RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G70200 |
| fragaria_vesca | FvH4_4g34980 FvH4_5g29371 |
| malus_domestica | MD16G1087500.v1.1 |
| prunus_persica | Prupe.1G259500_v2.0.a1 |
| pyrus_communis | pycom13g07510 pycom16g07510 |
| rosa_chinensis | RchiOBHm_Chr4g0444501 |
| rosa_laevigata | RLG00000005829 |
| rosa_multiflora | Rmu_co8304031.1_g000001 Rmu_sc0003839.1_g000008 Rmu_sc0035747.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00384980 |
| rosa_rugosa | Rorug04G0353200 |
| rosa_samantha | Rh4AG413400 Rh4BG424900 Rh4CG439500 Rh4DG420400 |
| rosa_wichuraiana | Rw4G035510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 791 |
| AccBSI | CCGCTC | 1 cut(s) | 1012 |
| AccII | CGCG | 1 cut(s) | 106 |
| AciI | CCGC | 4 cut(s) | 1012, 1181, 1422, 1580 |
| AclWI | GGATC | 4 cut(s) | 482, 680, 693, 1525 |
| AcsI | RAATTY | 2 cut(s) | 141, 281 |
| AcuI | CTGAAG | 1 cut(s) | 1296 |
| AcvI | CACGTG | 1 cut(s) | 1061 |
| AcyI | GRCGYC | 1 cut(s) | 1563 |
| AfaI | GTAC | 3 cut(s) | 109, 401, 854 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 893, 1494 |
| AflII | CTTAAG | 3 cut(s) | 479, 509, 611 |
| AflIII | ACRYGT | 1 cut(s) | 1058 |
| AjnI | CCWGG | 2 cut(s) | 1152, 1513 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 537, 569 |
| Alw26I | GTCTC | 2 cut(s) | 504, 1127 |
| AlwI | GGATC | 4 cut(s) | 482, 680, 693, 1525 |
| AoxI | GGCC | 1 cut(s) | 1480 |
| ApeKI | GCWGC | 3 cut(s) | 461, 1175, 1178 |
| ApoI | RAATTY | 2 cut(s) | 141, 281 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 138, 170, 790, 822, 1048, 1080 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 755 |
| AspLEI | GCGC | 1 cut(s) | 106 |
| AsuHPI | GGTGA | 3 cut(s) | 290, 1168, 1549 |
| AsuII | TTCGAA | 1 cut(s) | 1067 |
| BamHI | GGATCC | 1 cut(s) | 685 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 836, 868 |
| BauI | CACGAG | 1 cut(s) | 375 |
| BbrPI | CACGTG | 1 cut(s) | 1061 |
| BbsI | GAAGAC | 4 cut(s) | 683, 1008, 1284, 1466 |
| BbvI | GCAGC | 3 cut(s) | 448, 1162, 1190 |
| BccI | CCATC | 2 cut(s) | 281, 1244 |
| BciT130I | CCWGG | 2 cut(s) | 1154, 1515 |
| BcoDI | GTCTC | 2 cut(s) | 504, 1127 |
| BfaI | CTAG | 5 cut(s) | 912, 1026, 1130, 1349, 1425 |
| BfmI | CTRYAG | 2 cut(s) | 1176, 1218 |
| BfrI | CTTAAG | 3 cut(s) | 479, 509, 611 |
| BglII | AGATCT | 1 cut(s) | 607 |
| BisI | GCNGC | 4 cut(s) | 462, 1176, 1179, 1581 |
| BlpI | GCTNAGC | 1 cut(s) | 772 |
| BlsI | GCNGC | 4 cut(s) | 463, 1177, 1180, 1582 |
| Bme1390I | CCNGG | 2 cut(s) | 1154, 1515 |
| BmiI | GGNNCC | 1 cut(s) | 687 |
| BmrFI | CCNGG | 2 cut(s) | 1154, 1515 |
| BmsI | GCATC | 1 cut(s) | 724 |
| BpiI | GAAGAC | 4 cut(s) | 683, 1008, 1284, 1466 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 32 |
| BpmI | CTGGAG | 1 cut(s) | 561 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 772 |
| Bpu14I | TTCGAA | 1 cut(s) | 1067 |
| BpuEI | CTTGAG | 2 cut(s) | 441, 479 |
| BsaAI | YACGTR | 1 cut(s) | 1061 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1508 |
| BsaHI | GRCGYC | 1 cut(s) | 1563 |
| BsaJI | CCNNGG | 1 cut(s) | 1513 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 893, 1494 |
| Bse1I | ACTGG | 2 cut(s) | 544, 1564 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1508 |
| BseBI | CCWGG | 2 cut(s) | 1154, 1515 |
| BseDI | CCNNGG | 1 cut(s) | 1513 |
| BseGI | GGATG | 5 cut(s) | 65, 970, 1201, 1261, 1310 |
| BseJI | GATNNNNATC | 1 cut(s) | 1508 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 893, 1494 |
| BseMII | CTCAG | 4 cut(s) | 717, 1158, 1200, 1329 |
| BseNI | ACTGG | 2 cut(s) | 544, 1564 |
| BseRI | GAGGAG | 2 cut(s) | 518, 1404 |
| BseXI | GCAGC | 3 cut(s) | 448, 1162, 1190 |
| BsgI | GTGCAG | 1 cut(s) | 896 |
| Bsh1236I | CGCG | 1 cut(s) | 106 |
| BshFI | GGCC | 1 cut(s) | 1482 |
| BslFI | GGGAC | 2 cut(s) | 777, 1510 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 893, 1494 |
| BsmAI | GTCTC | 2 cut(s) | 504, 1127 |
| BsmFI | GGGAC | 2 cut(s) | 777, 1510 |
| BsnI | GGCC | 1 cut(s) | 1482 |
| Bsp119I | TTCGAA | 1 cut(s) | 1067 |
| Bsp143I | GATC | 4 cut(s) | 487, 607, 685, 1517 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 772 |
| BspACI | CCGC | 4 cut(s) | 1012, 1181, 1422, 1580 |
| BspANI | GGCC | 1 cut(s) | 1482 |
| BspCNI | CTCAG | 4 cut(s) | 718, 1159, 1201, 1328 |
| BspFNI | CGCG | 1 cut(s) | 106 |
| BspLI | GGNNCC | 1 cut(s) | 687 |
| BspMAI | CTGCAG | 1 cut(s) | 1180 |
| BspPI | GGATC | 4 cut(s) | 482, 680, 693, 1525 |
| BspT104I | TTCGAA | 1 cut(s) | 1067 |
| BspTI | CTTAAG | 3 cut(s) | 479, 509, 611 |
| BsrBI | CCGCTC | 1 cut(s) | 1012 |
| BsrI | ACTGG | 2 cut(s) | 544, 1564 |
| BssECI | CCNNGG | 1 cut(s) | 1513 |
| BssMI | GATC | 4 cut(s) | 487, 607, 685, 1517 |
| BssNI | GRCGYC | 1 cut(s) | 1563 |
| BssSI | CACGAG | 1 cut(s) | 375 |
| Bst2BI | CACGAG | 1 cut(s) | 375 |
| Bst2UI | CCWGG | 2 cut(s) | 1154, 1515 |
| Bst4CI | ACNGT | 3 cut(s) | 756, 866, 1301 |
| Bst6I | CTCTTC | 3 cut(s) | 76, 927, 972 |
| BstACI | GRCGYC | 1 cut(s) | 1563 |
| BstAFI | CTTAAG | 3 cut(s) | 479, 509, 611 |
| BstBAI | YACGTR | 1 cut(s) | 1061 |
| BstBI | TTCGAA | 1 cut(s) | 1067 |
| BstF5I | GGATG | 5 cut(s) | 65, 970, 1201, 1261, 1310 |
| BstFNI | CGCG | 1 cut(s) | 106 |
| BstHHI | GCGC | 1 cut(s) | 106 |
| BstKTI | GATC | 4 cut(s) | 490, 610, 688, 1520 |
| BstMAI | GTCTC | 2 cut(s) | 504, 1127 |
| BstMBI | GATC | 4 cut(s) | 487, 607, 685, 1517 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 461, 1421, 1589 |
| BstNI | CCWGG | 2 cut(s) | 1154, 1515 |
| BstSCI | CCNGG | 2 cut(s) | 1152, 1513 |
| BstSFI | CTRYAG | 2 cut(s) | 1176, 1218 |
| BstUI | CGCG | 1 cut(s) | 106 |
| BstV1I | GCAGC | 3 cut(s) | 448, 1162, 1190 |
| BstV2I | GAAGAC | 4 cut(s) | 683, 1008, 1284, 1466 |
| BstX2I | RGATCY | 2 cut(s) | 607, 685 |
| BstYI | RGATCY | 2 cut(s) | 607, 685 |
| BsuRI | GGCC | 1 cut(s) | 1482 |
| BtsCI | GGATG | 5 cut(s) | 65, 970, 1201, 1261, 1310 |
| CfoI | GCGC | 1 cut(s) | 106 |
| CseI | GACGC | 1 cut(s) | 1552 |
| Csp6I | GTAC | 3 cut(s) | 108, 400, 853 |
| CviAII | CATG | 2 cut(s) | 710, 1121 |
| CviQI | GTAC | 3 cut(s) | 108, 400, 853 |
| DpnI | GATC | 4 cut(s) | 489, 609, 687, 1519 |
| DpnII | GATC | 4 cut(s) | 487, 607, 685, 1517 |
| DraI | TTTAAA | 1 cut(s) | 625 |
| Eam1104I | CTCTTC | 3 cut(s) | 76, 927, 972 |
| EarI | CTCTTC | 3 cut(s) | 76, 927, 972 |
| Eco57I | CTGAAG | 1 cut(s) | 1296 |
| Eco72I | CACGTG | 1 cut(s) | 1061 |
| EcoRI | GAATTC | 1 cut(s) | 141 |
| EcoRII | CCWGG | 2 cut(s) | 1152, 1513 |
| FaeI | CATG | 2 cut(s) | 713, 1124 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1269, 1301 |
| FaqI | GGGAC | 2 cut(s) | 777, 1510 |
| FatI | CATG | 2 cut(s) | 709, 1120 |
| FauI | CCCGC | 1 cut(s) | 1429 |
| Fnu4HI | GCNGC | 4 cut(s) | 462, 1176, 1179, 1581 |
| FokI | GGATG | 5 cut(s) | 52, 977, 1208, 1268, 1297 |
| Fsp4HI | GCNGC | 4 cut(s) | 462, 1176, 1179, 1581 |
| FspBI | CTAG | 5 cut(s) | 912, 1026, 1130, 1349, 1425 |
| GlaI | GCGC | 1 cut(s) | 105 |
| GluI | GCNGC | 4 cut(s) | 462, 1176, 1179, 1581 |
| GsuI | CTGGAG | 1 cut(s) | 561 |
| HaeIII | GGCC | 1 cut(s) | 1482 |
| HgaI | GACGC | 1 cut(s) | 1552 |
| HhaI | GCGC | 1 cut(s) | 106 |
| Hin1I | GRCGYC | 1 cut(s) | 1563 |
| Hin1II | CATG | 2 cut(s) | 713, 1124 |
| Hin6I | GCGC | 1 cut(s) | 104 |
| HinP1I | GCGC | 1 cut(s) | 104 |
| HindIII | AAGCTT | 3 cut(s) | 476, 881, 1358 |
| HphI | GGTGA | 3 cut(s) | 290, 1168, 1549 |
| Hpy166II | GTNNAC | 4 cut(s) | 205, 759, 822, 853 |
| Hpy188I | TCNGA | 9 cut(s) | 93, 244, 829, 964, 973, 1168, 1210, 1296, 1318 |
| Hpy188III | TCNNGA | 4 cut(s) | 158, 899, 1234, 1286 |
| Hpy8I | GTNNAC | 4 cut(s) | 205, 759, 822, 853 |
| Hpy99I | CGWCG | 1 cut(s) | 434 |
| HpyAV | CCTTC | 9 cut(s) | 293, 317, 778, 838, 896, 1427, 1438, 1534, 1540 |
| HpyCH4III | ACNGT | 3 cut(s) | 756, 866, 1301 |
| HpyCH4IV | ACGT | 2 cut(s) | 113, 1060 |
| HpyCH4V | TGCA | 4 cut(s) | 21, 737, 877, 1178 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 461, 1421, 1589 |
| HpySE526I | ACGT | 2 cut(s) | 113, 1060 |
| Hsp92I | GRCGYC | 1 cut(s) | 1563 |
| Hsp92II | CATG | 2 cut(s) | 713, 1124 |
| HspAI | GCGC | 1 cut(s) | 104 |
| Kzo9I | GATC | 4 cut(s) | 487, 607, 685, 1517 |
| LmnI | GCTCC | 1 cut(s) | 8 |
| Lsp1109I | GCAGC | 3 cut(s) | 448, 1162, 1190 |
| LweI | GCATC | 1 cut(s) | 724 |
| MaeI | CTAG | 5 cut(s) | 912, 1026, 1130, 1349, 1425 |
| MaeII | ACGT | 2 cut(s) | 113, 1060 |
| MaeIII | GTNAC | 2 cut(s) | 515, 571 |
| MalI | GATC | 4 cut(s) | 489, 609, 687, 1519 |
| MbiI | CCGCTC | 1 cut(s) | 1012 |
| MboI | GATC | 4 cut(s) | 487, 607, 685, 1517 |
| MflI | RGATCY | 2 cut(s) | 607, 685 |
| MluCI | AATT | 6 cut(s) | 129, 141, 281, 411, 435, 552 |
| MlyI | GAGTC | 1 cut(s) | 248 |
| MmeI | TCCRAC | 1 cut(s) | 428 |
| MroXI | GAANNNNTTC | 1 cut(s) | 755 |
| MseI | TTAA | 8 cut(s) | 410, 480, 510, 612, 624, 1079, 1532, 1556 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1052, 1194 |
| MspA1I | CMGCKG | 2 cut(s) | 659, 1181 |
| MspCI | CTTAAG | 3 cut(s) | 479, 509, 611 |
| MspR9I | CCNGG | 2 cut(s) | 1154, 1515 |
| MvaI | CCWGG | 2 cut(s) | 1154, 1515 |
| MvnI | CGCG | 1 cut(s) | 106 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 461, 1421, 1589 |
| NdeII | GATC | 4 cut(s) | 487, 607, 685, 1517 |
| NlaIII | CATG | 2 cut(s) | 713, 1124 |
| NlaIV | GGNNCC | 1 cut(s) | 687 |
| NmuCI | GTSAC | 2 cut(s) | 515, 571 |
| NspV | TTCGAA | 1 cut(s) | 1067 |
| PdmI | GAANNNNTTC | 1 cut(s) | 755 |
| PkrI | GCNGC | 4 cut(s) | 463, 1177, 1180, 1582 |
| PleI | GAGTC | 1 cut(s) | 247 |
| PmaCI | CACGTG | 1 cut(s) | 1061 |
| PmlI | CACGTG | 1 cut(s) | 1061 |
| PpsI | GAGTC | 1 cut(s) | 247 |
| Ppu21I | YACGTR | 1 cut(s) | 1061 |
| PsiI | TTATAA | 1 cut(s) | 791 |
| Psp6I | CCWGG | 2 cut(s) | 1152, 1513 |
| PspCI | CACGTG | 1 cut(s) | 1061 |
| PspGI | CCWGG | 2 cut(s) | 1152, 1513 |
| PspN4I | GGNNCC | 1 cut(s) | 687 |
| PstI | CTGCAG | 1 cut(s) | 1180 |
| PsuI | RGATCY | 2 cut(s) | 607, 685 |
| PvuII | CAGCTG | 1 cut(s) | 659 |
| RsaI | GTAC | 3 cut(s) | 109, 401, 854 |
| RsaNI | GTAC | 3 cut(s) | 108, 400, 853 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1052, 1194 |
| SaqAI | TTAA | 8 cut(s) | 410, 480, 510, 612, 624, 1079, 1532, 1556 |
| SatI | GCNGC | 4 cut(s) | 462, 1176, 1179, 1581 |
| Sau3AI | GATC | 4 cut(s) | 487, 607, 685, 1517 |
| SchI | GAGTC | 1 cut(s) | 248 |
| ScrFI | CCNGG | 2 cut(s) | 1154, 1515 |
| SfaNI | GCATC | 1 cut(s) | 724 |
| SfcI | CTRYAG | 2 cut(s) | 1176, 1218 |
| SfuI | TTCGAA | 1 cut(s) | 1067 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1052, 1194 |
| SmlI | CTYRAG | 5 cut(s) | 456, 479, 494, 509, 611 |
| SmoI | CTYRAG | 5 cut(s) | 456, 479, 494, 509, 611 |
| Sse9I | AATT | 6 cut(s) | 129, 141, 281, 411, 435, 552 |
| SsiI | CCGC | 4 cut(s) | 1012, 1181, 1422, 1580 |
| SspMI | CTAG | 5 cut(s) | 912, 1026, 1130, 1349, 1425 |
| StyD4I | CCNGG | 2 cut(s) | 1152, 1513 |
| TaaI | ACNGT | 3 cut(s) | 756, 866, 1301 |
| TaiI | ACGT | 2 cut(s) | 116, 1063 |
| TaqI | TCGA | 5 cut(s) | 145, 157, 429, 842, 1067 |
| TasI | AATT | 6 cut(s) | 129, 141, 281, 411, 435, 552 |
| TatI | WGTACW | 1 cut(s) | 852 |
| TauI | GCSGC | 1 cut(s) | 1583 |
| Tru1I | TTAA | 8 cut(s) | 410, 480, 510, 612, 624, 1079, 1532, 1556 |
| Tru9I | TTAA | 8 cut(s) | 410, 480, 510, 612, 624, 1079, 1532, 1556 |
| TseFI | GTSAC | 2 cut(s) | 515, 571 |
| TseI | GCWGC | 3 cut(s) | 461, 1175, 1178 |
| Tsp45I | GTSAC | 2 cut(s) | 515, 571 |
| TspGWI | ACGGA | 5 cut(s) | 16, 21, 217, 876, 1331 |
| Vha464I | CTTAAG | 3 cut(s) | 479, 509, 611 |
| XapI | RAATTY | 2 cut(s) | 141, 281 |
| XmnI | GAANNNNTTC | 1 cut(s) | 755 |
| XspI | CTAG | 5 cut(s) | 912, 1026, 1130, 1349, 1425 |