Rmu_co8304031.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8304031.1
OG0012534
Physical Location & Seq
Reverse (-)
1 .. 843
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8304031.1_g000001.1.cds

Sequence Viewer

Length: 491 bp
atggacgacgactccgatgaagaggacgacgatgacggtgacgtggacggcggagatgaggagctggaattggacggtgaggatgacgaaggcgaaggtctgttggtgccgtttggggagatgaagaagtggctggagaagaagccgcgtggcttcggcgaaggcagagtctacgacactccgattgaagaccaactgctcgaagaaatacaggttgagacttccactaagctccaaaacgacgccgtaaaggccaatcttaaacctcagaagaacacagctgatgaggtggttgttccggccgggtttcgggtgagggtgacgaacctgccgaagaagaagaatgtgcaccgggatttgactgcggcgtttaagctggttccgggtttgctgagcataaacccagctgtgactggaaacaagaagaccaaggaccccatttgcaagggttttgcttttgtgcatttcaagactgagaaggatgcagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

163

Amino Acids

18.03

Weight (kDa)

4.53

Isoelectric Point (pI)

26.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70200
fragaria_vesca FvH4_4g34980 FvH4_5g29371
malus_domestica MD16G1087500.v1.1
prunus_persica Prupe.1G259500_v2.0.a1
pyrus_communis pycom13g07510 pycom16g07510
rosa_chinensis RchiOBHm_Chr4g0444501
rosa_laevigata RLG00000005829
rosa_multiflora Rmu_co8304031.1_g000001 Rmu_sc0003839.1_g000008 Rmu_sc0035747.1_g000002
rosa_roxburghii Rroxscaffold_5G00384980
rosa_rugosa Rorug04G0353200
rosa_samantha Rh4AG413400 Rh4BG424900 Rh4CG439500 Rh4DG420400
rosa_wichuraiana Rw4G035510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 336
AccB1I GGYRCC 1 cut(s) 106
AccI GTMKAC 1 cut(s) 171
AccII CGCG 1 cut(s) 148
AciI CCGC 3 cut(s) 51, 146, 365
AcoI YGGCCR 1 cut(s) 300
AcyI GRCGYC 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 309
AgsI TTSAA 2 cut(s) 188, 469
AjiI CACGTC 1 cut(s) 43
AluBI AGCT 6 cut(s) 64, 232, 281, 376, 407, 488
AluI AGCT 6 cut(s) 64, 232, 281, 376, 407, 488
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 1 cut(s) 212
Alw44I GTGCAC 1 cut(s) 347
AoxI GGCC 2 cut(s) 252, 300
ApaLI GTGCAC 1 cut(s) 347
ApeKI GCWGC 1 cut(s) 485
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
AspS9I GGNCC 1 cut(s) 433
AsuC2I CCSGG 3 cut(s) 304, 353, 384
AsuHPI GGTGA 4 cut(s) 50, 89, 325, 331
AvaII GGWCC 1 cut(s) 433
BaeGI GKGCMC 1 cut(s) 351
BanI GGYRCC 1 cut(s) 106
BbsI GAAGAC 2 cut(s) 195, 431
Bbv12I GWGCWC 1 cut(s) 351
BceAI ACGGC 3 cut(s) 64, 94, 230
BcnI CCSGG 3 cut(s) 304, 353, 384
BcoDI GTCTC 1 cut(s) 212
BfaI CTAG 1 cut(s) 489
BfuAI ACCTGC 1 cut(s) 336
BglI GCCNNNNNGGC 1 cut(s) 251
BisI GCNGC 3 cut(s) 146, 366, 486
BlpI GCTNAGC 1 cut(s) 392
BlsI GCNGC 3 cut(s) 147, 367, 487
Bme1390I CCNGG 3 cut(s) 304, 353, 384
Bme18I GGWCC 1 cut(s) 433
BmgBI CACGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 433
BmiI GGNNCC 3 cut(s) 108, 381, 435
BmrFI CCNGG 3 cut(s) 304, 353, 384
BmsI GCATC 1 cut(s) 472
BpiI GAAGAC 2 cut(s) 195, 431
BpmI CTGGAG 1 cut(s) 155
Bpu1102I GCTNAGC 1 cut(s) 392
BpuMI CCSGG 3 cut(s) 304, 353, 384
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 429
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 418
BseDI CCNNGG 1 cut(s) 429
BseGI GGATG 2 cut(s) 88, 487
BseLI CCNNNNNNNGG 1 cut(s) 309
BseMII CTCAG 3 cut(s) 281, 383, 465
BseNI ACTGG 1 cut(s) 418
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 351
BseX3I CGGCCG 1 cut(s) 300
BseYI CCCAGC 1 cut(s) 403
Bsh1236I CGCG 1 cut(s) 148
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 2 cut(s) 254, 302
BshNI GGYRCC 1 cut(s) 106
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 4 cut(s) 299, 303, 352, 383
BslI CCNNNNNNNGG 1 cut(s) 309
BsmAI GTCTC 1 cut(s) 212
BsnI GGCC 2 cut(s) 254, 302
Bsp1286I GDGCHC 1 cut(s) 351
Bsp1720I GCTNAGC 1 cut(s) 392
BspACI CCGC 3 cut(s) 51, 146, 365
BspANI GGCC 2 cut(s) 254, 302
BspCNI CTCAG 3 cut(s) 280, 384, 466
BspFNI CGCG 1 cut(s) 148
BspLI GGNNCC 3 cut(s) 108, 381, 435
BspMI ACCTGC 1 cut(s) 336
BspT107I GGYRCC 1 cut(s) 106
BsrI ACTGG 1 cut(s) 418
BssECI CCNNGG 1 cut(s) 429
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 429
Bst4CI ACNGT 2 cut(s) 38, 77
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 1 cut(s) 243
BstDEI CTNAG 4 cut(s) 228, 267, 392, 474
BstF5I GGATG 2 cut(s) 88, 487
BstFNI CGCG 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 212
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstSCI CCNGG 3 cut(s) 302, 351, 382
BstSLI GKGCMC 1 cut(s) 351
BstUI CGCG 1 cut(s) 148
BstV2I GAAGAC 2 cut(s) 195, 431
BstZI CGGCCG 1 cut(s) 300
BsuRI GGCC 2 cut(s) 254, 302
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 2 cut(s) 88, 487
BveI ACCTGC 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 433
CseI GACGC 1 cut(s) 251
DdeI CTNAG 4 cut(s) 228, 267, 392, 474
EaeI YGGCCR 1 cut(s) 300
EagI CGGCCG 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
EciI GGCGGA 1 cut(s) 66
EclXI CGGCCG 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 433
Eco52I CGGCCG 1 cut(s) 300
EcoO109I RGGNCCY 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 429
FaiI YATR 1 cut(s) 398
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 3 cut(s) 146, 366, 486
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 3 cut(s) 146, 366, 486
FspBI CTAG 1 cut(s) 489
GluI GCNGC 3 cut(s) 146, 366, 486
GsaI CCCAGC 1 cut(s) 407
GsuI CTGGAG 1 cut(s) 155
HaeIII GGCC 2 cut(s) 254, 302
HapII CCGG 4 cut(s) 299, 303, 352, 383
HgaI GACGC 1 cut(s) 251
Hin1I GRCGYC 1 cut(s) 243
HinfI GANTC 2 cut(s) 11, 168
HpaII CCGG 4 cut(s) 299, 303, 352, 383
HphI GGTGA 4 cut(s) 50, 89, 325, 331
Hpy166II GTNNAC 3 cut(s) 46, 172, 349
Hpy188I TCNGA 3 cut(s) 16, 183, 270
Hpy188III TCNNGA 1 cut(s) 469
Hpy8I GTNNAC 3 cut(s) 46, 172, 349
Hpy99I CGWCG 3 cut(s) 11, 32, 245
HpyAV CCTTC 4 cut(s) 83, 89, 155, 472
HpyCH4III ACNGT 2 cut(s) 38, 77
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 4 cut(s) 349, 444, 463, 485
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 4 cut(s) 228, 267, 392, 474
HpySE526I ACGT 1 cut(s) 42
Hsp92I GRCGYC 1 cut(s) 243
LmnI GCTCC 2 cut(s) 61, 237
LweI GCATC 1 cut(s) 472
MaeI CTAG 1 cut(s) 489
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 3 cut(s) 38, 319, 409
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 1 cut(s) 68
MlyI GAGTC 2 cut(s) 5, 177
MnlI CCTC 6 cut(s) 16, 52, 73, 276, 280, 309
MseI TTAA 2 cut(s) 261, 372
MspA1I CMGCKG 2 cut(s) 281, 407
MspI CCGG 4 cut(s) 299, 303, 352, 383
MspR9I CCNGG 3 cut(s) 304, 353, 384
MvnI CGCG 1 cut(s) 148
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 3 cut(s) 304, 353, 384
NlaIV GGNNCC 3 cut(s) 108, 381, 435
NmuCI GTSAC 3 cut(s) 38, 319, 409
PcsI WCGNNNNNNNCGW 2 cut(s) 12, 329
PkrI GCNGC 3 cut(s) 147, 367, 487
PleI GAGTC 2 cut(s) 5, 176
PpsI GAGTC 2 cut(s) 5, 176
PpuMI RGGWCCY 1 cut(s) 433
Psp5II RGGWCCY 1 cut(s) 433
PspFI CCCAGC 1 cut(s) 403
PspN4I GGNNCC 3 cut(s) 108, 381, 435
PspPI GGNCC 1 cut(s) 433
PspPPI RGGWCCY 1 cut(s) 433
PvuII CAGCTG 2 cut(s) 281, 407
SaqAI TTAA 2 cut(s) 261, 372
SatI GCNGC 3 cut(s) 146, 366, 486
Sau96I GGNCC 1 cut(s) 433
SchI GAGTC 2 cut(s) 5, 177
ScrFI CCNGG 3 cut(s) 304, 353, 384
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 1 cut(s) 472
SinI GGWCC 1 cut(s) 433
Sse9I AATT 1 cut(s) 68
SsiI CCGC 3 cut(s) 51, 146, 365
SspMI CTAG 1 cut(s) 489
StyD4I CCNGG 3 cut(s) 302, 351, 382
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 2 cut(s) 38, 77
TaiI ACGT 1 cut(s) 45
TaqI TCGA 1 cut(s) 201
TasI AATT 1 cut(s) 68
TauI GCSGC 2 cut(s) 148, 368
Tru1I TTAA 2 cut(s) 261, 372
Tru9I TTAA 2 cut(s) 261, 372
TseFI GTSAC 3 cut(s) 38, 319, 409
TseI GCWGC 1 cut(s) 485
Tsp45I GTSAC 3 cut(s) 38, 319, 409
TspDTI ATGAA 2 cut(s) 33, 137
VneI GTGCAC 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 433
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.