Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005887.1

Orthogroup ID

OG0007738

Physical Location & Seq

Genomic Coordinates Forward (+)

32092 .. 34788

Gene Structure 2697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005887.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atgagcggagcccctttgaaattcgaaaccccaatccaagatgcaatttccagaatccgattcgctccaacctcacacaaccttctcatcgcttcttgggactccaaactgcgactgtacgacgtgggaagctcggtgctcagattcgaagctccggccgaagctgcactactcgattgttgcttccagaacgagtcggttgcgtttagcgccggctccgatggcttcattagaaggtatgacttgcattctggaatctgtgagatgattggaaatcatgatgacatagcaacctgcattggatattctgatgaaacaagccaagtacttaccgctggtttggacaagaagatatttgcctgggacgcacgtatggaggagggtaaaaaatctgtgtttgtaaaaagtcttgactcagaggtgacgtccttgtcactctcgggtctcgagatgatggtaaccatgggagcgttaatatatgtgtgtgatttgcgcaacctccaaaaaccatatgaatcaaaagtttcagatttgaacacaacgattatatgtggaagtgcgattcctaatgctaaaggatttgcggttggctcagcagatggacgagtgtcattggagatttgccatccatctaattcagataacatcagatatatgttccggtgtcatccgaagtcaactgatagaagatatcatctagcagcggtgaatgaaattgtgttcaatcctctcatttatggtgcccttcttactggtgatgatgagggtcatgttattgcatggaatgctcaaagcagaaagaggctatttcagttgcctaggtacccaaatagtgtggcatccttagcgtatcaccaccagggacaacttctggccgttgcatcaagctacacatatcggcaagctattgaatcagaagagctccctcagatatttatacatgaaattggcgatgctaacatgagatcagctgacataggaagttcgagctgcaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko05166 map04110 map04111 map05166

Pfam Domains

Protein Families

eIF-5a

Protein Analysis

332

Amino Acids

36.56

Weight (kDa)

5.58

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69400 AT1G69400
fragaria_vesca	FvH4_4g30600 FvH4_4g30600 FvH4_4g30600
malus_domestica	MD13G1067000.v1.1 MD13G1067200.v1.1 MD16G1066300.v1.1
prunus_persica	Prupe.1G281000_v2.0.a1 Prupe.1G281000_v2.0.a1 Prupe.1G281000_v2.0.a1
pyrus_communis	pycom16g05770
rosa_chinensis	RchiOBHm_Chr4g0439001
rosa_laevigata	RLG00000006312
rosa_multiflora	Rmu_sc0005887.1_g000008 Rmu_sc0023005.1_g000006
rosa_roxburghii	Rroxscaffold_5G00379990
rosa_rugosa	Rorug04G0315000.1
rosa_samantha	Rh4AG365600 Rh4BG376800 Rh4CG390900 Rh4DG371500
rosa_wichuraiana	Rw0G007390 Rw0G016940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	430
AatII	GACGTC	1 cut(s)	428
Acc16I	TGCGCA	1 cut(s)	494
Acc36I	ACCTGC	1 cut(s)	302
Acc65I	GGTACC	1 cut(s)	822
AccB1I	GGYRCC	2 cut(s)	740, 822
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	4 cut(s)	6, 333, 584, 704
AcoI	YGGCCR	2 cut(s)	156, 873
AcsI	RAATTY	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	425
AfaI	GTAC	3 cut(s)	119, 327, 824
AgsI	TTSAA	4 cut(s)	19, 535, 724, 911
AjiI	CACGTC	1 cut(s)	124
AjnI	CCWGG	2 cut(s)	359, 858
AluBI	AGCT	8 cut(s)	132, 152, 164, 888, 905, 922, 971, 990
AluI	AGCT	8 cut(s)	132, 152, 164, 888, 905, 922, 971, 990
Alw21I	GWGCWC	2 cut(s)	141, 924
Alw26I	GTCTC	1 cut(s)	449
Ama87I	CYCGRG	2 cut(s)	439, 446
AoxI	GGCC	2 cut(s)	156, 873
ApeKI	GCWGC	3 cut(s)	164, 701, 990
ApoI	RAATTY	1 cut(s)	20
Asp718I	GGTACC	1 cut(s)	822
AspA2I	CCTAGG	1 cut(s)	818
AspLEI	GCGC	2 cut(s)	212, 495
AsuHPI	GGTGA	4 cut(s)	433, 718, 767, 845
AsuII	TTCGAA	2 cut(s)	24, 147
AvaI	CYCGRG	2 cut(s)	439, 446
AvrII	CCTAGG	1 cut(s)	818
BaeGI	GKGCMC	1 cut(s)	745
BanI	GGYRCC	2 cut(s)	740, 822
BanII	GRGCYC	2 cut(s)	13, 924
BarI	GAAGNNNNNNTAC	2 cut(s)	153, 185
Bbv12I	GWGCWC	2 cut(s)	141, 924
BbvI	GCAGC	3 cut(s)	151, 713, 977
BccI	CCATC	5 cut(s)	215, 448, 593, 633, 637
BceAI	ACGGC	1 cut(s)	860
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BciT130I	CCWGG	2 cut(s)	361, 860
BcoDI	GTCTC	1 cut(s)	449
BfaI	CTAG	2 cut(s)	698, 819
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	3 cut(s)	165, 702, 991
BlnI	CCTAGG	1 cut(s)	818
BlpI	GCTNAGC	1 cut(s)	592
BlsI	GCNGC	3 cut(s)	166, 703, 992
BmcAI	AGTACT	1 cut(s)	327
Bme1390I	CCNGG	2 cut(s)	361, 860
BmeT110I	CYCGRG	2 cut(s)	439, 446
BmgBI	CACGTC	1 cut(s)	124
BmiI	GGNNCC	4 cut(s)	10, 217, 742, 824
BmrFI	CCNGG	2 cut(s)	361, 860
BmsI	GCATC	4 cut(s)	31, 848, 890, 943
BoxI	GACNNNNGTC	1 cut(s)	607
Bpu10I	CCTNAGC	1 cut(s)	844
Bpu1102I	GCTNAGC	1 cut(s)	592
Bpu14I	TTCGAA	2 cut(s)	24, 147
BsaAI	YACGTR	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	425
BsaI	GGTCTC	1 cut(s)	449
BsaJI	CCNNGG	4 cut(s)	360, 462, 818, 859
BsaWI	WCCGGW	1 cut(s)	660
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	757
BseBI	CCWGG	2 cut(s)	361, 860
BseDI	CCNNGG	4 cut(s)	360, 462, 818, 859
BseGI	GGATG	3 cut(s)	625, 667, 839
BseMII	CTCAG	4 cut(s)	154, 429, 606, 941
BseNI	ACTGG	1 cut(s)	757
BseRI	GAGGAG	1 cut(s)	392
BseSI	GKGCMC	1 cut(s)	745
BseX3I	CGGCCG	1 cut(s)	156
BseXI	GCAGC	3 cut(s)	151, 713, 977
BsgI	GTGCAG	1 cut(s)	150
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	2 cut(s)	158, 875
BshNI	GGYRCC	2 cut(s)	740, 822
BsiEI	CGRYCG	1 cut(s)	159
BsiHKAI	GWGCWC	2 cut(s)	141, 924
BsiHKCI	CYCGRG	2 cut(s)	439, 446
BsiSI	CCGG	3 cut(s)	155, 213, 661
BslFI	GGGAC	3 cut(s)	113, 377, 876
BsmAI	GTCTC	1 cut(s)	449
BsmFI	GGGAC	3 cut(s)	113, 377, 876
BsmI	GAATGC	2 cut(s)	247, 790
BsnI	GGCC	2 cut(s)	158, 875
Bso31I	GGTCTC	1 cut(s)	449
BsoBI	CYCGRG	2 cut(s)	439, 446
Bsp119I	TTCGAA	2 cut(s)	24, 147
Bsp1286I	GDGCHC	4 cut(s)	13, 141, 745, 924
Bsp143I	GATC	1 cut(s)	965
Bsp1720I	GCTNAGC	1 cut(s)	592
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	4 cut(s)	6, 333, 584, 704
BspANI	GGCC	2 cut(s)	158, 875
BspCNI	CTCAG	4 cut(s)	153, 428, 605, 940
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	4 cut(s)	10, 217, 742, 824
BspMI	ACCTGC	1 cut(s)	302
BspQI	GCTCTTC	1 cut(s)	912
BspT104I	TTCGAA	2 cut(s)	24, 147
BspT107I	GGYRCC	2 cut(s)	740, 822
BspTNI	GGTCTC	1 cut(s)	449
BsrBI	CCGCTC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	757
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	4 cut(s)	360, 462, 818, 859
BssMI	GATC	1 cut(s)	965
BssNI	GRCGYC	1 cut(s)	425
BssT1I	CCWWGG	2 cut(s)	462, 818
Bst2UI	CCWGG	2 cut(s)	361, 860
Bst4CI	ACNGT	1 cut(s)	117
Bst6I	CTCTTC	1 cut(s)	912
BstACI	GRCGYC	1 cut(s)	425
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstBAI	YACGTR	1 cut(s)	371
BstBI	TTCGAA	2 cut(s)	24, 147
BstC8I	GCNNGC	2 cut(s)	214, 903
BstDEI	CTNAG	5 cut(s)	140, 415, 592, 844, 927
BstDSI	CCRYGG	1 cut(s)	462
BstEII	GGTNACC	1 cut(s)	457
BstF5I	GGATG	3 cut(s)	625, 667, 839
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	212, 495
BstKTI	GATC	1 cut(s)	968
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	1 cut(s)	965
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	6 cut(s)	164, 209, 222, 365, 785, 845
BstNI	CCWGG	2 cut(s)	361, 860
BstPAI	GACNNNNGTC	1 cut(s)	607
BstPI	GGTNACC	1 cut(s)	457
BstSCI	CCNGG	2 cut(s)	359, 858
BstSLI	GKGCMC	1 cut(s)	745
BstV1I	GCAGC	3 cut(s)	151, 713, 977
BstZI	CGGCCG	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	158, 875
BtgI	CCRYGG	1 cut(s)	462
BtgZI	GCGATG	2 cut(s)	73, 966
BtrI	CACGTC	1 cut(s)	124
BtsCI	GGATG	3 cut(s)	625, 667, 839
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	214, 903
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	2 cut(s)	212, 495
Cfr10I	RCCGGY	1 cut(s)	212
CseI	GACGC	1 cut(s)	374
Csp6I	GTAC	3 cut(s)	118, 326, 823
CspCI	CAANNNNNGTGG	2 cut(s)	816, 851
CviAII	CATG	6 cut(s)	278, 463, 770, 780, 941, 961
CviQI	GTAC	3 cut(s)	118, 326, 823
DdeI	CTNAG	5 cut(s)	140, 415, 592, 844, 927
DpnI	GATC	1 cut(s)	967
DpnII	GATC	1 cut(s)	965
DrdI	GACNNNNNNGTC	1 cut(s)	430
DseDI	GACNNNNNNGTC	1 cut(s)	430
EaeI	YGGCCR	2 cut(s)	156, 873
EagI	CGGCCG	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	912
EarI	CTCTTC	1 cut(s)	912
Ecl136II	GAGCTC	1 cut(s)	922
EclXI	CGGCCG	1 cut(s)	156
Eco130I	CCWWGG	2 cut(s)	462, 818
Eco24I	GRGCYC	2 cut(s)	13, 924
Eco31I	GGTCTC	1 cut(s)	449
Eco32I	GATATC	1 cut(s)	692
Eco52I	CGGCCG	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	922
Eco88I	CYCGRG	2 cut(s)	439, 446
Eco91I	GGTNACC	1 cut(s)	457
EcoICRI	GAGCTC	1 cut(s)	922
EcoO65I	GGTNACC	1 cut(s)	457
EcoRII	CCWGG	2 cut(s)	359, 858
EcoRV	GATATC	1 cut(s)	692
EcoT14I	CCWWGG	2 cut(s)	462, 818
EcoT38I	GRGCYC	2 cut(s)	13, 924
ErhI	CCWWGG	2 cut(s)	462, 818
FaeI	CATG	6 cut(s)	281, 466, 773, 783, 944, 964
FaqI	GGGAC	3 cut(s)	113, 377, 876
FatI	CATG	6 cut(s)	277, 462, 769, 779, 940, 960
FauNDI	CATATG	1 cut(s)	511
Fnu4HI	GCNGC	3 cut(s)	165, 702, 991
FokI	GGATG	3 cut(s)	612, 654, 826
FriOI	GRGCYC	2 cut(s)	13, 924
Fsp4HI	GCNGC	3 cut(s)	165, 702, 991
FspBI	CTAG	2 cut(s)	698, 819
FspI	TGCGCA	1 cut(s)	494
GlaI	GCGC	2 cut(s)	211, 494
GluI	GCNGC	3 cut(s)	165, 702, 991
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	158, 875
HapII	CCGG	3 cut(s)	155, 213, 661
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	2 cut(s)	212, 495
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	6 cut(s)	281, 466, 773, 783, 944, 964
Hin6I	GCGC	2 cut(s)	210, 493
HinP1I	GCGC	2 cut(s)	210, 493
HincII	GTYRAC	1 cut(s)	678
HindII	GTYRAC	1 cut(s)	678
HpaII	CCGG	3 cut(s)	155, 213, 661
HphI	GGTGA	4 cut(s)	433, 718, 767, 845
Hpy166II	GTNNAC	1 cut(s)	678
Hpy188III	TCNNGA	7 cut(s)	51, 187, 252, 278, 410, 446, 448
Hpy8I	GTNNAC	1 cut(s)	678
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	3 cut(s)	92, 228, 755
HpyCH4III	ACNGT	1 cut(s)	117
HpyCH4IV	ACGT	3 cut(s)	123, 370, 425
HpyCH4V	TGCA	7 cut(s)	44, 167, 247, 297, 779, 881, 993
HpyF10VI	GCNNNNNNNGC	6 cut(s)	164, 209, 222, 365, 785, 845
HpyF3I	CTNAG	5 cut(s)	140, 415, 592, 844, 927
HpySE526I	ACGT	3 cut(s)	123, 370, 425
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	6 cut(s)	281, 466, 773, 783, 944, 964
HspAI	GCGC	2 cut(s)	210, 493
KpnI	GGTACC	1 cut(s)	826
KroI	GCCGGC	1 cut(s)	212
KroNI	GCCGGC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	965
LguI	GCTCTTC	1 cut(s)	912
LmnI	GCTCC	6 cut(s)	8, 70, 157, 221, 467, 927
Lsp1109I	GCAGC	3 cut(s)	151, 713, 977
LweI	GCATC	4 cut(s)	31, 848, 890, 943
MaeI	CTAG	2 cut(s)	698, 819
MaeII	ACGT	3 cut(s)	123, 370, 425
MaeIII	GTNAC	3 cut(s)	421, 432, 457
MalI	GATC	1 cut(s)	967
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	1 cut(s)	965
MboII	GAAGA	3 cut(s)	361, 699, 929
MhlI	GDGCHC	4 cut(s)	13, 141, 745, 924
MluCI	AATT	5 cut(s)	20, 45, 634, 714, 945
MlyI	GAGTC	3 cut(s)	95, 203, 407
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	9 cut(s)	82, 370, 373, 412, 509, 738, 757, 795, 936
MroNI	GCCGGC	1 cut(s)	212
MseI	TTAA	1 cut(s)	473
MspA1I	CMGCKG	3 cut(s)	335, 704, 971
MspI	CCGG	3 cut(s)	155, 213, 661
MspR9I	CCNGG	2 cut(s)	361, 860
Mva1269I	GAATGC	2 cut(s)	247, 790
MvaI	CCWGG	2 cut(s)	361, 860
MwoI	GCNNNNNNNGC	6 cut(s)	164, 209, 222, 365, 785, 845
NaeI	GCCGGC	1 cut(s)	214
NcoI	CCATGG	1 cut(s)	462
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	1 cut(s)	965
NgoMIV	GCCGGC	1 cut(s)	212
NlaIII	CATG	6 cut(s)	281, 466, 773, 783, 944, 964
NlaIV	GGNNCC	4 cut(s)	10, 217, 742, 824
NmuCI	GTSAC	2 cut(s)	421, 432
NsbI	TGCGCA	1 cut(s)	494
NspV	TTCGAA	2 cut(s)	24, 147
PaeR7I	CTCGAG	1 cut(s)	446
PagI	TCATGA	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	912
PctI	GAATGC	2 cut(s)	247, 790
PdiI	GCCGGC	1 cut(s)	214
PfeI	GAWTC	7 cut(s)	54, 60, 144, 255, 515, 562, 911
PkrI	GCNGC	3 cut(s)	166, 703, 992
PleI	GAGTC	3 cut(s)	95, 202, 407
PpsI	GAGTC	3 cut(s)	95, 202, 407
Ppu21I	YACGTR	1 cut(s)	371
PshAI	GACNNNNGTC	1 cut(s)	607
Psp124BI	GAGCTC	1 cut(s)	924
Psp6I	CCWGG	2 cut(s)	359, 858
PspEI	GGTNACC	1 cut(s)	457
PspGI	CCWGG	2 cut(s)	359, 858
PspN4I	GGNNCC	4 cut(s)	10, 217, 742, 824
PvuII	CAGCTG	1 cut(s)	971
RsaI	GTAC	3 cut(s)	119, 327, 824
RsaNI	GTAC	3 cut(s)	118, 326, 823
SacI	GAGCTC	1 cut(s)	924
SapI	GCTCTTC	1 cut(s)	912
SaqAI	TTAA	1 cut(s)	473
SatI	GCNGC	3 cut(s)	165, 702, 991
Sau3AI	GATC	1 cut(s)	965
ScaI	AGTACT	1 cut(s)	327
SchI	GAGTC	3 cut(s)	95, 203, 407
ScrFI	CCNGG	2 cut(s)	361, 860
SduI	GDGCHC	4 cut(s)	13, 141, 745, 924
SfaNI	GCATC	4 cut(s)	31, 848, 890, 943
Sfr274I	CTCGAG	1 cut(s)	446
SfuI	TTCGAA	2 cut(s)	24, 147
SlaI	CTCGAG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	5 cut(s)	20, 45, 634, 714, 945
SsiI	CCGC	4 cut(s)	6, 333, 584, 704
SspMI	CTAG	2 cut(s)	698, 819
SstI	GAGCTC	1 cut(s)	924
StyD4I	CCNGG	2 cut(s)	359, 858
StyI	CCWWGG	2 cut(s)	462, 818
TaaI	ACNGT	1 cut(s)	117
TaiI	ACGT	3 cut(s)	126, 373, 428
TaqI	TCGA	5 cut(s)	24, 147, 174, 447, 986
TasI	AATT	5 cut(s)	20, 45, 634, 714, 945
TatI	WGTACW	1 cut(s)	325
TfiI	GAWTC	7 cut(s)	54, 60, 144, 255, 515, 562, 911
Tru1I	TTAA	1 cut(s)	473
Tru9I	TTAA	1 cut(s)	473
TseFI	GTSAC	2 cut(s)	421, 432
TseI	GCWGC	3 cut(s)	164, 701, 990
Tsp45I	GTSAC	2 cut(s)	421, 432
TspDTI	ATGAA	5 cut(s)	217, 327, 528, 726, 957
XapI	RAATTY	1 cut(s)	20
XhoI	CTCGAG	1 cut(s)	446
XmaJI	CCTAGG	1 cut(s)	818
XspI	CTAG	2 cut(s)	698, 819
ZraI	GACGTC	1 cut(s)	426
ZrmI	AGTACT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.