspGI CCWGG 2 cut(s) 307, 798
PspN4I GGNNCC 5 cut(s) 353, 401, 792, 793, 804
PspPI GGNCC 4 cut(s) 62, 352, 791, 802
PspPPI RGGWCCY 1 cut(s) 791
PstI CTGCAG 1 cut(s) 179
PvuII CAGCTG 1 cut(s) 661
SaqAI TTAA 4 cut(s) 200, 213, 597, 737
SatI GCNGC 5 cut(s) 6, 175, 662, 724, 727
Sau3AI GATC 2 cut(s) 249, 586
Sau96I GGNCC 4 cut(s) 62, 352, 791, 802
SchI GAGTC 2 cut(s) 64, 392
ScrFI CCNGG 2 cut(s) 309, 800
SfaNI GCATC 2 cut(s) 417, 512
SfcI CTRYAG 2 cut(s) 175, 718
SinI GGWCC 3 cut(s) 352, 791, 802
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
SphI GCATGC 1 cut(s) 27
Sse9I AATT 5 cut(s) 130, 291, 523, 604, 816
SsiI CCGC 1 cut(s) 410
SspI AATATT 1 cut(s) 582
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 307, 798
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 3 cut(s) 715, 746, 840
TaiI ACGT 2 cut(s) 370, 437
TaqI TCGA 2 cut(s) 381, 415
TasI AATT 5 cut(s) 130, 291, 523, 604, 816
TfiI GAWTC 1 cut(s) 644
Tru1I TTAA 4 cut(s) 200, 213, 597, 737
Tru9I TTAA 4 cut(s) 200, 213, 597, 737
TscAI CASTG 1 cut(s) 772
TseFI GTSAC 4 cut(s) 10, 110, 516, 616
TseI GCWGC 5 cut(s) 5, 174, 661, 723, 726
Tsp45I GTSAC 4 cut(s) 10, 110, 516, 616
TspDTI ATGAA 1 cut(s) 51
TspRI CASTG 1 cut(s) 772
VpaK11BI GGWCC 3 cut(s) 352, 791, 802
VspI ATTAAT 1 cut(s) 597
XapI RAATTY 2 cut(s) 130, 604
XceI RCATGY 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 717
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.