Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007738

Physical Location & Seq

Genomic Coordinates Reverse (-)

28437600 .. 28440515

Gene Structure 2916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G281000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAGCGGAGCTGCCTTGAAGTTCGAAAACCCGATCCGAGATGCAATTTCCAGAATCCGGTTCGCTCCGAAATCAGACAGCCTCCTCATCTCTTCTTGGGACTCTAGCCTGAGATTGTACGACGTCGGAAACTCGGCACTCAGGTTAGAAGCTTCGTCGGAAGCTGCGCTCCTCGATTGTTGCTTCCAGAACGAGTCCGTCGCTTTTAGCGCTGGCTCTGATGGCTTCATTAGAAGGTATGACTTGCATTCTGGAATTCATGATTCAATTGGAAATCATGATGACACATCAACGTGTGTTGGATATTCTGATGAAACCTGCCAAGTAATCACTGCTGGTTTGGATAAGAAGATATTGTCATGGGACACACGTACGCCGAAGGGTATTGCGTGTGTAAGAAATATGGATTCAGAGGTGATGTCCATGTCACTCTCAGGCTTTGATATGATGGTAGCCGTTGGAGCATCAATATATGTATATGATTTGCGCAGGCTAGAAAAACCATTTCAATCAAAAGATTCGCATATGGGTGTTCAGATTGTATGTGTTAGTTCAATTCCGTATGCTAAAGGGTTTGCAGTTGGCTCAGTAGATGGACGTGTAGCATTGGAGATTTCCTGCCCATCGAATTCAGATGACATCAGATATATGTTCCGGTGTCATCCAAAGTCAACTGACAGCAAATATCATCTGGTGTCGGTGAATGACATTGTATTCAATCCGATCATCTACGGTGCCTTTGTTACTGGTGACAATGAGGGTTATGTTACTGCATGGGATGCTACAAGCAAAAGGAGGCTGTTTCAGTTGCCTAGATACCCAAACAGTGTGGCATCCTTATCGTACGATCACAAGGGACAACTTCTGGCTGTCGCATCAAGCTACACATATCAAGAAGCTAATGAAATAGAAGAGCCTCCTTTGGTATTCATACATGAAGTTGACAATGACAACATGAGATCTGTATCTGTTGGAAGTTCAAGCAGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000075 GO:0000151 GO:0000278 GO:0000775 GO:0000776 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007346 GO:0008150 GO:0009524 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0010965 GO:0022402 GO:0030071 GO:0031461 GO:0031577 GO:0032182 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033597 GO:0043130 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051129 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0065007 GO:0071173 GO:0071174 GO:0080008 GO:0098687 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1902494 GO:1903047 GO:1905818 GO:1905819 GO:1990234 GO:1990298 GO:2000816 GO:2001251

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko05166 map04110 map04111 map05166

Pfam Domains

Protein Families

WD40

Protein Analysis

331

Amino Acids

36.41

Weight (kDa)

5.39

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007738)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69400 AT1G69400
fragaria_vesca	FvH4_4g30600 FvH4_4g30600 FvH4_4g30600
malus_domestica	MD13G1067000.v1.1 MD13G1067200.v1.1 MD16G1066300.v1.1
prunus_persica	Prupe.1G281000_v2.0.a1 Prupe.1G281000_v2.0.a1 Prupe.1G281000_v2.0.a1
pyrus_communis	pycom16g05770
rosa_chinensis	RchiOBHm_Chr4g0439001
rosa_laevigata	RLG00000006312
rosa_multiflora	Rmu_sc0005887.1_g000008 Rmu_sc0023005.1_g000006
rosa_roxburghii	Rroxscaffold_5G00379990
rosa_rugosa	Rorug04G0315000.1
rosa_samantha	Rh4AG365600 Rh4BG376800 Rh4CG390900 Rh4DG371500
rosa_wichuraiana	Rw0G007390 Rw0G016940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
Acc16I	TGCGCA	1 cut(s)	488
Acc36I	ACCTGC	1 cut(s)	326
AccB1I	GGYRCC	1 cut(s)	734
AccBSI	CCGCTC	1 cut(s)	6
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	2 cut(s)	255, 628
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	3 cut(s)	119, 373, 845
AfeI	AGCGCT	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	57
AflIII	ACRYGT	3 cut(s)	293, 368, 598
AgsI	TTSAA	6 cut(s)	19, 267, 509, 555, 718, 981
AjiI	CACGTC	1 cut(s)	599
AluBI	AGCT	5 cut(s)	11, 152, 164, 882, 899
AluI	AGCT	5 cut(s)	11, 152, 164, 882, 899
AlwI	GGATC	1 cut(s)	28
Aor51HI	AGCGCT	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	11, 164
ApoI	RAATTY	2 cut(s)	255, 628
AspLEI	GCGC	3 cut(s)	169, 212, 489
AsuHPI	GGTGA	3 cut(s)	427, 712, 761
AsuII	TTCGAA	1 cut(s)	24
BanI	GGYRCC	1 cut(s)	734
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	4 cut(s)	215, 442, 587, 631
BceAI	ACGGC	1 cut(s)	440
BcgI	CGANNNNNNTGC	2 cut(s)	822, 856
BfaI	CTAG	3 cut(s)	105, 494, 813
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	326
BglII	AGATCT	1 cut(s)	959
BisI	GCNGC	2 cut(s)	12, 165
BlsI	GCNGC	2 cut(s)	13, 166
BmgBI	CACGTC	1 cut(s)	599
BmiI	GGNNCC	1 cut(s)	736
BmsI	GCATC	5 cut(s)	31, 473, 769, 842, 884
Bpu14I	TTCGAA	1 cut(s)	24
BsaAI	YACGTR	1 cut(s)	371
BsaBI	GATNNNNATC	1 cut(s)	964
BsaHI	GRCGYC	1 cut(s)	123
BsaWI	WCCGGW	2 cut(s)	57, 654
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	751
Bse8I	GATNNNNATC	1 cut(s)	964
BseGI	GGATG	3 cut(s)	661, 784, 833
BseJI	GATNNNNATC	1 cut(s)	964
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMII	CTCAG	4 cut(s)	101, 154, 447, 600
BseNI	ACTGG	1 cut(s)	751
BseRI	GAGGAG	2 cut(s)	74, 161
BseXI	GCAGC	1 cut(s)	151
BshNI	GGYRCC	1 cut(s)	734
BsiSI	CCGG	2 cut(s)	58, 655
BsiWI	CGTACG	2 cut(s)	371, 843
BslFI	GGGAC	3 cut(s)	113, 377, 870
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmFI	GGGAC	3 cut(s)	113, 377, 870
BsmI	GAATGC	1 cut(s)	247
Bsp119I	TTCGAA	1 cut(s)	24
Bsp143I	GATC	4 cut(s)	33, 723, 847, 959
BspACI	CCGC	1 cut(s)	6
BspCNI	CTCAG	4 cut(s)	102, 153, 446, 599
BspHI	TCATGA	2 cut(s)	259, 277
BspLI	GGNNCC	1 cut(s)	736
BspMI	ACCTGC	1 cut(s)	326
BspPI	GGATC	1 cut(s)	28
BspQI	GCTCTTC	1 cut(s)	906
BspT104I	TTCGAA	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	734
BsrBI	CCGCTC	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	751
BssMI	GATC	4 cut(s)	33, 723, 847, 959
BssNI	GRCGYC	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	734, 827
Bst6I	CTCTTC	2 cut(s)	97, 906
BstACI	GRCGYC	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	779
BstBAI	YACGTR	1 cut(s)	371
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	214, 491
BstDEI	CTNAG	4 cut(s)	110, 140, 433, 586
BstF5I	GGATG	3 cut(s)	661, 784, 833
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	3 cut(s)	169, 212, 489
BstKTI	GATC	4 cut(s)	36, 726, 850, 962
BstMBI	GATC	4 cut(s)	33, 723, 847, 959
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 222, 461, 779
BstV1I	GCAGC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	959
BstYI	RGATCY	1 cut(s)	959
BtrI	CACGTC	1 cut(s)	599
BtsCI	GGATG	3 cut(s)	661, 784, 833
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	330, 832
BveI	ACCTGC	1 cut(s)	326
Cac8I	GCNNGC	2 cut(s)	214, 491
CciI	TCATGA	2 cut(s)	259, 277
CfoI	GCGC	3 cut(s)	169, 212, 489
Csp6I	GTAC	3 cut(s)	118, 372, 844
CspCI	CAANNNNNGTGG	2 cut(s)	810, 845
CviAII	CATG	7 cut(s)	260, 278, 360, 424, 774, 935, 955
CviQI	GTAC	3 cut(s)	118, 372, 844
DdeI	CTNAG	4 cut(s)	110, 140, 433, 586
DpnI	GATC	4 cut(s)	35, 725, 849, 961
DpnII	GATC	4 cut(s)	33, 723, 847, 959
Eam1104I	CTCTTC	2 cut(s)	97, 906
EarI	CTCTTC	2 cut(s)	97, 906
Eco47III	AGCGCT	1 cut(s)	211
EcoRI	GAATTC	2 cut(s)	255, 628
FaeI	CATG	7 cut(s)	263, 281, 363, 427, 777, 938, 958
FaqI	GGGAC	3 cut(s)	113, 377, 870
FatI	CATG	7 cut(s)	259, 277, 359, 423, 773, 934, 954
FauNDI	CATATG	1 cut(s)	525
Fnu4HI	GCNGC	2 cut(s)	12, 165
FokI	GGATG	3 cut(s)	648, 791, 820
Fsp4HI	GCNGC	2 cut(s)	12, 165
FspBI	CTAG	3 cut(s)	105, 494, 813
FspI	TGCGCA	1 cut(s)	488
GlaI	GCGC	3 cut(s)	168, 211, 488
GluI	GCNGC	2 cut(s)	12, 165
HaeII	RGCGCY	1 cut(s)	213
HapII	CCGG	2 cut(s)	58, 655
HhaI	GCGC	3 cut(s)	169, 212, 489
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	7 cut(s)	263, 281, 363, 427, 777, 938, 958
Hin6I	GCGC	3 cut(s)	167, 210, 487
HinP1I	GCGC	3 cut(s)	167, 210, 487
HincII	GTYRAC	2 cut(s)	672, 943
HindII	GTYRAC	2 cut(s)	672, 943
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	6 cut(s)	54, 101, 194, 263, 407, 518
HpaII	CCGG	2 cut(s)	58, 655
HphI	GGTGA	3 cut(s)	427, 712, 761
Hpy166II	GTNNAC	2 cut(s)	672, 943
Hpy188III	TCNNGA	6 cut(s)	51, 187, 252, 260, 278, 893
Hpy8I	GTNNAC	2 cut(s)	672, 943
Hpy99I	CGWCG	4 cut(s)	125, 128, 160, 203
HpyAV	CCTTC	2 cut(s)	228, 373
HpyCH4III	ACNGT	2 cut(s)	734, 827
HpyCH4IV	ACGT	4 cut(s)	123, 293, 370, 598
HpyCH4V	TGCA	4 cut(s)	44, 247, 578, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 222, 461, 779
HpyF3I	CTNAG	4 cut(s)	110, 140, 433, 586
HpySE526I	ACGT	4 cut(s)	123, 293, 370, 598
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	7 cut(s)	263, 281, 363, 427, 777, 938, 958
HspAI	GCGC	3 cut(s)	167, 210, 487
Kzo9I	GATC	4 cut(s)	33, 723, 847, 959
LguI	GCTCTTC	1 cut(s)	906
LmnI	GCTCC	4 cut(s)	8, 70, 174, 461
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	5 cut(s)	31, 473, 769, 842, 884
MaeI	CTAG	3 cut(s)	105, 494, 813
MaeII	ACGT	4 cut(s)	123, 293, 370, 598
MaeIII	GTNAC	4 cut(s)	426, 742, 749, 766
MalI	GATC	4 cut(s)	35, 725, 849, 961
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	4 cut(s)	33, 723, 847, 959
MboII	GAAGA	3 cut(s)	84, 361, 923
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	1 cut(s)	959
MluCI	AATT	5 cut(s)	45, 255, 267, 555, 628
MlyI	GAGTC	2 cut(s)	95, 203
MmeI	TCCRAC	5 cut(s)	106, 138, 280, 439, 952
MnlI	CCTC	7 cut(s)	92, 95, 182, 406, 751, 789, 927
MslI	CAYNNNNRTG	2 cut(s)	292, 528
MspI	CCGG	2 cut(s)	58, 655
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	247
MwoI	GCNNNNNNNGC	4 cut(s)	209, 222, 461, 779
NdeI	CATATG	1 cut(s)	525
NdeII	GATC	4 cut(s)	33, 723, 847, 959
NlaIII	CATG	7 cut(s)	263, 281, 363, 427, 777, 938, 958
NlaIV	GGNNCC	1 cut(s)	736
NmeAIII	GCCGAG	1 cut(s)	113
NmuCI	GTSAC	2 cut(s)	426, 749
NsbI	TGCGCA	1 cut(s)	488
NspV	TTCGAA	1 cut(s)	24
PagI	TCATGA	2 cut(s)	259, 277
PciSI	GCTCTTC	1 cut(s)	906
PctI	GAATGC	1 cut(s)	247
PfeI	GAWTC	4 cut(s)	54, 263, 407, 518
Pfl23II	CGTACG	2 cut(s)	371, 843
PkrI	GCNGC	2 cut(s)	13, 166
PleI	GAGTC	2 cut(s)	95, 202
PpsI	GAGTC	2 cut(s)	95, 202
Ppu21I	YACGTR	1 cut(s)	371
PspLI	CGTACG	2 cut(s)	371, 843
PspN4I	GGNNCC	1 cut(s)	736
PsuI	RGATCY	1 cut(s)	959
RsaI	GTAC	3 cut(s)	119, 373, 845
RsaNI	GTAC	3 cut(s)	118, 372, 844
RseI	CAYNNNNRTG	2 cut(s)	292, 528
SapI	GCTCTTC	1 cut(s)	906
SatI	GCNGC	2 cut(s)	12, 165
Sau3AI	GATC	4 cut(s)	33, 723, 847, 959
SchI	GAGTC	2 cut(s)	95, 203
SfaNI	GCATC	5 cut(s)	31, 473, 769, 842, 884
SfuI	TTCGAA	1 cut(s)	24
SmiMI	CAYNNNNRTG	2 cut(s)	292, 528
Sse9I	AATT	5 cut(s)	45, 255, 267, 555, 628
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	3 cut(s)	105, 494, 813
TaaI	ACNGT	2 cut(s)	734, 827
TaiI	ACGT	4 cut(s)	126, 296, 373, 601
TaqI	TCGA	3 cut(s)	24, 174, 626
TasI	AATT	5 cut(s)	45, 255, 267, 555, 628
TfiI	GAWTC	4 cut(s)	54, 263, 407, 518
TscAI	CASTG	2 cut(s)	337, 832
TseFI	GTSAC	2 cut(s)	426, 749
TseI	GCWGC	2 cut(s)	11, 164
Tsp45I	GTSAC	2 cut(s)	426, 749
TspDTI	ATGAA	6 cut(s)	217, 248, 327, 918, 919, 951
TspGWI	ACGGA	2 cut(s)	187, 549
TspRI	CASTG	2 cut(s)	337, 832
XapI	RAATTY	2 cut(s)	255, 628
XspI	CTAG	3 cut(s)	105, 494, 813
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.