Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007738

Physical Location & Seq

Genomic Coordinates Forward (+)

4621027 .. 4621563

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1067000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGACCACAATGGCCGCACCTCCTTTGAAGTTCGAAAACCCGATCCGAGATGCAATTTCCAGAATCCGGTTCGCTCCGAAATCAGACAATCTTCTCATCTCCCCTTGGGACTGTAGCTTAAGATTATACGATGTCGGAAGCTCACAGCTCAGACTAGAAGCTCCGTCGGAAGCGGCTCTCCTCGATTGCTGTTTCCAGGATGAGTCCGTCGCGTTTACGCCTGGTTCTGATGGCTTCATCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000151 GO:0000278 GO:0000775 GO:0000776 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009524 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0022402 GO:0030071 GO:0031461 GO:0031577 GO:0032182 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033597 GO:0043130 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0080008 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1902494 GO:1903047 GO:1905818 GO:1905819 GO:1990234 GO:1990298 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko05166 map04110 map04111 map05166

Pfam Domains

Protein Families

WD40

Protein Analysis

82

Amino Acids

8.96

Weight (kDa)

4.65

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69400 AT1G69400
fragaria_vesca	FvH4_4g30600 FvH4_4g30600 FvH4_4g30600
malus_domestica	MD13G1067000.v1.1 MD13G1067200.v1.1 MD16G1066300.v1.1
prunus_persica	Prupe.1G281000_v2.0.a1 Prupe.1G281000_v2.0.a1 Prupe.1G281000_v2.0.a1
pyrus_communis	pycom16g05770
rosa_chinensis	RchiOBHm_Chr4g0439001
rosa_laevigata	RLG00000006312
rosa_multiflora	Rmu_sc0005887.1_g000008 Rmu_sc0023005.1_g000006
rosa_roxburghii	Rroxscaffold_5G00379990
rosa_rugosa	Rorug04G0315000.1
rosa_samantha	Rh4AG365600 Rh4BG376800 Rh4CG390900 Rh4DG371500
rosa_wichuraiana	Rw0G007390 Rw0G016940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	212
AciI	CCGC	2 cut(s)	15, 173
AclWI	GGATC	1 cut(s)	37
AcoI	YGGCCR	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	66
AflII	CTTAAG	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	2 cut(s)	195, 220
AluBI	AGCT	4 cut(s)	117, 141, 148, 161
AluI	AGCT	4 cut(s)	117, 141, 148, 161
AlwI	GGATC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	12
AsuII	TTCGAA	1 cut(s)	33
BccI	CCATC	1 cut(s)	224
BciT130I	CCWGG	2 cut(s)	197, 222
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	1 cut(s)	112
BfrI	CTTAAG	1 cut(s)	118
BisI	GCNGC	2 cut(s)	15, 174
BlsI	GCNGC	2 cut(s)	16, 175
Bme1390I	CCNGG	2 cut(s)	197, 222
BmrFI	CCNGG	2 cut(s)	197, 222
BmsI	GCATC	1 cut(s)	40
Bpu14I	TTCGAA	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	104
BsaWI	WCCGGW	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
BseBI	CCWGG	2 cut(s)	197, 222
BseDI	CCNNGG	1 cut(s)	104
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	163
BseRI	GAGGAG	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	2 cut(s)	15, 173
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	212
BspPI	GGATC	1 cut(s)	37
BspT104I	TTCGAA	1 cut(s)	33
BspTI	CTTAAG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	104
BssMI	GATC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	104
Bst2UI	CCWGG	2 cut(s)	197, 222
Bst4CI	ACNGT	1 cut(s)	113
BstAFI	CTTAAG	1 cut(s)	118
BstBI	TTCGAA	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	149
BstF5I	GGATG	1 cut(s)	205
BstFNI	CGCG	1 cut(s)	212
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstNI	CCWGG	2 cut(s)	197, 222
BstSCI	CCNGG	2 cut(s)	195, 220
BstSFI	CTRYAG	1 cut(s)	112
BstUI	CGCG	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	205
CviJI	RGCY	7 cut(s)	14, 117, 141, 148, 161, 176, 234
CviKI_1	RGCY	7 cut(s)	14, 117, 141, 148, 161, 176, 234
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
EaeI	YGGCCR	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	195, 220
EcoT14I	CCWWGG	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	104
FaiI	YATR	1 cut(s)	127
FaqI	GGGAC	1 cut(s)	122
Fnu4HI	GCNGC	2 cut(s)	15, 174
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	2 cut(s)	15, 174
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	2 cut(s)	15, 174
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	67
HinfI	GANTC	2 cut(s)	63, 203
HpaII	CCGG	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	216
Hpy188I	TCNGA	8 cut(s)	47, 78, 85, 137, 152, 169, 229, 242
Hpy188III	TCNNGA	1 cut(s)	60
Hpy8I	GTNNAC	1 cut(s)	216
Hpy99I	CGWCG	2 cut(s)	169, 212
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4V	TGCA	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	2 cut(s)	79, 166
LpnPI	CCDG	6 cut(s)	73, 80, 182, 207, 209, 234
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	155
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	1 cut(s)	83
MluCI	AATT	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	212
MmeI	TCCRAC	2 cut(s)	115, 147
MnlI	CCTC	2 cut(s)	30, 191
MseI	TTAA	1 cut(s)	119
MspCI	CTTAAG	1 cut(s)	118
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	2 cut(s)	197, 222
MvaI	CCWGG	2 cut(s)	197, 222
MvnI	CGCG	1 cut(s)	212
NdeII	GATC	1 cut(s)	42
NspV	TTCGAA	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	16, 175
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	195, 220
PspGI	CCWGG	2 cut(s)	195, 220
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	2 cut(s)	15, 174
Sau3AI	GATC	1 cut(s)	42
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	197, 222
SetI	ASST	5 cut(s)	22, 119, 143, 150, 163
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	2 cut(s)	15, 173
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	195, 220
StyI	CCWWGG	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	2 cut(s)	33, 183
TasI	AATT	1 cut(s)	54
TauI	GCSGC	2 cut(s)	17, 176
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	226
TspGWI	ACGGA	2 cut(s)	153, 196
Vha464I	CTTAAG	1 cut(s)	118
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.