Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023005.1

Orthogroup ID

OG0007738

Physical Location & Seq

Genomic Coordinates Forward (+)

22167 .. 22901

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023005.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgagcggagcccctttgaaattcgaaaccccaatccaagatgcaatttccagaatccgattcgctccaacctcacacaaccttctcatcgcttcttgggactccaaactgcgactgtacgacgtgggaagctcggtgctcagattcgaagctccggccgaagctgcactactcgattgttgcttccagaacgagtcggttgcgtttagcgccggctccgatggcttcattagaaggtatgaattgcattctggaatctgtgagatgattggaaatcatgatgacatagcaacctgcattggatattctgatgaaacaagtaagcttttattaccttgcttttcggatttttattggattccaaagcttctaagtgtaggtttttttatgctaatatcgggaaaaaggtcgactcagtttcctgataggacacgtaataaggcaattaacaaggatctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko05166 map04110 map04111 map05166

Pfam Domains

Protein Families

eIF-5a

Protein Analysis

153

Amino Acids

17.11

Weight (kDa)

5.88

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69400 AT1G69400
fragaria_vesca	FvH4_4g30600 FvH4_4g30600 FvH4_4g30600
malus_domestica	MD13G1067000.v1.1 MD13G1067200.v1.1 MD16G1066300.v1.1
prunus_persica	Prupe.1G281000_v2.0.a1 Prupe.1G281000_v2.0.a1 Prupe.1G281000_v2.0.a1
pyrus_communis	pycom16g05770
rosa_chinensis	RchiOBHm_Chr4g0439001
rosa_laevigata	RLG00000006312
rosa_multiflora	Rmu_sc0005887.1_g000008 Rmu_sc0023005.1_g000006
rosa_roxburghii	Rroxscaffold_5G00379990
rosa_rugosa	Rorug04G0315000.1
rosa_samantha	Rh4AG365600 Rh4BG376800 Rh4CG390900 Rh4DG371500
rosa_wichuraiana	Rw0G007390 Rw0G016940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	302
AccBSI	CCGCTC	1 cut(s)	6
AccI	GTMKAC	1 cut(s)	410
AciI	CCGC	1 cut(s)	6
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	20
AfaI	GTAC	1 cut(s)	119
AflIII	ACRYGT	1 cut(s)	431
AgsI	TTSAA	1 cut(s)	19
AjiI	CACGTC	1 cut(s)	124
AluBI	AGCT	5 cut(s)	132, 152, 164, 325, 367
AluI	AGCT	5 cut(s)	132, 152, 164, 325, 367
Alw21I	GWGCWC	1 cut(s)	141
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	212
AsuII	TTCGAA	2 cut(s)	24, 147
BanII	GRGCYC	1 cut(s)	13
BarI	GAAGNNNNNNTAC	2 cut(s)	153, 185
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	1 cut(s)	215
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmgBI	CACGTC	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	10, 217
BmsI	GCATC	1 cut(s)	31
Bpu14I	TTCGAA	2 cut(s)	24, 147
BsaAI	YACGTR	1 cut(s)	434
Bse118I	RCCGGY	1 cut(s)	212
BseMII	CTCAG	2 cut(s)	154, 428
BseX3I	CGGCCG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	150
Bsh1285I	CGRYCG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	158
BsiEI	CGRYCG	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	2 cut(s)	155, 213
BslFI	GGGAC	1 cut(s)	113
BsmFI	GGGAC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	158
Bsp119I	TTCGAA	2 cut(s)	24, 147
Bsp1286I	GDGCHC	2 cut(s)	13, 141
Bsp143I	GATC	1 cut(s)	454
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	2 cut(s)	153, 427
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	10, 217
BspMI	ACCTGC	1 cut(s)	302
BspT104I	TTCGAA	2 cut(s)	24, 147
BsrBI	CCGCTC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	212
BssMI	GATC	1 cut(s)	454
Bst4CI	ACNGT	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	434
BstBI	TTCGAA	2 cut(s)	24, 147
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	3 cut(s)	140, 371, 414
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	1 cut(s)	457
BstMBI	GATC	1 cut(s)	454
BstMCI	CGRYCG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 209, 222
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BstZI	CGGCCG	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	158
BtgZI	GCGATG	1 cut(s)	73
BtrI	CACGTC	1 cut(s)	124
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	1 cut(s)	214
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	9 cut(s)	11, 132, 152, 158, 164, 216, 225, 325, 367
CviKI_1	RGCY	9 cut(s)	11, 132, 152, 158, 164, 216, 225, 325, 367
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	3 cut(s)	140, 371, 414
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	156
EagI	CGGCCG	1 cut(s)	156
EclXI	CGGCCG	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	13
Eco52I	CGGCCG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	1 cut(s)	281
FaiI	YATR	5 cut(s)	240, 279, 287, 389, 460
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	410
Fnu4HI	GCNGC	1 cut(s)	165
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	165
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	1 cut(s)	165
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	2 cut(s)	155, 213
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HindIII	AAGCTT	2 cut(s)	323, 365
HinfI	GANTC	8 cut(s)	54, 60, 101, 144, 194, 255, 358, 412
HpaII	CCGG	2 cut(s)	155, 213
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	5 cut(s)	59, 143, 220, 310, 346
Hpy188III	TCNNGA	6 cut(s)	51, 187, 252, 278, 399, 422
Hpy8I	GTNNAC	1 cut(s)	411
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	92, 228
HpyCH4III	ACNGT	1 cut(s)	117
HpyCH4IV	ACGT	2 cut(s)	123, 433
HpyCH4V	TGCA	4 cut(s)	44, 167, 247, 297
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 209, 222
HpyF3I	CTNAG	3 cut(s)	140, 371, 414
HpySE526I	ACGT	2 cut(s)	123, 433
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	1 cut(s)	210
KroI	GCCGGC	1 cut(s)	212
KroNI	GCCGGC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	4 cut(s)	8, 70, 157, 221
LpnPI	CCDG	7 cut(s)	64, 168, 200, 226, 237, 307, 435
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	31
MaeII	ACGT	2 cut(s)	123, 433
MalI	GATC	1 cut(s)	456
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	1 cut(s)	454
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	2 cut(s)	13, 141
MluCI	AATT	4 cut(s)	20, 45, 242, 444
MlyI	GAGTC	3 cut(s)	95, 203, 406
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	1 cut(s)	82
MroNI	GCCGGC	1 cut(s)	212
MseI	TTAA	1 cut(s)	447
MspI	CCGG	2 cut(s)	155, 213
Mva1269I	GAATGC	1 cut(s)	247
MwoI	GCNNNNNNNGC	3 cut(s)	164, 209, 222
NaeI	GCCGGC	1 cut(s)	214
NdeII	GATC	1 cut(s)	454
NgoMIV	GCCGGC	1 cut(s)	212
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	2 cut(s)	10, 217
NspV	TTCGAA	2 cut(s)	24, 147
PagI	TCATGA	1 cut(s)	277
PctI	GAATGC	1 cut(s)	247
PdiI	GCCGGC	1 cut(s)	214
PfeI	GAWTC	5 cut(s)	54, 60, 144, 255, 358
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	3 cut(s)	95, 202, 406
PpsI	GAGTC	3 cut(s)	95, 202, 406
Ppu21I	YACGTR	1 cut(s)	434
PspN4I	GGNNCC	2 cut(s)	10, 217
PsuI	RGATCY	1 cut(s)	454
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SalI	GTCGAC	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	1 cut(s)	454
SchI	GAGTC	3 cut(s)	95, 203, 406
SduI	GDGCHC	2 cut(s)	13, 141
SfaNI	GCATC	1 cut(s)	31
SfuI	TTCGAA	2 cut(s)	24, 147
Sse9I	AATT	4 cut(s)	20, 45, 242, 444
SsiI	CCGC	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	117
TaiI	ACGT	2 cut(s)	126, 436
TaqI	TCGA	4 cut(s)	24, 147, 174, 410
TasI	AATT	4 cut(s)	20, 45, 242, 444
TfiI	GAWTC	5 cut(s)	54, 60, 144, 255, 358
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	3 cut(s)	217, 255, 327
XapI	RAATTY	1 cut(s)	20
XmiI	GTMKAC	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.