Rmu_sc0003839.1_g000008

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003839.1
Physical Location & Seq
Reverse (-)
32242 .. 34468
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003839.1_g000008.1.cds

Sequence Viewer

Length: 1671 bp
atgataagcaccgcaaggcttccaccttcctcctccgctctcttcaccactccttctctctccttctccttcaaaacccaattacgtttcgcttccacttcttcactccccactgccattttcaaacacaaccgcttcctctcctccgttcacctcacgcgcctccgcttccccgccgtccacgcccagaagagccgcaagttcggactgcagtccgtgcggaagaagcggaaagggggcaacaagctcttggcaatggacgacgactccgatgaagaggacgacgatgacggtgacgtggacggcggagatgaggagctggaattggacggtgaggatgacgaaggcgaaggtctgttggtgccgtttggggagatgaagaagtggctggagaagaagccgcgtggcttcggcgaaggcagagtctacgacactccgattgaagaccaactgctcgaagaaatacaggttgagacttccactaagctccaaaacgacgccgtaaaggccaatcttaaaactcagaagaacacagctgatgaggtggttgttccggccgggtttcgggtgagggtgacgaacctgccgaagaagaagaatgtgcaccgggatttgactgcggcgtttaagctggttccgggtttgctgagcataaacccagctgtgactggaaacaagaagaccaaggaccccatttgcaagggttttgcttttgtgcatttcaagactgagaaggatgcagctaggtttgtggaaacattttcttcgcagagtattacatttgggaaagttcagaagcagataaaatgcgaggtggtaacttcaccggattctgatgtggaacaatcaaaatctgctcctcgaatagctgctccgcgactaaatgctccgcgactaaatgctcttaaacccgtaacagttaactatactgtccgtggtcctaaaccagcaacagatcctgctactaaaacctcaaccaataagtctactgattcccaactgactgtttctgtatctggagaccagaaagcggattctgaattggataattcttccctggacacattggaggagactgtatctgatgaatatgatggctctgatgttgaaatccttgagccagaactggaagatttcatggtgaatcttaaaaattcaggagactatcttgatgctcaactgacagctgcatttggagaccagaaggtggattctgacttggatgatgttacgctggacacattggatgagactatatctgatgatgaatatgatggccctgatgttgtgatccttggaccagaaccggaagatttcaaggagaatctgcaaacctccactgtgtcagacctaaatggtggagacagcagtatcatagaattaacgacagaatccgagtcttctgcagattcgtcttcctcaaagcagttgattgctaagagtaaagaagagaaggttcctcgcaaaaagcaagctgtgaaagggaaagaagaagggactcctaagaagaagttaaccgtgaaagaaaaagcaccaaaagcaccaaaaattccaaagttggtcgtccccgggtcttccaagaggttaagggtcaaggagaaggctgtgcttagtgatgtgttctcgaaatatgggttaaacccagctttggcttcaaatgaagatagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

556

Amino Acids

60.79

Weight (kDa)

5.12

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012534)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 591
AccB1I GGYRCC 1 cut(s) 361
AccB7I CCANNNNNTGG 1 cut(s) 1207
AccBSI CCGCTC 1 cut(s) 38
AccI GTMKAC 2 cut(s) 426, 986
AccII CGCG 4 cut(s) 160, 403, 877, 892
AclWI GGATC 2 cut(s) 950, 1285
AcoI YGGCCR 1 cut(s) 555
AcsI RAATTY 2 cut(s) 1153, 1548
AcyI GRCGYC 1 cut(s) 498
AfiI CCNNNNNNNGG 4 cut(s) 564, 1030, 1207, 1648
AgsI TTSAA 7 cut(s) 73, 124, 443, 724, 1109, 1318, 1656
AjiI CACGTC 1 cut(s) 298
AjnI CCWGG 1 cut(s) 1056
Alw21I GWGCWC 1 cut(s) 606
Alw26I GTCTC 7 cut(s) 467, 1014, 1067, 1155, 1191, 1244, 1356
Alw44I GTGCAC 1 cut(s) 602
AlwI GGATC 2 cut(s) 950, 1285
AlwNI CAGNNNCTG 1 cut(s) 959
Ama87I CYCGRG 1 cut(s) 1568
AoxI GGCC 3 cut(s) 507, 555, 1276
ApaLI GTGCAC 1 cut(s) 602
ApeKI GCWGC 3 cut(s) 740, 869, 1187
ApoI RAATTY 2 cut(s) 1153, 1548
ArsI GACNNNNNNTTYG 2 cut(s) 408, 440
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 4 cut(s) 688, 938, 1277, 1298
AsuC2I CCSGG 5 cut(s) 559, 608, 639, 1569, 1570
AsuHPI GGTGA 8 cut(s) 37, 143, 305, 344, 580, 586, 816, 1153
AvaI CYCGRG 1 cut(s) 1568
AvaII GGWCC 3 cut(s) 688, 938, 1298
BaeGI GKGCMC 1 cut(s) 606
BaeI ACNNNNGTAYC 2 cut(s) 1354, 1387
BanI GGYRCC 1 cut(s) 361
BbsI GAAGAC 5 cut(s) 450, 686, 1392, 1407, 1566
Bbv12I GWGCWC 1 cut(s) 606
BbvI GCAGC 3 cut(s) 752, 856, 1174
BccI CCATC 2 cut(s) 1088, 1268
BceAI ACGGC 4 cut(s) 161, 319, 349, 485
BcgI CGANNNNNNTGC 2 cut(s) 1385, 1419
BciT130I CCWGG 1 cut(s) 1058
BcnI CCSGG 5 cut(s) 559, 608, 639, 1569, 1570
BcoDI GTCTC 7 cut(s) 467, 1014, 1067, 1155, 1191, 1244, 1356
BfaI CTAG 1 cut(s) 744
BfmI CTRYAG 2 cut(s) 209, 1404
BfuAI ACCTGC 1 cut(s) 591
BglI GCCNNNNNGGC 1 cut(s) 506
BisI GCNGC 6 cut(s) 196, 401, 621, 741, 870, 1188
BlpI GCTNAGC 1 cut(s) 647
BlsI GCNGC 6 cut(s) 197, 402, 622, 742, 871, 1189
Bme1390I CCNGG 6 cut(s) 559, 608, 639, 1058, 1569, 1570
Bme18I GGWCC 3 cut(s) 688, 938, 1298
BmeT110I CYCGRG 1 cut(s) 1568
BmgBI CACGTC 1 cut(s) 298
BmgT120I GGNCC 4 cut(s) 688, 938, 1277, 1298
BmiI GGNNCC 4 cut(s) 363, 636, 690, 1458
BmrFI CCNGG 6 cut(s) 559, 608, 639, 1058, 1569, 1570
BmsI GCATC 2 cut(s) 727, 1162
BoxI GACNNNNGTC 1 cut(s) 211
BpiI GAAGAC 5 cut(s) 450, 686, 1392, 1407, 1566
BpmI CTGGAG 2 cut(s) 410, 1038
Bpu1102I GCTNAGC 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 1136
BpuMI CCSGG 5 cut(s) 559, 608, 639, 1569, 1570
BsaHI GRCGYC 1 cut(s) 498
BsaI GGTCTC 2 cut(s) 1014, 1191
BsaJI CCNNGG 6 cut(s) 684, 934, 1056, 1294, 1567, 1568
BsaWI WCCGGW 2 cut(s) 826, 1306
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 4 cut(s) 564, 1030, 1207, 1648
Bse1I ACTGG 2 cut(s) 673, 1131
Bse3DI GCAATG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 1058
BseDI CCNNGG 6 cut(s) 684, 934, 1056, 1294, 1567, 1568
BseGI GGATG 4 cut(s) 343, 742, 1228, 1252
BseLI CCNNNNNNNGG 4 cut(s) 564, 1030, 1207, 1648
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 3 cut(s) 536, 638, 720
BseNI ACTGG 2 cut(s) 673, 1131
BseRI GAGGAG 5 cut(s) 22, 133, 329, 849, 1085
BseSI GKGCMC 1 cut(s) 606
BseX3I CGGCCG 1 cut(s) 555
BseXI GCAGC 3 cut(s) 752, 856, 1174
BseYI CCCAGC 2 cut(s) 658, 1642
Bsh1236I CGCG 4 cut(s) 160, 403, 877, 892
Bsh1285I CGRYCG 1 cut(s) 558
BshFI GGCC 3 cut(s) 509, 557, 1278
BshNI GGYRCC 1 cut(s) 361
BsiEI CGRYCG 1 cut(s) 558
BsiHKAI GWGCWC 1 cut(s) 606
BsiHKCI CYCGRG 1 cut(s) 1568
BsiSI CCGG 7 cut(s) 554, 558, 607, 638, 827, 1307, 1569
BslFI GGGAC 2 cut(s) 1510, 1550
BslI CCNNNNNNNGG 4 cut(s) 564, 1030, 1207, 1648
BsmAI GTCTC 7 cut(s) 467, 1014, 1067, 1155, 1191, 1244, 1356
BsmFI GGGAC 2 cut(s) 1510, 1550
BsnI GGCC 3 cut(s) 509, 557, 1278
Bso31I GGTCTC 2 cut(s) 1014, 1191
BsoBI CYCGRG 1 cut(s) 1568
Bsp1286I GDGCHC 1 cut(s) 606
Bsp143I GATC 2 cut(s) 955, 1290
Bsp1720I GCTNAGC 1 cut(s) 647
BspANI GGCC 3 cut(s) 509, 557, 1278
BspCNI CTCAG 3 cut(s) 535, 639, 721
BspFNI CGCG 4 cut(s) 160, 403, 877, 892
BspLI GGNNCC 4 cut(s) 363, 636, 690, 1458
BspMAI CTGCAG 2 cut(s) 213, 1408
BspMI ACCTGC 1 cut(s) 591
BspPI GGATC 2 cut(s) 950, 1285
BspQI GCTCTTC 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 361
BspTNI GGTCTC 2 cut(s) 1014, 1191
BsrBI CCGCTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 2 cut(s) 673, 1131
BssECI CCNNGG 6 cut(s) 684, 934, 1056, 1294, 1567, 1568
BssMI GATC 2 cut(s) 955, 1290
BssNI GRCGYC 1 cut(s) 498
BssT1I CCWWGG 2 cut(s) 684, 1294
Bst2UI CCWGG 1 cut(s) 1058
Bst4CI ACNGT 8 cut(s) 293, 332, 919, 931, 1006, 1078, 1342, 1519
Bst6I CTCTTC 4 cut(s) 47, 185, 270, 1443
BstACI GRCGYC 1 cut(s) 498
BstAPI GCANNNNNTGC 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 1473
BstDEI CTNAG 7 cut(s) 483, 522, 647, 729, 1437, 1503, 1610
BstDSI CCRYGG 1 cut(s) 934
BstF5I GGATG 4 cut(s) 343, 742, 1228, 1252
BstFNI CGCG 4 cut(s) 160, 403, 877, 892
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 2 cut(s) 958, 1293
BstMAI GTCTC 7 cut(s) 467, 1014, 1067, 1155, 1191, 1244, 1356
BstMBI GATC 2 cut(s) 955, 1290
BstMCI CGRYCG 1 cut(s) 558
BstMWI GCNNNNNNNGC 5 cut(s) 182, 217, 226, 506, 1538
BstNI CCWGG 1 cut(s) 1058
BstPAI GACNNNNGTC 1 cut(s) 211
BstSCI CCNGG 6 cut(s) 557, 606, 637, 1056, 1567, 1568
BstSFI CTRYAG 2 cut(s) 209, 1404
BstSLI GKGCMC 1 cut(s) 606
BstUI CGCG 4 cut(s) 160, 403, 877, 892
BstV1I GCAGC 3 cut(s) 752, 856, 1174
BstV2I GAAGAC 5 cut(s) 450, 686, 1392, 1407, 1566
BstX2I RGATCY 1 cut(s) 955
BstYI RGATCY 1 cut(s) 955
BstZI CGGCCG 1 cut(s) 555
BsuRI GGCC 3 cut(s) 509, 557, 1278
BtgI CCRYGG 1 cut(s) 934
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 4 cut(s) 343, 742, 1228, 1252
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 111, 1338
BveI ACCTGC 1 cut(s) 591
Cac8I GCNNGC 1 cut(s) 1473
CaiI CAGNNNCTG 1 cut(s) 959
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 4 cut(s) 688, 938, 1277, 1298
Cfr9I CCCGGG 1 cut(s) 1568
CseI GACGC 1 cut(s) 506
CviAII CATG 1 cut(s) 1138
DdeI CTNAG 7 cut(s) 483, 522, 647, 729, 1437, 1503, 1610
DpnI GATC 2 cut(s) 957, 1292
DpnII GATC 2 cut(s) 955, 1290
EaeI YGGCCR 1 cut(s) 555
EagI CGGCCG 1 cut(s) 555
Eam1104I CTCTTC 4 cut(s) 47, 185, 270, 1443
EarI CTCTTC 4 cut(s) 47, 185, 270, 1443
EciI GGCGGA 1 cut(s) 321
EclXI CGGCCG 1 cut(s) 555
Eco130I CCWWGG 2 cut(s) 684, 1294
Eco31I GGTCTC 2 cut(s) 1014, 1191
Eco47I GGWCC 3 cut(s) 688, 938, 1298
Eco52I CGGCCG 1 cut(s) 555
Eco88I CYCGRG 1 cut(s) 1568
EcoO109I RGGNCCY 1 cut(s) 688
EcoRII CCWGG 1 cut(s) 1056
EcoT14I CCWWGG 2 cut(s) 684, 1294
ErhI CCWWGG 2 cut(s) 684, 1294
FaeI CATG 1 cut(s) 1141
FaiI YATR 8 cut(s) 653, 927, 1092, 1139, 1256, 1272, 1376, 1632
FaqI GGGAC 2 cut(s) 1510, 1550
FatI CATG 1 cut(s) 1137
FauI CCCGC 1 cut(s) 181
FblI GTMKAC 2 cut(s) 426, 986
Fnu4HI GCNGC 6 cut(s) 196, 401, 621, 741, 870, 1188
FokI GGATG 4 cut(s) 350, 749, 1235, 1259
Fsp4HI GCNGC 6 cut(s) 196, 401, 621, 741, 870, 1188
FspBI CTAG 1 cut(s) 744
GlaI GCGC 1 cut(s) 161
GluI GCNGC 6 cut(s) 196, 401, 621, 741, 870, 1188
GsaI CCCAGC 2 cut(s) 662, 1646
GsuI CTGGAG 2 cut(s) 410, 1038
HaeIII GGCC 3 cut(s) 509, 557, 1278
HapII CCGG 7 cut(s) 554, 558, 607, 638, 827, 1307, 1569
HgaI GACGC 1 cut(s) 506
HhaI GCGC 1 cut(s) 162
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 1 cut(s) 1141
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 2 cut(s) 922, 1515
HindII GTYRAC 2 cut(s) 922, 1515
HpaI GTTAAC 2 cut(s) 922, 1515
HpaII CCGG 7 cut(s) 554, 558, 607, 638, 827, 1307, 1569
HphI GGTGA 8 cut(s) 37, 143, 305, 344, 580, 586, 816, 1153
Hpy166II GTNNAC 8 cut(s) 151, 181, 301, 427, 604, 922, 987, 1515
Hpy188III TCNNGA 5 cut(s) 724, 1017, 1158, 1169, 1624
Hpy8I GTNNAC 8 cut(s) 151, 181, 301, 427, 604, 922, 987, 1515
Hpy99I CGWCG 3 cut(s) 266, 287, 500
HpyCH4III ACNGT 8 cut(s) 293, 332, 919, 931, 1006, 1078, 1342, 1519
HpyCH4IV ACGT 2 cut(s) 85, 297
HpyCH4V TGCA 8 cut(s) 211, 604, 699, 718, 740, 1190, 1330, 1406
HpyF10VI GCNNNNNNNGC 5 cut(s) 182, 217, 226, 506, 1538
HpyF3I CTNAG 7 cut(s) 483, 522, 647, 729, 1437, 1503, 1610
HpySE526I ACGT 2 cut(s) 85, 297
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 1 cut(s) 1141
HspAI GCGC 1 cut(s) 160
KspAI GTTAAC 2 cut(s) 922, 1515
Kzo9I GATC 2 cut(s) 955, 1290
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 5 cut(s) 316, 492, 862, 877, 892
Lsp1109I GCAGC 3 cut(s) 752, 856, 1174
LweI GCATC 2 cut(s) 727, 1162
MaeI CTAG 1 cut(s) 744
MaeII ACGT 2 cut(s) 85, 297
MaeIII GTNAC 6 cut(s) 293, 574, 664, 817, 913, 1228
MalI GATC 2 cut(s) 957, 1292
MbiI CCGCTC 1 cut(s) 38
MboI GATC 2 cut(s) 955, 1290
MflI RGATCY 1 cut(s) 955
MhlI GDGCHC 1 cut(s) 606
MluCI AATT 7 cut(s) 80, 323, 1040, 1048, 1153, 1379, 1548
MlyI GAGTC 4 cut(s) 260, 432, 1406, 1492
MseI TTAA 9 cut(s) 516, 627, 906, 921, 1149, 1382, 1514, 1586, 1637
MspA1I CMGCKG 3 cut(s) 536, 662, 1187
MspI CCGG 7 cut(s) 554, 558, 607, 638, 827, 1307, 1569
MspR9I CCNGG 6 cut(s) 559, 608, 639, 1058, 1569, 1570
MvaI CCWGG 1 cut(s) 1058
MvnI CGCG 4 cut(s) 160, 403, 877, 892
MwoI GCNNNNNNNGC 5 cut(s) 182, 217, 226, 506, 1538
NciI CCSGG 5 cut(s) 559, 608, 639, 1569, 1570
NdeII GATC 2 cut(s) 955, 1290
NlaIII CATG 1 cut(s) 1141
NlaIV GGNNCC 4 cut(s) 363, 636, 690, 1458
NmuCI GTSAC 3 cut(s) 293, 574, 664
PciSI GCTCTTC 1 cut(s) 185
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 584
PfeI GAWTC 8 cut(s) 830, 992, 1034, 1144, 1211, 1324, 1391, 1409
PflMI CCANNNNNTGG 1 cut(s) 1207
PkrI GCNGC 6 cut(s) 197, 402, 622, 742, 871, 1189
PleI GAGTC 4 cut(s) 260, 431, 1405, 1492
PpsI GAGTC 4 cut(s) 260, 431, 1405, 1492
PpuMI RGGWCCY 1 cut(s) 688
PshAI GACNNNNGTC 1 cut(s) 211
Psp5II RGGWCCY 1 cut(s) 688
Psp6I CCWGG 1 cut(s) 1056
PspFI CCCAGC 2 cut(s) 658, 1642
PspGI CCWGG 1 cut(s) 1056
PspN4I GGNNCC 4 cut(s) 363, 636, 690, 1458
PspPI GGNCC 4 cut(s) 688, 938, 1277, 1298
PspPPI RGGWCCY 1 cut(s) 688
PstI CTGCAG 2 cut(s) 213, 1408
PstNI CAGNNNCTG 1 cut(s) 959
PsuI RGATCY 1 cut(s) 955
PvuII CAGCTG 3 cut(s) 536, 662, 1187
SapI GCTCTTC 1 cut(s) 185
SaqAI TTAA 9 cut(s) 516, 627, 906, 921, 1149, 1382, 1514, 1586, 1637
SatI GCNGC 6 cut(s) 196, 401, 621, 741, 870, 1188
Sau3AI GATC 2 cut(s) 955, 1290
Sau96I GGNCC 4 cut(s) 688, 938, 1277, 1298
SchI GAGTC 4 cut(s) 260, 432, 1406, 1492
ScrFI CCNGG 6 cut(s) 559, 608, 639, 1058, 1569, 1570
SduI GDGCHC 1 cut(s) 606
SfaNI GCATC 2 cut(s) 727, 1162
SfcI CTRYAG 2 cut(s) 209, 1404
SinI GGWCC 3 cut(s) 688, 938, 1298
SmaI CCCGGG 1 cut(s) 1570
SmlI CTYRAG 1 cut(s) 1115
SmoI CTYRAG 1 cut(s) 1115
Sse9I AATT 7 cut(s) 80, 323, 1040, 1048, 1153, 1379, 1548
SspMI CTAG 1 cut(s) 744
StyD4I CCNGG 6 cut(s) 557, 606, 637, 1056, 1567, 1568
StyI CCWWGG 2 cut(s) 684, 1294
TaaI ACNGT 8 cut(s) 293, 332, 919, 931, 1006, 1078, 1342, 1519
TaiI ACGT 2 cut(s) 88, 300
TaqI TCGA 3 cut(s) 456, 862, 1625
TasI AATT 7 cut(s) 80, 323, 1040, 1048, 1153, 1379, 1548
TauI GCSGC 3 cut(s) 198, 403, 623
TfiI GAWTC 8 cut(s) 830, 992, 1034, 1144, 1211, 1324, 1391, 1409
Tru1I TTAA 9 cut(s) 516, 627, 906, 921, 1149, 1382, 1514, 1586, 1637
Tru9I TTAA 9 cut(s) 516, 627, 906, 921, 1149, 1382, 1514, 1586, 1637
TscAI CASTG 2 cut(s) 118, 1345
TseFI GTSAC 3 cut(s) 293, 574, 664
TseI GCWGC 3 cut(s) 740, 869, 1187
Tsp45I GTSAC 3 cut(s) 293, 574, 664
TspDTI ATGAA 5 cut(s) 288, 392, 1101, 1126, 1281
TspGWI ACGGA 3 cut(s) 136, 205, 923
TspMI CCCGGG 1 cut(s) 1568
TspRI CASTG 2 cut(s) 118, 1345
Van91I CCANNNNNTGG 1 cut(s) 1207
VneI GTGCAC 1 cut(s) 602
VpaK11BI GGWCC 3 cut(s) 688, 938, 1298
XapI RAATTY 2 cut(s) 1153, 1548
XmaI CCCGGG 1 cut(s) 1568
XmiI GTMKAC 2 cut(s) 426, 986
XspI CTAG 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.