Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007738

Physical Location & Seq

Genomic Coordinates Forward (+)

4621985 .. 4623676

Gene Structure 1692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1067200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTCCATGCCACTCTCAGGTCTTGATATGGTGGTAGCCATTGGATCATCAATATATGTGTATGATTTGCGGAACCTAGAAAAGCCAATTCAATCAAAAGATTCAAATATGGATGTTCAGATTGTGTGTGTGAGCTCAATTCCGTATGCTAAAGGATTTGCGGTTGGCTCGATTAATGGACGTGTAGCATTGGAGATTTCCTGTCCATCCAGTTCGGATGACATCAGATATATGTTCCGGTGTCATCCAAAGTCAACTGCTAAGAGATATCACCTAGCATCGGTGAATGACATTGCATTCAATCCGCTGGGACAACTTCTGGTTGTTGCATCAAGCTACACATATCAAGAAGCTAATGAAATAGAAGAGCTTCCTCTGGTATTCGTACATGAAGTTGGCAATGACAACATGAGATCTGTATCTGTTGGAAGTTCAAGCAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000151 GO:0000278 GO:0000775 GO:0000776 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009524 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0022402 GO:0030071 GO:0031461 GO:0031577 GO:0032182 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033597 GO:0043130 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0080008 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1902494 GO:1903047 GO:1905818 GO:1905819 GO:1990234 GO:1990298 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko05166 map04110 map04111 map05166

Pfam Domains

Protein Families

WD40

Protein Analysis

149

Amino Acids

16.21

Weight (kDa)

5.53

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69400 AT1G69400
fragaria_vesca	FvH4_4g30600 FvH4_4g30600 FvH4_4g30600
malus_domestica	MD13G1067000.v1.1 MD13G1067200.v1.1 MD16G1066300.v1.1
prunus_persica	Prupe.1G281000_v2.0.a1 Prupe.1G281000_v2.0.a1 Prupe.1G281000_v2.0.a1
pyrus_communis	pycom16g05770
rosa_chinensis	RchiOBHm_Chr4g0439001
rosa_laevigata	RLG00000006312
rosa_multiflora	Rmu_sc0005887.1_g000008 Rmu_sc0023005.1_g000006
rosa_roxburghii	Rroxscaffold_5G00379990
rosa_rugosa	Rorug04G0315000.1
rosa_samantha	Rh4AG365600 Rh4BG376800 Rh4CG390900 Rh4DG371500
rosa_wichuraiana	Rw0G007390 Rw0G016940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	70, 161, 305
AclWI	GGATC	1 cut(s)	52
AfaI	GTAC	1 cut(s)	387
AfiI	CCNNNNNNNGG	2 cut(s)	17, 280
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	4 cut(s)	92, 105, 301, 435
AjiI	CACGTC	1 cut(s)	182
AluBI	AGCT	4 cut(s)	135, 336, 353, 370
AluI	AGCT	4 cut(s)	135, 336, 353, 370
Alw21I	GWGCWC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	52
AseI	ATTAAT	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	369
AsuHPI	GGTGA	2 cut(s)	263, 295
BanII	GRGCYC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	137
BccI	CCATC	1 cut(s)	214
BfaI	CTAG	2 cut(s)	77, 275
BglII	AGATCT	1 cut(s)	413
BmgBI	CACGTC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	74
BmsI	GCATC	2 cut(s)	287, 338
BsaBI	GATNNNNATC	1 cut(s)	418
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 280
Bse1I	ACTGG	1 cut(s)	210
Bse3DI	GCAATG	2 cut(s)	291, 406
Bse8I	GATNNNNATC	1 cut(s)	418
BseGI	GGATG	4 cut(s)	118, 206, 223, 244
BseJI	GATNNNNATC	1 cut(s)	418
BseLI	CCNNNNNNNGG	2 cut(s)	17, 280
BseMI	GCAATG	2 cut(s)	291, 406
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	210
BseYI	CCCAGC	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	2 cut(s)	17, 280
BsmFI	GGGAC	1 cut(s)	324
BsmI	GAATGC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	44, 413
BspACI	CCGC	3 cut(s)	70, 161, 305
BspCNI	CTCAG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	52
BspQI	GCTCTTC	1 cut(s)	360
BsrDI	GCAATG	2 cut(s)	291, 406
BsrI	ACTGG	1 cut(s)	210
BssMI	GATC	2 cut(s)	44, 413
Bst6I	CTCTTC	1 cut(s)	360
BstDEI	CTNAG	2 cut(s)	16, 261
BstF5I	GGATG	4 cut(s)	118, 206, 223, 244
BstKTI	GATC	2 cut(s)	47, 416
BstMBI	GATC	2 cut(s)	44, 413
BstX2I	RGATCY	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	413
BtrI	CACGTC	1 cut(s)	182
BtsCI	GGATG	4 cut(s)	118, 206, 223, 244
Csp6I	GTAC	1 cut(s)	386
CviAII	CATG	3 cut(s)	7, 389, 409
CviJI	RGCY	7 cut(s)	38, 85, 135, 168, 336, 353, 370
CviKI_1	RGCY	7 cut(s)	38, 85, 135, 168, 336, 353, 370
CviQI	GTAC	1 cut(s)	386
DdeI	CTNAG	2 cut(s)	16, 261
DpnI	GATC	2 cut(s)	46, 415
DpnII	GATC	2 cut(s)	44, 413
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Ecl136II	GAGCTC	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	269
Eco53kI	GAGCTC	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	135
EcoRV	GATATC	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	137
FaeI	CATG	3 cut(s)	10, 392, 412
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	3 cut(s)	6, 388, 408
FokI	GGATG	4 cut(s)	125, 193, 230, 231
FriOI	GRGCYC	1 cut(s)	137
FspBI	CTAG	2 cut(s)	77, 275
GsaI	CCCAGC	1 cut(s)	311
HapII	CCGG	1 cut(s)	238
Hin1II	CATG	3 cut(s)	10, 392, 412
HincII	GTYRAC	1 cut(s)	255
HindII	GTYRAC	1 cut(s)	255
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	2 cut(s)	263, 295
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	3 cut(s)	120, 217, 227
Hpy188III	TCNNGA	2 cut(s)	23, 347
Hpy8I	GTNNAC	1 cut(s)	255
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	2 cut(s)	296, 329
HpyF3I	CTNAG	2 cut(s)	16, 261
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	3 cut(s)	10, 392, 412
Kzo9I	GATC	2 cut(s)	44, 413
LguI	GCTCTTC	1 cut(s)	360
LpnPI	CCDG	7 cut(s)	3, 214, 223, 251, 293, 305, 362
LweI	GCATC	2 cut(s)	287, 338
MaeI	CTAG	2 cut(s)	77, 275
MaeII	ACGT	1 cut(s)	181
MalI	GATC	2 cut(s)	46, 415
MboI	GATC	2 cut(s)	44, 413
MboII	GAAGA	1 cut(s)	377
MflI	RGATCY	1 cut(s)	413
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	2 cut(s)	87, 138
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	1 cut(s)	384
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	307
MspI	CCGG	1 cut(s)	238
Mva1269I	GAATGC	1 cut(s)	296
NdeII	GATC	2 cut(s)	44, 413
NlaIII	CATG	3 cut(s)	10, 392, 412
NlaIV	GGNNCC	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	360
PctI	GAATGC	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	101
PshBI	ATTAAT	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	413
RsaI	GTAC	1 cut(s)	387
RsaNI	GTAC	1 cut(s)	386
SacI	GAGCTC	1 cut(s)	137
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	44, 413
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	8 cut(s)	22, 78, 137, 184, 276, 338, 355, 372
SfaNI	GCATC	2 cut(s)	287, 338
Sse9I	AATT	2 cut(s)	87, 138
SsiI	CCGC	3 cut(s)	70, 161, 305
SspMI	CTAG	2 cut(s)	77, 275
SstI	GAGCTC	1 cut(s)	137
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	170
TasI	AATT	2 cut(s)	87, 138
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TspDTI	ATGAA	2 cut(s)	372, 405
TspGWI	ACGGA	1 cut(s)	132
VspI	ATTAAT	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	2 cut(s)	77, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.