MD16G1040800.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0006759
Physical Location & Seq
Reverse (-)
2896058 .. 2897480
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1040800.v1.1.491

Sequence Viewer

Length: 897 bp
ATGGCTGCTCCTACAACCCCAAATGAAGAAAATGAGTTCAGAAGAGGGCCATGGACTCTTGAGGAAGACAATCTGCTTATACATTACATCGTGAACCACGGCGAAGGCCATTGGAATTCTGTAGCAAAACTTGCAGGATTGAAGAGGACCGGAAAAAGCTGCAGATTGAGATGGCTAAATTACTTAAAACCCGACATTAAGCGCGGGAACCTTACTCCGCAAGAACAGCTCATGATCCTTGAACTCCACTCCAAGTGGGGTAACAGGTGGTCTAAAATTGCGCAGCATTTGCCGGGAAGAACAGACAATGAGATAAAGAACTATTGGAGAACAAGGGTGCAAAAACAGGCGCGCCAACTGAACATCGAGTCGAACAGCGAGCAATTTCTCGATGCAGTTCGGGGTTTCTGGGTGCCGACTCTGCTGCAAAAAATGGAGCAATCTTCTTCTTCTTGTTCTTCAACCTTGAGCACTTCTCAGAACTCCGCATCTCCTTGTCTGTCACCAAATCACGCAGCTCCTTCCGTGCCACTCTCAACCTCTCCACCTAGCAATGCGACAAACGTGTTGGACAATTATCACATTAGTGGAAATTCCAATCTTGCCACCGTCCCAAGTAATATCCTTTCGGCGGATTCTTTTGTTTCACACGTGCCTCAAATGGCAGAACCGTCCACGAGTTTTCCCCCTGCATATTACCGACTTGGCTACAGCAGCTTAAGTCCAGATGGCAGTCACTACGTGGACAGCAGTAGCTATGACGTGGAGGGTCTCAGCCTGGACCCTGTTTCGGCAATGGGCAATCTTGGCAATTCACAGTTTGATTGCCAGATGGGGGGAAATGATTGGATGTTGGACAATGTGACTGACAGTTTATGGAACATGGATGGGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009267 GO:0009605 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010371 GO:0010373 GO:0010468 GO:0010476 GO:0010556 GO:0010558 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0014070 GO:0016036 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0045892 GO:0045934 GO:0046394 GO:0046677 GO:0046885 GO:0046890 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060255 GO:0061458 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

299

Amino Acids

33.11

Weight (kDa)

5.83

Isoelectric Point (pI)

64.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 15 - 62 8.9e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 18 - 75 2.5e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 68 - 111 4.3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 72 - 125 2.8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 282
AccB1I GGYRCC 1 cut(s) 412
AccII CGCG 2 cut(s) 204, 352
AciI CCGC 4 cut(s) 204, 218, 486, 632
AclWI GGATC 1 cut(s) 229
AcsI RAATTY 2 cut(s) 115, 592
AcvI CACGTG 1 cut(s) 652
AdeI CACNNNGTG 1 cut(s) 742
AfiI CCNNNNNNNGG 3 cut(s) 631, 790, 835
AflII CTTAAG 1 cut(s) 718
AflIII ACRYGT 2 cut(s) 564, 649
AgsI TTSAA 3 cut(s) 142, 242, 462
AjiI CACGTC 1 cut(s) 763
AjnI CCWGG 1 cut(s) 777
AleI CACNNNNGTG 1 cut(s) 585
AluBI AGCT 5 cut(s) 159, 229, 518, 717, 756
AluI AGCT 5 cut(s) 159, 229, 518, 717, 756
Alw21I GWGCWC 1 cut(s) 473
Alw26I GTCTC 1 cut(s) 776
AlwI GGATC 1 cut(s) 229
AoxI GGCC 3 cut(s) 47, 106, 890
ApeKI GCWGC 6 cut(s) 5, 159, 283, 424, 515, 714
ApoI RAATTY 2 cut(s) 115, 592
AscI GGCGCGCC 1 cut(s) 350
AspLEI GCGC 4 cut(s) 204, 283, 352, 354
AspS9I GGNCC 4 cut(s) 47, 147, 781, 890
AsuC2I CCSGG 1 cut(s) 294
AsuHPI GGTGA 1 cut(s) 495
AvaII GGWCC 2 cut(s) 147, 781
BanI GGYRCC 1 cut(s) 412
BauI CACGAG 1 cut(s) 676
BbrPI CACGTG 1 cut(s) 652
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 473
BbvI GCAGC 5 cut(s) 146, 295, 411, 527, 726
BccI CCATC 4 cut(s) 165, 722, 826, 881
BceAI ACGGC 2 cut(s) 115, 877
BcgI CGANNNNNNTGC 2 cut(s) 406, 440
BciT130I CCWGG 1 cut(s) 779
BcnI CCSGG 1 cut(s) 294
BcoDI GTCTC 1 cut(s) 776
BfaI CTAG 1 cut(s) 549
BfmI CTRYAG 3 cut(s) 120, 160, 709
BfrI CTTAAG 1 cut(s) 718
BisI GCNGC 6 cut(s) 6, 160, 284, 425, 516, 715
BlsI GCNGC 6 cut(s) 7, 161, 285, 426, 517, 716
Bme1390I CCNGG 2 cut(s) 294, 779
Bme18I GGWCC 2 cut(s) 147, 781
BmgBI CACGTC 1 cut(s) 763
BmgT120I GGNCC 4 cut(s) 47, 147, 781, 890
BmiI GGNNCC 3 cut(s) 209, 414, 783
BmrFI CCNGG 2 cut(s) 294, 779
BmsI GCATC 2 cut(s) 382, 497
BpiI GAAGAC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 460, 492
BpuEI CTTGAG 2 cut(s) 80, 487
BpuMI CCSGG 1 cut(s) 294
BsaAI YACGTR 2 cut(s) 652, 742
BsaI GGTCTC 1 cut(s) 776
BsaJI CCNNGG 2 cut(s) 50, 97
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 3 cut(s) 631, 790, 835
Bse3DI GCAATG 2 cut(s) 559, 801
BseBI CCWGG 1 cut(s) 779
BseDI CCNNGG 2 cut(s) 50, 97
BseGI GGATG 2 cut(s) 855, 892
BseLI CCNNNNNNNGG 3 cut(s) 631, 790, 835
BseMI GCAATG 2 cut(s) 559, 801
BseMII CTCAG 2 cut(s) 491, 787
BsePI GCGCGC 1 cut(s) 350
BseXI GCAGC 5 cut(s) 146, 295, 411, 527, 726
Bsh1236I CGCG 2 cut(s) 204, 352
BshFI GGCC 3 cut(s) 49, 108, 892
BshNI GGYRCC 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 473
BsiSI CCGG 2 cut(s) 150, 293
BslFI GGGAC 1 cut(s) 596
BslI CCNNNNNNNGG 3 cut(s) 631, 790, 835
BsmAI GTCTC 1 cut(s) 776
BsmFI GGGAC 1 cut(s) 596
BsnI GGCC 3 cut(s) 49, 108, 892
Bso31I GGTCTC 1 cut(s) 776
Bsp1286I GDGCHC 1 cut(s) 473
Bsp143I GATC 1 cut(s) 234
Bsp19I CCATGG 1 cut(s) 50
BspACI CCGC 4 cut(s) 204, 218, 486, 632
BspANI GGCC 3 cut(s) 49, 108, 892
BspCNI CTCAG 2 cut(s) 490, 786
BspFNI CGCG 2 cut(s) 204, 352
BspHI TCATGA 1 cut(s) 231
BspLI GGNNCC 3 cut(s) 209, 414, 783
BspMAI CTGCAG 1 cut(s) 164
BspPI GGATC 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 412
BspTI CTTAAG 1 cut(s) 718
BspTNI GGTCTC 1 cut(s) 776
BsrDI GCAATG 2 cut(s) 559, 801
BssECI CCNNGG 2 cut(s) 50, 97
BssHII GCGCGC 1 cut(s) 350
BssMI GATC 1 cut(s) 234
BssSI CACGAG 1 cut(s) 676
BssT1I CCWWGG 1 cut(s) 50
Bst2BI CACGAG 1 cut(s) 676
Bst2UI CCWGG 1 cut(s) 779
Bst4CI ACNGT 4 cut(s) 610, 672, 819, 872
Bst6I CTCTTC 2 cut(s) 37, 137
BstAFI CTTAAG 1 cut(s) 718
BstAPI GCANNNNNTGC 2 cut(s) 131, 289
BstBAI YACGTR 2 cut(s) 652, 742
BstC8I GCNNGC 2 cut(s) 352, 380
BstDEI CTNAG 2 cut(s) 477, 773
BstDSI CCRYGG 2 cut(s) 50, 97
BstF5I GGATG 2 cut(s) 855, 892
BstFNI CGCG 2 cut(s) 204, 352
BstHHI GCGC 4 cut(s) 204, 283, 352, 354
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 1 cut(s) 776
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 6 cut(s) 131, 226, 289, 421, 714, 807
BstNI CCWGG 1 cut(s) 779
BstSCI CCNGG 2 cut(s) 292, 777
BstSFI CTRYAG 3 cut(s) 120, 160, 709
BstUI CGCG 2 cut(s) 204, 352
BstV1I GCAGC 5 cut(s) 146, 295, 411, 527, 726
BstV2I GAAGAC 1 cut(s) 72
BsuRI GGCC 3 cut(s) 49, 108, 892
BtgI CCRYGG 2 cut(s) 50, 97
BtrI CACGTC 1 cut(s) 763
BtsCI GGATG 2 cut(s) 855, 892
Cac8I GCNNGC 2 cut(s) 352, 380
CciI TCATGA 1 cut(s) 231
CfoI GCGC 4 cut(s) 204, 283, 352, 354
Cfr13I GGNCC 4 cut(s) 47, 147, 781, 890
CviAII CATG 3 cut(s) 51, 232, 883
DdeI CTNAG 2 cut(s) 477, 773
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
DraIII CACNNNGTG 1 cut(s) 742
Eam1104I CTCTTC 2 cut(s) 37, 137
EarI CTCTTC 2 cut(s) 37, 137
EciI GGCGGA 1 cut(s) 647
Eco130I CCWWGG 1 cut(s) 50
Eco31I GGTCTC 1 cut(s) 776
Eco47I GGWCC 2 cut(s) 147, 781
Eco72I CACGTG 1 cut(s) 652
EcoRI GAATTC 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 777
EcoT14I CCWWGG 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 3 cut(s) 54, 235, 886
FaiI YATR 7 cut(s) 52, 80, 233, 694, 759, 877, 884
FaqI GGGAC 1 cut(s) 596
FatI CATG 3 cut(s) 50, 231, 882
FauI CCCGC 1 cut(s) 197
Fnu4HI GCNGC 6 cut(s) 6, 160, 284, 425, 516, 715
FokI GGATG 1 cut(s) 862
Fsp4HI GCNGC 6 cut(s) 6, 160, 284, 425, 516, 715
FspBI CTAG 1 cut(s) 549
FspI TGCGCA 1 cut(s) 282
GlaI GCGC 4 cut(s) 203, 282, 351, 353
GluI GCNGC 6 cut(s) 6, 160, 284, 425, 516, 715
HaeIII GGCC 3 cut(s) 49, 108, 892
HapII CCGG 2 cut(s) 150, 293
HhaI GCGC 4 cut(s) 204, 283, 352, 354
Hin1II CATG 3 cut(s) 54, 235, 886
Hin6I GCGC 4 cut(s) 202, 281, 350, 352
HinP1I GCGC 4 cut(s) 202, 281, 350, 352
HinfI GANTC 4 cut(s) 55, 368, 418, 635
HpaII CCGG 2 cut(s) 150, 293
HphI GGTGA 1 cut(s) 495
Hpy166II GTNNAC 3 cut(s) 94, 675, 745
Hpy188I TCNGA 2 cut(s) 41, 480
Hpy188III TCNNGA 5 cut(s) 59, 91, 232, 389, 725
Hpy8I GTNNAC 3 cut(s) 94, 675, 745
HpyAV CCTTC 2 cut(s) 98, 531
HpyCH4III ACNGT 4 cut(s) 610, 672, 819, 872
HpyCH4IV ACGT 4 cut(s) 564, 651, 741, 762
HpyCH4V TGCA 6 cut(s) 134, 162, 340, 395, 427, 692
HpyF10VI GCNNNNNNNGC 6 cut(s) 131, 226, 289, 421, 714, 807
HpyF3I CTNAG 2 cut(s) 477, 773
HpySE526I ACGT 4 cut(s) 564, 651, 741, 762
Hsp92II CATG 3 cut(s) 54, 235, 886
HspAI GCGC 4 cut(s) 202, 281, 350, 352
Kzo9I GATC 1 cut(s) 234
LmnI GCTCC 3 cut(s) 13, 436, 523
Lsp1109I GCAGC 5 cut(s) 146, 295, 411, 527, 726
LweI GCATC 2 cut(s) 382, 497
MaeI CTAG 1 cut(s) 549
MaeII ACGT 4 cut(s) 564, 651, 741, 762
MaeIII GTNAC 4 cut(s) 260, 501, 734, 862
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 9 cut(s) 38, 54, 77, 154, 309, 435, 438, 441, 450
MhlI GDGCHC 1 cut(s) 473
MluCI AATT 7 cut(s) 115, 178, 276, 383, 574, 592, 811
MlyI GAGTC 3 cut(s) 49, 377, 412
MmeI TCCRAC 2 cut(s) 549, 834
MnlI CCTC 6 cut(s) 38, 55, 138, 550, 666, 760
MseI TTAA 3 cut(s) 185, 198, 719
MslI CAYNNNNRTG 1 cut(s) 585
MspCI CTTAAG 1 cut(s) 718
MspI CCGG 2 cut(s) 150, 293
MspR9I CCNGG 2 cut(s) 294, 779
MvaI CCWGG 1 cut(s) 779
MvnI CGCG 2 cut(s) 204, 352
MwoI GCNNNNNNNGC 6 cut(s) 131, 226, 289, 421, 714, 807
NciI CCSGG 1 cut(s) 294
NcoI CCATGG 1 cut(s) 50
NdeII GATC 1 cut(s) 234
NlaIII CATG 3 cut(s) 54, 235, 886
NlaIV GGNNCC 3 cut(s) 209, 414, 783
NmuCI GTSAC 3 cut(s) 501, 734, 862
NsbI TGCGCA 1 cut(s) 282
OliI CACNNNNGTG 1 cut(s) 585
PagI TCATGA 1 cut(s) 231
PalAI GGCGCGCC 1 cut(s) 350
PauI GCGCGC 1 cut(s) 350
PfeI GAWTC 1 cut(s) 635
PkrI GCNGC 6 cut(s) 7, 161, 285, 426, 517, 716
PleI GAGTC 3 cut(s) 49, 376, 412
PmaCI CACGTG 1 cut(s) 652
PmlI CACGTG 1 cut(s) 652
PpsI GAGTC 3 cut(s) 49, 376, 412
Ppu21I YACGTR 2 cut(s) 652, 742
Psp6I CCWGG 1 cut(s) 777
PspCI CACGTG 1 cut(s) 652
PspGI CCWGG 1 cut(s) 777
PspN4I GGNNCC 3 cut(s) 209, 414, 783
PspPI GGNCC 4 cut(s) 47, 147, 781, 890
PstI CTGCAG 1 cut(s) 164
PteI GCGCGC 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 585
SaqAI TTAA 3 cut(s) 185, 198, 719
SatI GCNGC 6 cut(s) 6, 160, 284, 425, 516, 715
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 4 cut(s) 47, 147, 781, 890
SchI GAGTC 3 cut(s) 49, 377, 412
ScrFI CCNGG 2 cut(s) 294, 779
SduI GDGCHC 1 cut(s) 473
SfaNI GCATC 2 cut(s) 382, 497
SfcI CTRYAG 3 cut(s) 120, 160, 709
SgsI GGCGCGCC 1 cut(s) 350
SinI GGWCC 2 cut(s) 147, 781
SmiMI CAYNNNNRTG 1 cut(s) 585
SmlI CTYRAG 3 cut(s) 59, 466, 718
SmoI CTYRAG 3 cut(s) 59, 466, 718
Sse9I AATT 7 cut(s) 115, 178, 276, 383, 574, 592, 811
SsiI CCGC 4 cut(s) 204, 218, 486, 632
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 2 cut(s) 292, 777
StyI CCWWGG 1 cut(s) 50
TaaI ACNGT 4 cut(s) 610, 672, 819, 872
TaiI ACGT 4 cut(s) 567, 654, 744, 765
TaqI TCGA 3 cut(s) 366, 371, 390
TasI AATT 7 cut(s) 115, 178, 276, 383, 574, 592, 811
TfiI GAWTC 1 cut(s) 635
Tru1I TTAA 3 cut(s) 185, 198, 719
Tru9I TTAA 3 cut(s) 185, 198, 719
TseFI GTSAC 3 cut(s) 501, 734, 862
TseI GCWGC 6 cut(s) 5, 159, 283, 424, 515, 714
Tsp45I GTSAC 3 cut(s) 501, 734, 862
TspDTI ATGAA 1 cut(s) 39
TspGWI ACGGA 1 cut(s) 514
Vha464I CTTAAG 1 cut(s) 718
VpaK11BI GGWCC 2 cut(s) 147, 781
XapI RAATTY 2 cut(s) 115, 592
XspI CTAG 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.