Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007738

Physical Location & Seq

Genomic Coordinates Forward (+)

26086881 .. 26089034

Gene Structure 2154 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAGCGGAGATAGACTTGAATTTGAAAACCCTATAGAGGATGCGGTTTCGAGGCTCAGATTCTCCCCTCAATCAAACAATCTCCTCGTTGCTTCTTGGGATTCTTATCTGAGATTGTATGATGTGGAGAGCTCTTCGCTAAGTCTTGAATTAAACTCTCAAGCTGCTCTTCTTGATTGTTGTTTCGAGAATGAATCAACTTCATTTACCTCTGGTTCTGATGGATTCATCCGAAGGTATGATTTAAACGCTGGAACAGTTGATACAATTGGAAGGCATGATGACATTTCAACATCCATTGTCTACTCTTATGAAAAAGGTGAAGTTATCTCGACTGGGTTTGATGAGAAGATCAAATTCTGGGATACAAGACAAAGAGAAAGTCTTGTGTTTTCGACTGATGCTGGTGGAGCAGTGGGATGTGTCACTGTATCTGGAAACAACTTAGTTGTTTGTGTGGACGCATCGATGCATATATACGATTTACGTAACTTAGATGAAGCTTTTCAATCGTATGCATCCCAAGTGGAGGTGCCAATCAGATGTATCACCTCTGTACCTTATTCCAGAGGATATGCAGTTGGGTCAGTAGACGGACGAGTAGCTGTGGATTTCCCCAATACATCATGCTCCAGTGAGATTAAATACAGTTTCCGATGCCATCCCAAGAGTAGGAATGGAAGACTTGATGGTGTATGCATAAATGCAATCGAATTCAGTCCATGTGGGTCAGGGACTTTTGTAACAGGTGACAATGAAGGATACGTGATCTCATGGAATGCTAAAAGCAGAAGAAGACTCAATGAGTTGCCAAGGTACTCAAATAGCATCGCGTCTTTAGCATTTGACCACACTGGAGAACTCTTGGCCATTGCATCAAGCCACACTTACCAAGATGCTAAAGAGAAGGAAGAAGCTCCTCAAGTGTTCATACACAGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000151 GO:0000278 GO:0000775 GO:0000776 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009524 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0022402 GO:0030071 GO:0031461 GO:0031577 GO:0032182 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033597 GO:0043130 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0080008 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1902494 GO:1903047 GO:1905818 GO:1905819 GO:1990234 GO:1990298 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko05166 map04110 map04111 map05166

Pfam Domains

Protein Families

WD40

Protein Analysis

314

Amino Acids

34.76

Weight (kDa)

4.89

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WDR55	PF24796	12 - 202	5.4e-10	WDR55
Beta-prop_WDR3_2nd	PF25172	12 - 151	4e-07	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	13 - 202	1.9e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	13 - 161	4.5e-11	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	14 - 201	1.5e-09	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	14 - 184	5e-16	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	30 - 191	4.9e-06	G protein beta WD-40 repeat protein
WD40_Prp19	PF24814	58 - 295	1.4e-12	Prp19 WD40 domain
WD40_CDC20-Fz	PF24807	92 - 299	2.2e-09	CDC20/Fizzy WD40 domain
WD40_WDHD1_1st	PF24817	93 - 203	4.7e-07	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	110 - 296	3e-09	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69400 AT1G69400
fragaria_vesca	FvH4_4g30600 FvH4_4g30600 FvH4_4g30600
malus_domestica	MD13G1067000.v1.1 MD13G1067200.v1.1 MD16G1066300.v1.1
prunus_persica	Prupe.1G281000_v2.0.a1 Prupe.1G281000_v2.0.a1 Prupe.1G281000_v2.0.a1
pyrus_communis	pycom16g05770
rosa_chinensis	RchiOBHm_Chr4g0439001
rosa_laevigata	RLG00000006312
rosa_multiflora	Rmu_sc0005887.1_g000008 Rmu_sc0023005.1_g000006
rosa_roxburghii	Rroxscaffold_5G00379990
rosa_rugosa	Rorug04G0315000.1
rosa_samantha	Rh4AG365600 Rh4BG376800 Rh4CG390900 Rh4DG371500
rosa_wichuraiana	Rw0G007390 Rw0G016940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	532
AccBSI	CCGCTC	1 cut(s)	6
AccI	GTMKAC	2 cut(s)	303, 591
AccII	CGCG	1 cut(s)	833
AciI	CCGC	2 cut(s)	6, 44
AcoI	YGGCCR	1 cut(s)	867
AcsI	RAATTY	3 cut(s)	20, 356, 713
AfaI	GTAC	2 cut(s)	558, 818
AfiI	CCNNNNNNNGG	3 cut(s)	37, 529, 672
AgsI	TTSAA	5 cut(s)	20, 26, 149, 291, 509
AluBI	AGCT	5 cut(s)	132, 164, 503, 605, 917
AluI	AGCT	5 cut(s)	132, 164, 503, 605, 917
Alw21I	GWGCWC	1 cut(s)	134
AoxI	GGCC	1 cut(s)	867
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	3 cut(s)	20, 356, 713
ArsI	GACNNNNNNTTYG	2 cut(s)	367, 399
Asp700I	GAANNNNTTC	1 cut(s)	504
AsuHPI	GGTGA	3 cut(s)	332, 541, 761
BaeI	ACNNNNGTAYC	2 cut(s)	540, 573
BalI	TGGCCA	1 cut(s)	869
BanI	GGYRCC	1 cut(s)	532
BanII	GRGCYC	1 cut(s)	134
BbsI	GAAGAC	2 cut(s)	688, 802
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	3 cut(s)	215, 669, 683
BciVI	GTATCC	2 cut(s)	358, 755
BfmI	CTRYAG	1 cut(s)	33
BfuI	GTATCC	2 cut(s)	358, 755
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	534
BmrI	ACTGGG	1 cut(s)	345
BmsI	GCATC	9 cut(s)	31, 391, 459, 473, 527, 647, 837, 884, 886
BmuI	ACTGGG	1 cut(s)	345
BpiI	GAAGAC	2 cut(s)	688, 802
BpmI	CTGGAG	2 cut(s)	616, 876
BpuEI	CTTGAG	2 cut(s)	144, 906
Bsa29I	ATCGAT	1 cut(s)	467
BsaAI	YACGTR	2 cut(s)	488, 766
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	812
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 529, 672
Bse1I	ACTGG	3 cut(s)	340, 633, 859
Bse3DI	GCAATG	1 cut(s)	870
Bse8I	GATNNNNATC	1 cut(s)	105
BseCI	ATCGAT	1 cut(s)	467
BseDI	CCNNGG	1 cut(s)	812
BseGI	GGATG	6 cut(s)	46, 228, 293, 425, 518, 661
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	3 cut(s)	37, 529, 672
BseMI	GCAATG	1 cut(s)	870
BseMII	CTCAG	2 cut(s)	70, 101
BseNI	ACTGG	3 cut(s)	340, 633, 859
BseRI	GAGGAG	2 cut(s)	74, 909
BseXI	GCAGC	1 cut(s)	151
Bsh1236I	CGCG	1 cut(s)	833
BshFI	GGCC	1 cut(s)	869
BshNI	GGYRCC	1 cut(s)	532
BshVI	ATCGAT	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	748
BslI	CCNNNNNNNGG	3 cut(s)	37, 529, 672
BsmFI	GGGAC	1 cut(s)	748
BsmI	GAATGC	1 cut(s)	784
BsnI	GGCC	1 cut(s)	869
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	351, 768
BspACI	CCGC	2 cut(s)	6, 44
BspANI	GGCC	1 cut(s)	869
BspCNI	CTCAG	2 cut(s)	69, 102
BspDI	ATCGAT	1 cut(s)	467
BspFNI	CGCG	1 cut(s)	833
BspLI	GGNNCC	1 cut(s)	534
BspQI	GCTCTTC	2 cut(s)	139, 174
BspT107I	GGYRCC	1 cut(s)	532
BsrBI	CCGCTC	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	870
BsrI	ACTGG	3 cut(s)	340, 633, 859
BssECI	CCNNGG	1 cut(s)	812
BssMI	GATC	2 cut(s)	351, 768
BssT1I	CCWWGG	1 cut(s)	812
Bst4CI	ACNGT	3 cut(s)	259, 430, 650
Bst6I	CTCTTC	2 cut(s)	139, 174
BstBAI	YACGTR	2 cut(s)	488, 766
BstDEI	CTNAG	5 cut(s)	56, 110, 140, 445, 493
BstF5I	GGATG	6 cut(s)	46, 228, 293, 425, 518, 661
BstFNI	CGCG	1 cut(s)	833
BstKTI	GATC	2 cut(s)	354, 771
BstMBI	GATC	2 cut(s)	351, 768
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 839
BstSFI	CTRYAG	1 cut(s)	33
BstSNI	TACGTA	1 cut(s)	488
BstUI	CGCG	1 cut(s)	833
BstV1I	GCAGC	1 cut(s)	151
BstV2I	GAAGAC	2 cut(s)	688, 802
Bsu15I	ATCGAT	1 cut(s)	467
BsuI	GTATCC	2 cut(s)	358, 755
BsuRI	GGCC	1 cut(s)	869
BsuTUI	ATCGAT	1 cut(s)	467
BtgZI	GCGATG	1 cut(s)	814
BtsCI	GGATG	6 cut(s)	46, 228, 293, 425, 518, 661
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	4 cut(s)	420, 426, 640, 852
ClaI	ATCGAT	1 cut(s)	467
CseI	GACGC	2 cut(s)	470, 822
Csp6I	GTAC	2 cut(s)	557, 817
CviAII	CATG	4 cut(s)	278, 627, 723, 774
CviJI	RGCY	9 cut(s)	55, 132, 164, 503, 605, 869, 882, 917, 940
CviKI_1	RGCY	9 cut(s)	55, 132, 164, 503, 605, 869, 882, 917, 940
CviQI	GTAC	2 cut(s)	557, 817
DdeI	CTNAG	5 cut(s)	56, 110, 140, 445, 493
DpnI	GATC	2 cut(s)	353, 770
DpnII	GATC	2 cut(s)	351, 768
DraI	TTTAAA	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	867
Eam1104I	CTCTTC	2 cut(s)	139, 174
EarI	CTCTTC	2 cut(s)	139, 174
Ecl136II	GAGCTC	1 cut(s)	132
Eco105I	TACGTA	1 cut(s)	488
Eco130I	CCWWGG	1 cut(s)	812
Eco24I	GRGCYC	1 cut(s)	134
Eco53kI	GAGCTC	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	132
EcoRI	GAATTC	1 cut(s)	713
EcoT14I	CCWWGG	1 cut(s)	812
EcoT22I	ATGCAT	3 cut(s)	474, 520, 701
EcoT38I	GRGCYC	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	812
FaeI	CATG	4 cut(s)	281, 630, 726, 777
FalI	AAGNNNNNCTT	4 cut(s)	153, 185, 871, 903
FaqI	GGGAC	1 cut(s)	748
FatI	CATG	4 cut(s)	277, 626, 722, 773
FblI	GTMKAC	2 cut(s)	303, 591
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	6 cut(s)	53, 215, 280, 432, 505, 648
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	165
GluI	GCNGC	1 cut(s)	165
GsuI	CTGGAG	2 cut(s)	616, 876
HaeIII	GGCC	1 cut(s)	869
HgaI	GACGC	2 cut(s)	470, 822
Hin1II	CATG	4 cut(s)	281, 630, 726, 777
HindIII	AAGCTT	1 cut(s)	501
HinfI	GANTC	5 cut(s)	60, 101, 194, 225, 798
HphI	GGTGA	3 cut(s)	332, 541, 761
Hpy166II	GTNNAC	3 cut(s)	304, 460, 592
Hpy188I	TCNGA	6 cut(s)	59, 111, 220, 233, 542, 656
Hpy188III	TCNNGA	6 cut(s)	146, 173, 187, 331, 435, 567
Hpy8I	GTNNAC	3 cut(s)	304, 460, 592
HpyAV	CCTTC	4 cut(s)	228, 267, 752, 901
HpyCH4III	ACNGT	3 cut(s)	259, 430, 650
HpyCH4IV	ACGT	2 cut(s)	487, 765
HpyCH4V	TGCA	6 cut(s)	472, 518, 578, 699, 707, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 839
HpyF3I	CTNAG	5 cut(s)	56, 110, 140, 445, 493
HpySE526I	ACGT	2 cut(s)	487, 765
Hsp92II	CATG	4 cut(s)	281, 630, 726, 777
Kzo9I	GATC	2 cut(s)	351, 768
LguI	GCTCTTC	2 cut(s)	139, 174
LmnI	GCTCC	3 cut(s)	410, 635, 922
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	9 cut(s)	31, 391, 459, 473, 527, 647, 837, 884, 886
MaeII	ACGT	2 cut(s)	487, 765
MaeIII	GTNAC	4 cut(s)	424, 488, 742, 749
MalI	GATC	2 cut(s)	353, 770
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	2 cut(s)	351, 768
MboII	GAAGA	7 cut(s)	126, 161, 361, 693, 804, 807, 923
MfeI	CAATTG	1 cut(s)	267
MhlI	GDGCHC	1 cut(s)	134
MlsI	TGGCCA	1 cut(s)	869
MluCI	AATT	5 cut(s)	20, 149, 267, 356, 713
MluNI	TGGCCA	1 cut(s)	869
MlyI	GAGTC	1 cut(s)	792
MnlI	CCTC	9 cut(s)	31, 45, 78, 95, 220, 523, 562, 563, 930
Mox20I	TGGCCA	1 cut(s)	869
Mph1103I	ATGCAT	3 cut(s)	474, 520, 701
MroXI	GAANNNNTTC	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	869
MseI	TTAA	3 cut(s)	152, 245, 642
Msp20I	TGGCCA	1 cut(s)	869
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	784
MvnI	CGCG	1 cut(s)	833
MwoI	GCNNNNNNNGC	2 cut(s)	410, 839
NdeII	GATC	2 cut(s)	351, 768
NlaIII	CATG	4 cut(s)	281, 630, 726, 777
NlaIV	GGNNCC	1 cut(s)	534
NmuCI	GTSAC	2 cut(s)	424, 749
NsiI	ATGCAT	3 cut(s)	474, 520, 701
PciSI	GCTCTTC	2 cut(s)	139, 174
PctI	GAATGC	1 cut(s)	784
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	4 cut(s)	60, 101, 194, 225
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	792
PpsI	GAGTC	1 cut(s)	792
Ppu21I	YACGTR	2 cut(s)	488, 766
Psp124BI	GAGCTC	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	534
PsrI	GAACNNNNNNTAC	2 cut(s)	247, 279
RsaI	GTAC	2 cut(s)	558, 818
RsaNI	GTAC	2 cut(s)	557, 817
SacI	GAGCTC	1 cut(s)	134
SapI	GCTCTTC	2 cut(s)	139, 174
SaqAI	TTAA	3 cut(s)	152, 245, 642
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	2 cut(s)	351, 768
SchI	GAGTC	1 cut(s)	792
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	9 cut(s)	31, 391, 459, 473, 527, 647, 837, 884, 886
SfcI	CTRYAG	1 cut(s)	33
SmlI	CTYRAG	2 cut(s)	159, 921
SmoI	CTYRAG	2 cut(s)	159, 921
SnaBI	TACGTA	1 cut(s)	488
Sse9I	AATT	5 cut(s)	20, 149, 267, 356, 713
SsiI	CCGC	2 cut(s)	6, 44
SstI	GAGCTC	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	812
TaaI	ACNGT	3 cut(s)	259, 430, 650
TaiI	ACGT	2 cut(s)	490, 768
TaqI	TCGA	6 cut(s)	50, 186, 332, 395, 467, 711
TasI	AATT	5 cut(s)	20, 149, 267, 356, 713
TfiI	GAWTC	4 cut(s)	60, 101, 194, 225
Tru1I	TTAA	3 cut(s)	152, 245, 642
Tru9I	TTAA	3 cut(s)	152, 245, 642
TscAI	CASTG	4 cut(s)	420, 433, 640, 859
TseFI	GTSAC	2 cut(s)	424, 749
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	2 cut(s)	424, 749
TspDTI	ATGAA	7 cut(s)	192, 207, 217, 327, 513, 771, 919
TspGWI	ACGGA	1 cut(s)	609
TspRI	CASTG	4 cut(s)	420, 433, 640, 859
XapI	RAATTY	3 cut(s)	20, 356, 713
XmiI	GTMKAC	2 cut(s)	303, 591
XmnI	GAANNNNTTC	1 cut(s)	504
Zsp2I	ATGCAT	3 cut(s)	474, 520, 701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.