Rroxscaffold_5G00384980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0012534
Physical Location & Seq
Forward (+)
64174751 .. 64180094
5344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384980.1

Sequence Viewer

Length: 1635 bp
ATGATAAGCACCGCGAGGCTTCCACCTTCCTCCTCCTCTCTCTTCACCACTCCTTCTCTCTCCTTCTCCTTCAAAACCCACTTACGTTTCGCTTCCACTTCTTCACTCCCCACCGCCATTTTCAAACGCAACCGCTTCCTGTCCTCCGTTCACCTCACGCGCCTCCGCTTCACCGCGGTCCACGCCCAGAAGAGCCGCAAGTTCGGATTGCAGTCCGTGCGGAAGAAGCGGAAAGGGGGCAACAAGCTCTTGGCAATGGACGACGACTCCGATGACGGTGACGTGGACGGCGGAGATGAGGAGCTGGAATTGGACGGTGAGGATGACGAAGACGAAGGTCTGATGGTGCCGTTTGGGGAGATGAAGAAGTGGCTGGAGAAGAAGCCGCGTGGGTTCGGCGAAGGCAGAGTCTACGACACTCCGATTGAAGACCAACTGCTCGAAGAAATACAGGTTGAGACTTCCACTAAGCTCCAAAACGACGCCGTAAAGGCCAATCTTAAACCTAAGAAGAACACCGCTGATGAGGTGGTTGTTCCGGCTGGGTTTCGGGTGAGGGTGACGAACCTGCCGAAGAAGAAGAATGTGCACCGGGATTTGACGGCGGCGTTTAAGCTGGTTCCGGGTTTGCTGAGCATAAACCCAGCTGTGACTGGAAACAAGAAGACCAAGGACCCCATTTGCAAGGGTTTTGCTTTTGTGCATTTCAAGACTGAGAAGGATGCAGCTAGGTTTGTGGAAACATTTTCTTCGCAGAGTATTACATTTGGGAAAGTTCAGAAGCAGATAAAATGCGAGGTGGTAACTTCACCGGATTCTGATGTAGAACAATCAAAATCTGCTCCTCGAATAGCTGCTCCACGACTAAATGCTCTTAAACCCGTAACAGTTAACTATACTGTCCGTGGTCCTAAACCGGCAACAGATCCTGCTACTAAAACCTCAACCAATAAGTCTACTGATTCCCAACTGACTGTTTCTGCATCTGGAGACCAGAAAGTGAATTCTGACTTGGATGATTCTCCACTGGACACATTGGAGGAGACTGTATCTGAAGAGTATGATGGCTCTGATGTTGAATTCCTTGAACCAGAACTGGAAGATTTCATGGAGAATCTTAAAAATTCAGGGGACTATCTTGATGCTCAACTGACAGCTGCATTTGGAGATCAGAAGATGGATTCTGACTTGGATGATGTTACCCTGGACACATTGGATGAGACTGTATCTGATGATGAATATGATGGCCCTGATGTTGAGATCCTTGGAGCAGAACCGGAAGATTTCAAGGAGAATCTGCAAACTTCCACTGTGTCAGACCTAAATGGTGGAGACAGCAATATCATAGAATTAACAACAGAATCCGAGTCTTCTGCAGATTCGTCTTCCTCAAAGCAGTTAATTGCTAAGAGTAAAGAAGAGAAGGTTCCTCGCAAAAAGCAAGCTGTGAAAGGGAAAGAAGAAGGGACTCCTAAGAAGAAGAAGTTAACCGTGAAAGAAAAAGCACCAAAAGTTCCAAAGTTGGTCGTCTCCGGGTCTTCCAAGAGGTTAAAGGTCAAGGAGAAGGCTGTGCTTAGTGATGTGTTCTCGAAATATGGGTTAAACCCAGCTTTGGCTTCAAATGAAGATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

544

Amino Acids

59.66

Weight (kDa)

5.25

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70200
fragaria_vesca FvH4_4g34980 FvH4_5g29371
malus_domestica MD16G1087500.v1.1
prunus_persica Prupe.1G259500_v2.0.a1
pyrus_communis pycom13g07510 pycom16g07510
rosa_chinensis RchiOBHm_Chr4g0444501
rosa_laevigata RLG00000005829
rosa_multiflora Rmu_co8304031.1_g000001 Rmu_sc0003839.1_g000008 Rmu_sc0035747.1_g000002
rosa_roxburghii Rroxscaffold_5G00384980
rosa_rugosa Rorug04G0353200
rosa_samantha Rh4AG413400 Rh4BG424900 Rh4CG439500 Rh4DG420400
rosa_wichuraiana Rw4G035510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 576
AccB1I GGYRCC 1 cut(s) 346
AccI GTMKAC 2 cut(s) 411, 956
AccII CGCG 4 cut(s) 14, 160, 176, 388
AclWI GGATC 2 cut(s) 920, 1255
AcsI RAATTY 3 cut(s) 1003, 1079, 1123
AcuI CTGAAG 1 cut(s) 1074
AcyI GRCGYC 1 cut(s) 483
AfiI CCNNNNNNNGG 1 cut(s) 1612
AgsI TTSAA 8 cut(s) 73, 124, 428, 709, 1079, 1088, 1288, 1620
AjiI CACGTC 1 cut(s) 283
AjnI CCWGG 1 cut(s) 1203
AjuI GAANNNNNNNTTGG 2 cut(s) 995, 1027
Alw21I GWGCWC 1 cut(s) 591
Alw26I GTCTC 6 cut(s) 452, 984, 1037, 1214, 1326, 1534
Alw44I GTGCAC 1 cut(s) 587
AlwI GGATC 2 cut(s) 920, 1255
AlwNI CAGNNNCTG 1 cut(s) 929
AoxI GGCC 2 cut(s) 492, 1246
ApaLI GTGCAC 1 cut(s) 587
ApeKI GCWGC 3 cut(s) 725, 854, 1157
ApoI RAATTY 3 cut(s) 1003, 1079, 1123
ArsI GACNNNNNNTTYG 2 cut(s) 393, 425
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 4 cut(s) 178, 673, 908, 1247
AsuC2I CCSGG 3 cut(s) 593, 624, 1534
AsuHPI GGTGA 8 cut(s) 37, 143, 163, 290, 329, 565, 571, 801
AvaII GGWCC 3 cut(s) 178, 673, 908
BaeGI GKGCMC 1 cut(s) 591
BanI GGYRCC 1 cut(s) 346
BbsI GAAGAC 6 cut(s) 336, 435, 671, 1362, 1377, 1530
Bbv12I GWGCWC 1 cut(s) 591
BbvI GCAGC 3 cut(s) 737, 841, 1144
BccI CCATC 4 cut(s) 337, 1058, 1171, 1238
BceAI ACGGC 4 cut(s) 304, 334, 470, 618
BcgI CGANNNNNNTGC 2 cut(s) 1355, 1389
BciT130I CCWGG 1 cut(s) 1205
BcnI CCSGG 3 cut(s) 593, 624, 1534
BcoDI GTCTC 6 cut(s) 452, 984, 1037, 1214, 1326, 1534
BfaI CTAG 1 cut(s) 729
BfmI CTRYAG 1 cut(s) 1374
BfuAI ACCTGC 1 cut(s) 576
BglI GCCNNNNNGGC 1 cut(s) 491
BisI GCNGC 6 cut(s) 196, 386, 606, 726, 855, 1158
BlpI GCTNAGC 1 cut(s) 632
BlsI GCNGC 6 cut(s) 197, 387, 607, 727, 856, 1159
Bme1390I CCNGG 4 cut(s) 593, 624, 1205, 1534
Bme18I GGWCC 3 cut(s) 178, 673, 908
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 4 cut(s) 178, 673, 908, 1247
BmiI GGNNCC 4 cut(s) 348, 621, 675, 1428
BmrFI CCNGG 4 cut(s) 593, 624, 1205, 1534
BmsI GCATC 3 cut(s) 712, 992, 1132
BoxI GACNNNNGTC 1 cut(s) 336
BpiI GAAGAC 6 cut(s) 336, 435, 671, 1362, 1377, 1530
BpmI CTGGAG 2 cut(s) 395, 1008
Bpu1102I GCTNAGC 1 cut(s) 632
BpuMI CCSGG 3 cut(s) 593, 624, 1534
BsaHI GRCGYC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 984
BsaJI CCNNGG 5 cut(s) 174, 669, 904, 1203, 1264
BsaWI WCCGGW 2 cut(s) 811, 1276
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 1 cut(s) 1612
Bse118I RCCGGY 1 cut(s) 916
Bse1I ACTGG 3 cut(s) 658, 1032, 1101
Bse3DI GCAATG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 1205
BseDI CCNNGG 5 cut(s) 174, 669, 904, 1203, 1264
BseGI GGATG 5 cut(s) 328, 727, 1021, 1198, 1222
BseLI CCNNNNNNNGG 1 cut(s) 1612
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 2 cut(s) 623, 705
BseNI ACTGG 3 cut(s) 658, 1032, 1101
BseRI GAGGAG 5 cut(s) 22, 25, 314, 834, 1055
BseSI GKGCMC 1 cut(s) 591
BseXI GCAGC 3 cut(s) 737, 841, 1144
BseYI CCCAGC 3 cut(s) 542, 643, 1606
Bsh1236I CGCG 4 cut(s) 14, 160, 176, 388
BshFI GGCC 2 cut(s) 494, 1248
BshNI GGYRCC 1 cut(s) 346
BsiHKAI GWGCWC 1 cut(s) 591
BsiSI CCGG 7 cut(s) 539, 592, 623, 812, 917, 1277, 1533
BslFI GGGAC 2 cut(s) 1145, 1480
BslI CCNNNNNNNGG 1 cut(s) 1612
BsmAI GTCTC 6 cut(s) 452, 984, 1037, 1214, 1326, 1534
BsmBI CGTCTC 1 cut(s) 1534
BsmFI GGGAC 2 cut(s) 1145, 1480
BsnI GGCC 2 cut(s) 494, 1248
Bso31I GGTCTC 1 cut(s) 984
Bsp1286I GDGCHC 1 cut(s) 591
Bsp143I GATC 3 cut(s) 925, 1168, 1260
Bsp1720I GCTNAGC 1 cut(s) 632
BspANI GGCC 2 cut(s) 494, 1248
BspCNI CTCAG 2 cut(s) 624, 706
BspFNI CGCG 4 cut(s) 14, 160, 176, 388
BspLI GGNNCC 4 cut(s) 348, 621, 675, 1428
BspMAI CTGCAG 1 cut(s) 1378
BspMI ACCTGC 1 cut(s) 576
BspPI GGATC 2 cut(s) 920, 1255
BspQI GCTCTTC 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 346
BspTNI GGTCTC 1 cut(s) 984
BsrDI GCAATG 1 cut(s) 261
BsrFI RCCGGY 1 cut(s) 916
BsrI ACTGG 3 cut(s) 658, 1032, 1101
BssAI RCCGGY 1 cut(s) 916
BssECI CCNNGG 5 cut(s) 174, 669, 904, 1203, 1264
BssMI GATC 3 cut(s) 925, 1168, 1260
BssNI GRCGYC 1 cut(s) 483
BssT1I CCWWGG 2 cut(s) 669, 1264
Bst2UI CCWGG 1 cut(s) 1205
Bst4CI ACNGT 9 cut(s) 278, 317, 889, 901, 976, 1048, 1225, 1312, 1492
Bst6I CTCTTC 4 cut(s) 47, 185, 1050, 1413
BstACI GRCGYC 1 cut(s) 483
BstAPI GCANNNNNTGC 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 1443
BstDEI CTNAG 7 cut(s) 468, 507, 632, 714, 1407, 1473, 1574
BstDSI CCRYGG 2 cut(s) 174, 904
BstF5I GGATG 5 cut(s) 328, 727, 1021, 1198, 1222
BstFNI CGCG 4 cut(s) 14, 160, 176, 388
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 3 cut(s) 928, 1171, 1263
BstMAI GTCTC 6 cut(s) 452, 984, 1037, 1214, 1326, 1534
BstMBI GATC 3 cut(s) 925, 1168, 1260
BstMWI GCNNNNNNNGC 4 cut(s) 182, 217, 226, 491
BstNI CCWGG 1 cut(s) 1205
BstPAI GACNNNNGTC 1 cut(s) 336
BstSCI CCNGG 4 cut(s) 591, 622, 1203, 1532
BstSFI CTRYAG 1 cut(s) 1374
BstSLI GKGCMC 1 cut(s) 591
BstUI CGCG 4 cut(s) 14, 160, 176, 388
BstV1I GCAGC 3 cut(s) 737, 841, 1144
BstV2I GAAGAC 6 cut(s) 336, 435, 671, 1362, 1377, 1530
BstX2I RGATCY 2 cut(s) 925, 1260
BstYI RGATCY 2 cut(s) 925, 1260
BsuRI GGCC 2 cut(s) 494, 1248
BtgI CCRYGG 2 cut(s) 174, 904
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 5 cut(s) 328, 727, 1021, 1198, 1222
BtsIMutI CAGTG 2 cut(s) 1025, 1308
BveI ACCTGC 1 cut(s) 576
Cac8I GCNNGC 1 cut(s) 1443
CaiI CAGNNNCTG 1 cut(s) 929
CfoI GCGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 916
Cfr13I GGNCC 4 cut(s) 178, 673, 908, 1247
Cfr42I CCGCGG 1 cut(s) 177
CseI GACGC 1 cut(s) 491
CviAII CATG 1 cut(s) 1108
DdeI CTNAG 7 cut(s) 468, 507, 632, 714, 1407, 1473, 1574
DpnI GATC 3 cut(s) 927, 1170, 1262
DpnII GATC 3 cut(s) 925, 1168, 1260
Eam1104I CTCTTC 4 cut(s) 47, 185, 1050, 1413
EarI CTCTTC 4 cut(s) 47, 185, 1050, 1413
EciI GGCGGA 1 cut(s) 306
Eco130I CCWWGG 2 cut(s) 669, 1264
Eco31I GGTCTC 1 cut(s) 984
Eco47I GGWCC 3 cut(s) 178, 673, 908
Eco57I CTGAAG 1 cut(s) 1074
EcoO109I RGGNCCY 1 cut(s) 673
EcoRI GAATTC 2 cut(s) 1003, 1079
EcoRII CCWGG 1 cut(s) 1203
EcoT14I CCWWGG 2 cut(s) 669, 1264
ErhI CCWWGG 2 cut(s) 669, 1264
Esp3I CGTCTC 1 cut(s) 1534
FaeI CATG 1 cut(s) 1111
FaiI YATR 7 cut(s) 638, 897, 1062, 1109, 1242, 1346, 1596
FaqI GGGAC 2 cut(s) 1145, 1480
FatI CATG 1 cut(s) 1107
FblI GTMKAC 2 cut(s) 411, 956
Fnu4HI GCNGC 6 cut(s) 196, 386, 606, 726, 855, 1158
FokI GGATG 5 cut(s) 335, 734, 1028, 1205, 1229
Fsp4HI GCNGC 6 cut(s) 196, 386, 606, 726, 855, 1158
FspBI CTAG 1 cut(s) 729
GlaI GCGC 1 cut(s) 161
GluI GCNGC 6 cut(s) 196, 386, 606, 726, 855, 1158
GsaI CCCAGC 3 cut(s) 546, 647, 1610
GsuI CTGGAG 2 cut(s) 395, 1008
HaeIII GGCC 2 cut(s) 494, 1248
HapII CCGG 7 cut(s) 539, 592, 623, 812, 917, 1277, 1533
HgaI GACGC 1 cut(s) 491
HhaI GCGC 1 cut(s) 162
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 1 cut(s) 1111
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 2 cut(s) 892, 1488
HindII GTYRAC 2 cut(s) 892, 1488
HpaI GTTAAC 2 cut(s) 892, 1488
HpaII CCGG 7 cut(s) 539, 592, 623, 812, 917, 1277, 1533
HphI GGTGA 8 cut(s) 37, 143, 163, 290, 329, 565, 571, 801
Hpy166II GTNNAC 8 cut(s) 151, 181, 286, 412, 589, 892, 957, 1488
Hpy188III TCNNGA 4 cut(s) 709, 987, 1139, 1588
Hpy8I GTNNAC 8 cut(s) 151, 181, 286, 412, 589, 892, 957, 1488
Hpy99I CGWCG 2 cut(s) 266, 485
HpyCH4III ACNGT 9 cut(s) 278, 317, 889, 901, 976, 1048, 1225, 1312, 1492
HpyCH4IV ACGT 2 cut(s) 85, 282
HpyCH4V TGCA 9 cut(s) 211, 589, 684, 703, 725, 983, 1160, 1300, 1376
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 217, 226, 491
HpyF3I CTNAG 7 cut(s) 468, 507, 632, 714, 1407, 1473, 1574
HpySE526I ACGT 2 cut(s) 85, 282
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 1 cut(s) 1111
HspAI GCGC 1 cut(s) 160
KspAI GTTAAC 2 cut(s) 892, 1488
KspI CCGCGG 1 cut(s) 177
Kzo9I GATC 3 cut(s) 925, 1168, 1260
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 5 cut(s) 301, 477, 847, 862, 1268
Lsp1109I GCAGC 3 cut(s) 737, 841, 1144
LweI GCATC 3 cut(s) 712, 992, 1132
MaeI CTAG 1 cut(s) 729
MaeII ACGT 2 cut(s) 85, 282
MaeIII GTNAC 6 cut(s) 278, 559, 649, 802, 883, 1198
MalI GATC 3 cut(s) 927, 1170, 1262
MboI GATC 3 cut(s) 925, 1168, 1260
MflI RGATCY 2 cut(s) 925, 1260
MhlI GDGCHC 1 cut(s) 591
MluCI AATT 6 cut(s) 308, 1003, 1079, 1123, 1349, 1401
MlyI GAGTC 4 cut(s) 260, 417, 1376, 1462
MspA1I CMGCKG 4 cut(s) 176, 521, 647, 1157
MspI CCGG 7 cut(s) 539, 592, 623, 812, 917, 1277, 1533
MspR9I CCNGG 4 cut(s) 593, 624, 1205, 1534
MvaI CCWGG 1 cut(s) 1205
MvnI CGCG 4 cut(s) 14, 160, 176, 388
MwoI GCNNNNNNNGC 4 cut(s) 182, 217, 226, 491
NciI CCSGG 3 cut(s) 593, 624, 1534
NdeII GATC 3 cut(s) 925, 1168, 1260
NlaIII CATG 1 cut(s) 1111
NlaIV GGNNCC 4 cut(s) 348, 621, 675, 1428
NmuCI GTSAC 3 cut(s) 278, 559, 649
PciSI GCTCTTC 1 cut(s) 185
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 569
PfeI GAWTC 8 cut(s) 815, 962, 1019, 1114, 1181, 1294, 1361, 1379
PkrI GCNGC 6 cut(s) 197, 387, 607, 727, 856, 1159
PleI GAGTC 4 cut(s) 260, 416, 1375, 1462
PpsI GAGTC 4 cut(s) 260, 416, 1375, 1462
PpuMI RGGWCCY 1 cut(s) 673
PshAI GACNNNNGTC 1 cut(s) 336
Psp5II RGGWCCY 1 cut(s) 673
Psp6I CCWGG 1 cut(s) 1203
PspFI CCCAGC 3 cut(s) 542, 643, 1606
PspGI CCWGG 1 cut(s) 1203
PspN4I GGNNCC 4 cut(s) 348, 621, 675, 1428
PspPI GGNCC 4 cut(s) 178, 673, 908, 1247
PspPPI RGGWCCY 1 cut(s) 673
PstI CTGCAG 1 cut(s) 1378
PstNI CAGNNNCTG 1 cut(s) 929
PsuI RGATCY 2 cut(s) 925, 1260
PvuII CAGCTG 2 cut(s) 647, 1157
SacII CCGCGG 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 185
SatI GCNGC 6 cut(s) 196, 386, 606, 726, 855, 1158
Sau3AI GATC 3 cut(s) 925, 1168, 1260
Sau96I GGNCC 4 cut(s) 178, 673, 908, 1247
SchI GAGTC 4 cut(s) 260, 417, 1376, 1462
ScrFI CCNGG 4 cut(s) 593, 624, 1205, 1534
SduI GDGCHC 1 cut(s) 591
SfaNI GCATC 3 cut(s) 712, 992, 1132
SfcI CTRYAG 1 cut(s) 1374
Sfr303I CCGCGG 1 cut(s) 177
SgrBI CCGCGG 1 cut(s) 177
SinI GGWCC 3 cut(s) 178, 673, 908
Sse9I AATT 6 cut(s) 308, 1003, 1079, 1123, 1349, 1401
SspMI CTAG 1 cut(s) 729
StyD4I CCNGG 4 cut(s) 591, 622, 1203, 1532
StyI CCWWGG 2 cut(s) 669, 1264
TaaI ACNGT 9 cut(s) 278, 317, 889, 901, 976, 1048, 1225, 1312, 1492
TaiI ACGT 2 cut(s) 88, 285
TaqI TCGA 3 cut(s) 441, 847, 1589
TasI AATT 6 cut(s) 308, 1003, 1079, 1123, 1349, 1401
TauI GCSGC 3 cut(s) 198, 388, 608
TfiI GAWTC 8 cut(s) 815, 962, 1019, 1114, 1181, 1294, 1361, 1379
TscAI CASTG 2 cut(s) 1032, 1315
TseFI GTSAC 3 cut(s) 278, 559, 649
TseI GCWGC 3 cut(s) 725, 854, 1157
Tsp45I GTSAC 3 cut(s) 278, 559, 649
TspDTI ATGAA 3 cut(s) 377, 1096, 1251
TspGWI ACGGA 3 cut(s) 136, 205, 893
TspRI CASTG 2 cut(s) 1032, 1315
VneI GTGCAC 1 cut(s) 587
VpaK11BI GGWCC 3 cut(s) 178, 673, 908
XapI RAATTY 3 cut(s) 1003, 1079, 1123
XmiI GTMKAC 2 cut(s) 411, 956
XspI CTAG 1 cut(s) 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.