Prupe.1G259500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012534
Physical Location & Seq
Forward (+)
26891475 .. 26893783
2309 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G259500.1

Sequence Viewer

Length: 1542 bp
ATGATAAGCACCGGTAGGTTTTCACCTTCCTGCAATTACAAGTCTCTTTCCACCACCGGCCTCTCATTCTCACCATACAAAACCCACTTGGGCTTGGCCTTCTTCCCACACGCATCTTCAACCTCTTCGCTCCTCACCACTATTTTCAAAACCAGCTTGTTCCTCTCTCCCATTCAACAAACCCAACGCACAATTCTCGGCTTTCGCGGCGTCCATGGCCAGAGAATTAGTGGTTCCGGAGTCTCTGCCCGAAAAAAGCAGCGAAAAGGCGGCGTTGAGATCTTAGAAATGGACGACTCTGATGATGAGGAGTTGGACTTGGACTTGGACGGCTCGGATGATGAGTTGGGTGGCGACGGTGACGACGAAGAAGATACGTTTGTGCCGTTTGGGAAGATGAAGAAGTGGCTGGAGAAGAAGCCCCTTGGGTTTGGCGAAGGCAAAGAGTACGACATTTCAATTGAAGAGAAGCTGCTCGAAGAAATGGAGAAGAGTAGACAAGCGCAGGCTGGGAATCTCACTAAGCTCTCAGACGACCCTGAAAACCTTAATTCCAAGCAAGACCAAAGCAAGAACAAGAACAAAGCTGAAGAAGTGGTTCCAGCTGGAGTTAGAGTTCGTGTGCTGAACCTTCCAAAGAAGAAGAACATACATAGGGATTTGAGCGCAGCTTTCAAATTAGTCCCTGGTTTGCTTAGCATAAACCCTGCGGTTTCTGGAAACAAGAAAACTAAGGACCCCATTTGCAAGGGTTTTGCTTTTGTTCATTTTAAGTCTGAGCAGGATGCAACTAGGTTTGTTGAAATGTTCTCTTCTCAGAGTGTTCAATTTGGTAAAATTCAGAAACAGATAAAATGCGAGTTTGTAGATTCGCAAGCCCTGAATTATGAGCAGAAAAAATCAACAGATAACCATACTGCTCCTCGACTAGCTGTTTCTGGACTGGGAGGAGGTCAGAAAGCTGTTGCTGAATTGGATGTTTCTTCCTTGGATGCATGGGAGGAGACCATACCTGATGAATATGACGGCTCTGATGTGGAGCTTGTTGGACCAGAACTGGATGATGCCATAGATAATATGCAGAGAGCTGATTGTGACTTTGATGATTCTTCCCTGGACACATGGGAGGAGACCATACTTGATGAATATGAAGGCTCTGATGTTGAGGTTGTGGGACCAGAACTGGAAGATGCCATAGAGAATCTGGACTCTACCAGTAGGTCAGACCTAAATGGTGGAGATAGAGATAGCATGGAATTAAGGACAGAATCTGAGTCCTTATTAGCACATTCATCTTCCTCAAAGCAGCTACTTTCCAAGAGTAAAGAAGAGAAGCTTCCTCACCGAAAGCCGGTTGTGAAAGGGAAAGCAGAAAGGTCTCCTAAGAAGAAACTAACTGTGAAAGAAAAAACAGTGAAGGTTCCAAAATTGACTGTGGGGGGATCTGCCAAGAGGTTAAAGGTCAAGGAGAAGGCTGTGCTTAACGATGTGTTCTCAAAATATGGGCCCAAAGCTACTTTGGCTACGAAGGAAGATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

514

Amino Acids

56.54

Weight (kDa)

5.28

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70200
fragaria_vesca FvH4_4g34980 FvH4_5g29371
malus_domestica MD16G1087500.v1.1
prunus_persica Prupe.1G259500_v2.0.a1
pyrus_communis pycom13g07510 pycom16g07510
rosa_chinensis RchiOBHm_Chr4g0444501
rosa_laevigata RLG00000005829
rosa_multiflora Rmu_co8304031.1_g000001 Rmu_sc0003839.1_g000008 Rmu_sc0035747.1_g000002
rosa_roxburghii Rroxscaffold_5G00384980
rosa_rugosa Rorug04G0353200
rosa_samantha Rh4AG413400 Rh4BG424900 Rh4CG439500 Rh4DG420400
rosa_wichuraiana Rw4G035510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 496
AccII CGCG 1 cut(s) 207
AccIII TCCGGA 1 cut(s) 236
AciI CCGC 3 cut(s) 207, 270, 710
AclWI GGATC 1 cut(s) 1450
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 1 cut(s) 837
AcuI CTGAAG 1 cut(s) 609
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 1 cut(s) 1351
AgeI ACCGGT 1 cut(s) 11
AgsI TTSAA 8 cut(s) 120, 148, 176, 459, 464, 676, 803, 827
AjnI CCWGG 2 cut(s) 685, 1113
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AloI GAACNNNNNNTCC 2 cut(s) 600, 632
Alw26I GTCTC 5 cut(s) 48, 247, 998, 1124, 1383
AlwI GGATC 1 cut(s) 1450
AlwNI CAGNNNCTG 1 cut(s) 1271
Aor13HI TCCGGA 1 cut(s) 236
AoxI GGCC 4 cut(s) 58, 96, 217, 1505
ApaI GGGCCC 1 cut(s) 1509
ApeKI GCWGC 4 cut(s) 259, 472, 668, 1306
ApoI RAATTY 1 cut(s) 837
AsiGI ACCGGT 1 cut(s) 11
Asp700I GAANNNNTTC 1 cut(s) 597
AspLEI GCGC 2 cut(s) 505, 668
AspS9I GGNCC 5 cut(s) 736, 1049, 1175, 1505, 1506
AsuHPI GGTGA 5 cut(s) 15, 63, 127, 371, 1334
AvaII GGWCC 3 cut(s) 736, 1049, 1175
BaeGI GKGCMC 1 cut(s) 1509
BaeI ACNNNNGTAYC 2 cut(s) 366, 399
BalI TGGCCA 1 cut(s) 219
BanII GRGCYC 1 cut(s) 1509
BbvI GCAGC 4 cut(s) 271, 459, 680, 1318
BceAI ACGGC 3 cut(s) 346, 370, 1042
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BciT130I CCWGG 2 cut(s) 687, 1115
BcoDI GTCTC 5 cut(s) 48, 247, 998, 1124, 1383
BfaI CTAG 2 cut(s) 792, 929
BglII AGATCT 1 cut(s) 279
BisI GCNGC 6 cut(s) 208, 260, 271, 473, 669, 1307
BlpI GCTNAGC 1 cut(s) 695
BlsI GCNGC 6 cut(s) 209, 261, 272, 474, 670, 1308
Bme1390I CCNGG 2 cut(s) 687, 1115
Bme18I GGWCC 3 cut(s) 736, 1049, 1175
BmgT120I GGNCC 5 cut(s) 736, 1049, 1175, 1505, 1506
BmiI GGNNCC 6 cut(s) 235, 600, 738, 1176, 1422, 1507
BmrFI CCNGG 2 cut(s) 687, 1115
BmrI ACTGGG 1 cut(s) 953
BmsI GCATC 5 cut(s) 122, 775, 982, 1054, 1180
BmuI ACTGGG 1 cut(s) 953
BpmI CTGGAG 2 cut(s) 431, 627
Bpu1102I GCTNAGC 1 cut(s) 695
BsaHI GRCGYC 1 cut(s) 210
BsaI GGTCTC 3 cut(s) 998, 1124, 1383
BsaJI CCNNGG 5 cut(s) 214, 424, 685, 987, 1113
BsaWI WCCGGW 2 cut(s) 11, 236
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 1 cut(s) 1351
Bse118I RCCGGY 3 cut(s) 11, 56, 1351
Bse1I ACTGG 4 cut(s) 948, 1062, 1188, 1215
BseAI TCCGGA 1 cut(s) 236
BseBI CCWGG 2 cut(s) 687, 1115
BseDI CCNNGG 5 cut(s) 214, 424, 685, 987, 1113
BseGI GGATG 5 cut(s) 343, 790, 982, 997, 1066
BseLI CCNNNNNNNGG 1 cut(s) 1351
BseMII CTCAG 4 cut(s) 543, 768, 830, 1263
BseNI ACTGG 4 cut(s) 948, 1062, 1188, 1215
BseRI GAGGAG 6 cut(s) 122, 323, 912, 963, 1016, 1142
BseSI GKGCMC 1 cut(s) 1509
BseXI GCAGC 4 cut(s) 271, 459, 680, 1318
BseYI CCCAGC 1 cut(s) 509
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 4 cut(s) 60, 98, 219, 1507
BshTI ACCGGT 1 cut(s) 11
BsiSI CCGG 4 cut(s) 12, 57, 237, 1352
BslFI GGGAC 2 cut(s) 668, 1188
BslI CCNNNNNNNGG 1 cut(s) 1351
BsmAI GTCTC 5 cut(s) 48, 247, 998, 1124, 1383
BsmFI GGGAC 2 cut(s) 668, 1188
BsnI GGCC 4 cut(s) 60, 98, 219, 1507
Bso31I GGTCTC 3 cut(s) 998, 1124, 1383
Bsp120I GGGCCC 1 cut(s) 1505
Bsp1286I GDGCHC 1 cut(s) 1509
Bsp13I TCCGGA 1 cut(s) 236
Bsp143I GATC 2 cut(s) 279, 1442
Bsp1720I GCTNAGC 1 cut(s) 695
Bsp19I CCATGG 1 cut(s) 214
BspACI CCGC 3 cut(s) 207, 270, 710
BspANI GGCC 4 cut(s) 60, 98, 219, 1507
BspCNI CTCAG 4 cut(s) 542, 769, 829, 1264
BspEI TCCGGA 1 cut(s) 236
BspFNI CGCG 1 cut(s) 207
BspLI GGNNCC 6 cut(s) 235, 600, 738, 1176, 1422, 1507
BspPI GGATC 1 cut(s) 1450
BspTNI GGTCTC 3 cut(s) 998, 1124, 1383
BsrFI RCCGGY 3 cut(s) 11, 56, 1351
BsrI ACTGG 4 cut(s) 948, 1062, 1188, 1215
BssAI RCCGGY 3 cut(s) 11, 56, 1351
BssECI CCNNGG 5 cut(s) 214, 424, 685, 987, 1113
BssMI GATC 2 cut(s) 279, 1442
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 3 cut(s) 214, 424, 987
Bst2UI CCWGG 2 cut(s) 687, 1115
Bst4CI ACNGT 4 cut(s) 359, 1399, 1414, 1435
Bst6I CTCTTC 5 cut(s) 130, 459, 485, 817, 1323
BstACI GRCGYC 1 cut(s) 210
BstC8I GCNNGC 2 cut(s) 507, 876
BstDEI CTNAG 9 cut(s) 283, 522, 529, 695, 732, 777, 816, 1272, 1383
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 5 cut(s) 343, 790, 982, 997, 1066
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 2 cut(s) 505, 668
BstKTI GATC 2 cut(s) 282, 1445
BstMAI GTCTC 5 cut(s) 48, 247, 998, 1124, 1383
BstMBI GATC 2 cut(s) 279, 1442
BstMWI GCNNNNNNNGC 3 cut(s) 207, 216, 1520
BstNI CCWGG 2 cut(s) 687, 1115
BstSCI CCNGG 2 cut(s) 685, 1113
BstSLI GKGCMC 1 cut(s) 1509
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 4 cut(s) 271, 459, 680, 1318
BstX2I RGATCY 2 cut(s) 279, 1442
BstYI RGATCY 2 cut(s) 279, 1442
BsuRI GGCC 4 cut(s) 60, 98, 219, 1507
BtgI CCRYGG 1 cut(s) 214
BtsCI GGATG 5 cut(s) 343, 790, 982, 997, 1066
BtsIMutI CAGTG 1 cut(s) 1419
Cac8I GCNNGC 2 cut(s) 507, 876
CaiI CAGNNNCTG 1 cut(s) 1271
CfoI GCGC 2 cut(s) 505, 668
Cfr10I RCCGGY 3 cut(s) 11, 56, 1351
Cfr13I GGNCC 5 cut(s) 736, 1049, 1175, 1505, 1506
CseI GACGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 448
CspAI ACCGGT 1 cut(s) 11
CviAII CATG 4 cut(s) 215, 996, 1122, 1252
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 9 cut(s) 283, 522, 529, 695, 732, 777, 816, 1272, 1383
DpnI GATC 2 cut(s) 281, 1444
DpnII GATC 2 cut(s) 279, 1442
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 5 cut(s) 130, 459, 485, 817, 1323
EarI CTCTTC 5 cut(s) 130, 459, 485, 817, 1323
Eco130I CCWWGG 3 cut(s) 214, 424, 987
Eco24I GRGCYC 1 cut(s) 1509
Eco31I GGTCTC 3 cut(s) 998, 1124, 1383
Eco47I GGWCC 3 cut(s) 736, 1049, 1175
Eco57I CTGAAG 1 cut(s) 609
EcoO109I RGGNCCY 1 cut(s) 736
EcoRII CCWGG 2 cut(s) 685, 1113
EcoT14I CCWWGG 3 cut(s) 214, 424, 987
EcoT22I ATGCAT 1 cut(s) 997
EcoT38I GRGCYC 1 cut(s) 1509
ErhI CCWWGG 3 cut(s) 214, 424, 987
FaeI CATG 4 cut(s) 218, 999, 1125, 1255
FalI AAGNNNNNCTT 2 cut(s) 1320, 1352
FaqI GGGAC 2 cut(s) 668, 1188
FatI CATG 4 cut(s) 214, 995, 1121, 1251
FblI GTMKAC 1 cut(s) 496
Fnu4HI GCNGC 6 cut(s) 208, 260, 271, 473, 669, 1307
FokI GGATG 5 cut(s) 350, 797, 989, 1004, 1073
FriOI GRGCYC 1 cut(s) 1509
Fsp4HI GCNGC 6 cut(s) 208, 260, 271, 473, 669, 1307
FspBI CTAG 2 cut(s) 792, 929
GlaI GCGC 2 cut(s) 504, 667
GluI GCNGC 6 cut(s) 208, 260, 271, 473, 669, 1307
GsaI CCCAGC 1 cut(s) 513
GsuI CTGGAG 2 cut(s) 431, 627
HaeIII GGCC 4 cut(s) 60, 98, 219, 1507
HapII CCGG 4 cut(s) 12, 57, 237, 1352
HgaI GACGC 1 cut(s) 199
HhaI GCGC 2 cut(s) 505, 668
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 4 cut(s) 218, 999, 1125, 1255
Hin6I GCGC 2 cut(s) 503, 666
HinP1I GCGC 2 cut(s) 503, 666
HindIII AAGCTT 1 cut(s) 1334
HinfI GANTC 9 cut(s) 240, 296, 514, 869, 1106, 1201, 1208, 1268, 1274
HpaII CCGG 4 cut(s) 12, 57, 237, 1352
HphI GGTGA 5 cut(s) 15, 63, 127, 371, 1334
Hpy166II GTNNAC 1 cut(s) 497
Hpy188III TCNNGA 4 cut(s) 237, 717, 939, 1205
Hpy8I GTNNAC 1 cut(s) 497
Hpy99I CGWCG 2 cut(s) 359, 368
HpyAV CCTTC 8 cut(s) 36, 109, 431, 641, 1145, 1411, 1465, 1522
HpyCH4III ACNGT 4 cut(s) 359, 1399, 1414, 1435
HpyCH4IV ACGT 1 cut(s) 377
HpyCH4V TGCA 5 cut(s) 33, 747, 788, 995, 1081
HpyF10VI GCNNNNNNNGC 3 cut(s) 207, 216, 1520
HpyF3I CTNAG 9 cut(s) 283, 522, 529, 695, 732, 777, 816, 1272, 1383
HpySE526I ACGT 1 cut(s) 377
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 4 cut(s) 218, 999, 1125, 1255
HspAI GCGC 2 cut(s) 503, 666
Kpn2I TCCGGA 1 cut(s) 236
Kzo9I GATC 2 cut(s) 279, 1442
LmnI GCTCC 3 cut(s) 135, 925, 1039
Lsp1109I GCAGC 4 cut(s) 271, 459, 680, 1318
LweI GCATC 5 cut(s) 122, 775, 982, 1054, 1180
MaeI CTAG 2 cut(s) 792, 929
MaeII ACGT 1 cut(s) 377
MaeIII GTNAC 2 cut(s) 359, 1094
MalI GATC 2 cut(s) 281, 1444
MboI GATC 2 cut(s) 279, 1442
MfeI CAATTG 1 cut(s) 459
MflI RGATCY 2 cut(s) 279, 1442
MhlI GDGCHC 1 cut(s) 1509
MlsI TGGCCA 1 cut(s) 219
MluNI TGGCCA 1 cut(s) 219
MlyI GAGTC 4 cut(s) 249, 290, 1202, 1283
MmeI TCCRAC 2 cut(s) 294, 1027
Mox20I TGGCCA 1 cut(s) 219
Mph1103I ATGCAT 1 cut(s) 997
MroI TCCGGA 1 cut(s) 236
MroXI GAANNNNTTC 1 cut(s) 597
MscI TGGCCA 1 cut(s) 219
MseI TTAA 5 cut(s) 549, 771, 1259, 1457, 1482
Msp20I TGGCCA 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 605
MspI CCGG 4 cut(s) 12, 57, 237, 1352
MspR9I CCNGG 2 cut(s) 687, 1115
MunI CAATTG 1 cut(s) 459
MvaI CCWGG 2 cut(s) 687, 1115
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 3 cut(s) 207, 216, 1520
NcoI CCATGG 1 cut(s) 214
NdeII GATC 2 cut(s) 279, 1442
NlaIII CATG 4 cut(s) 218, 999, 1125, 1255
NlaIV GGNNCC 6 cut(s) 235, 600, 738, 1176, 1422, 1507
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 2 cut(s) 359, 1094
NsiI ATGCAT 1 cut(s) 997
PcsI WCGNNNNNNNCGW 2 cut(s) 363, 383
PdmI GAANNNNTTC 1 cut(s) 597
PfeI GAWTC 5 cut(s) 514, 869, 1106, 1201, 1268
PinAI ACCGGT 1 cut(s) 11
PkrI GCNGC 6 cut(s) 209, 261, 272, 474, 670, 1308
PleI GAGTC 4 cut(s) 248, 290, 1202, 1282
PpsI GAGTC 4 cut(s) 248, 290, 1202, 1282
PpuMI RGGWCCY 1 cut(s) 736
Psp5II RGGWCCY 1 cut(s) 736
Psp6I CCWGG 2 cut(s) 685, 1113
PspFI CCCAGC 1 cut(s) 509
PspGI CCWGG 2 cut(s) 685, 1113
PspN4I GGNNCC 6 cut(s) 235, 600, 738, 1176, 1422, 1507
PspOMI GGGCCC 1 cut(s) 1505
PspPI GGNCC 5 cut(s) 736, 1049, 1175, 1505, 1506
PspPPI RGGWCCY 1 cut(s) 736
PstNI CAGNNNCTG 1 cut(s) 1271
PsuI RGATCY 2 cut(s) 279, 1442
PvuII CAGCTG 1 cut(s) 605
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
SaqAI TTAA 5 cut(s) 549, 771, 1259, 1457, 1482
SatI GCNGC 6 cut(s) 208, 260, 271, 473, 669, 1307
Sau3AI GATC 2 cut(s) 279, 1442
Sau96I GGNCC 5 cut(s) 736, 1049, 1175, 1505, 1506
SchI GAGTC 4 cut(s) 249, 290, 1202, 1283
ScrFI CCNGG 2 cut(s) 687, 1115
SduI GDGCHC 1 cut(s) 1509
SfaNI GCATC 5 cut(s) 122, 775, 982, 1054, 1180
SinI GGWCC 3 cut(s) 736, 1049, 1175
SsiI CCGC 3 cut(s) 207, 270, 710
SspMI CTAG 2 cut(s) 792, 929
StyD4I CCNGG 2 cut(s) 685, 1113
StyI CCWWGG 3 cut(s) 214, 424, 987
TaaI ACNGT 4 cut(s) 359, 1399, 1414, 1435
TaiI ACGT 1 cut(s) 380
TaqI TCGA 2 cut(s) 477, 925
TauI GCSGC 2 cut(s) 210, 273
TfiI GAWTC 5 cut(s) 514, 869, 1106, 1201, 1268
Tru1I TTAA 5 cut(s) 549, 771, 1259, 1457, 1482
Tru9I TTAA 5 cut(s) 549, 771, 1259, 1457, 1482
TscAI CASTG 1 cut(s) 1419
TseFI GTSAC 2 cut(s) 359, 1094
TseI GCWGC 4 cut(s) 259, 472, 668, 1306
Tsp45I GTSAC 2 cut(s) 359, 1094
TspDTI ATGAA 6 cut(s) 413, 755, 1032, 1158, 1164, 1281
TspRI CASTG 1 cut(s) 1419
VpaK11BI GGWCC 3 cut(s) 736, 1049, 1175
XapI RAATTY 1 cut(s) 837
XcmI CCANNNNNNNNNTGG 3 cut(s) 227, 1201, 1516
XmiI GTMKAC 1 cut(s) 496
XmnI GAANNNNTTC 1 cut(s) 597
XspI CTAG 2 cut(s) 792, 929
Zsp2I ATGCAT 1 cut(s) 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.