MD16G1087500.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
6038622 .. 6041047
2426 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1087500.v1.1.491

Sequence Viewer

Length: 1596 bp
ATGATAAGCACCGGCAGGTTTCCACCTTCTTGCACTTCCAAATCCCTTCTCGCCGCCGCCATCTCGTTCCCGCCACACAAATCCCAATTGGGCTTCGCCGTCTTTCCCCTCCCATCTACTTCTTCTTCCTCACTCCCCACAGCCATTTTCAAAACCAGCTTCTTCCTCCCTCCCATTCGGCAAACCCACCGCGCCCATCTCGGGTTTCTCGCCGTCCAAGCCAGGAGAAGTAGCGGGCCGGGAGTCTCCTCCCAGAAAAGGCAACGGAGAGGCGGCGTTGTAACGGACGACGACTCTGATGACGAGGAGGAGTTGGAATTGGACGGCTCTGATGACGTGTTCGGTGGTGAGGAGGAAGACGATGACGAAGACGCGTTTGTGCCGTTTGGGAAGATGAAGAAGTGGCTGGAGAGGAAGCCGCGGGGGTTCGGAGAAGGCAAAGAGTACGACATTTCGATTGAAGAGAAGCTGCTCGAAGAAATTGAGAAGAGTAAGAAAGCACAGGCCGAGAGTAATCTCGCCAAGCTCTCCGAAAAGCCGAATTCGAAGGGAGACCAAAGCAAGAACAGCAGCAAAAGTGTTGGTGCGGTTCCGGATGGAGTTAGAGTGCGGGTGATCAATCTTCCGAAGAAGAAGAACATTCACAGGGATTTGAGCTCGGCTTTCAAGCTGGTTCCGGGTTTGATTAGTATAAACCCCGCGGTTTCCGGAAACAAGAAGACTAAGGACCCCATTTGCAAGGGTTTTGCTTTTGTTCATTTCAAGTCCAAGATCGATGCAACTAGGTTTGTAGAGATGTTTTCTTCACAGAATGTTACATTTGGTAAAATTCAAAAGCAGATAAAATGTGAGCTGGTAGATACGCCACAGCCGAATTTGGATCAGACACAATCAACAAATAACCGTAGTGCTCTCCCACTAATTGTTTCTGGATTGGAAGGAGATTATAAAGCTGATATCGACTCGGATGATTCTTCCATGGACTCATTGGAGGAGACTACCCTTGATGAATATGAGGGCTCTGATGTTGAGATTGTTGGACCAGAACTGGAAGACGTCATGGAACACTCATCGGATAACCATACTGCTCGTGAACTAACTGTTTCTGAATTGGAAGATGAGAAAGCTGATTCTGACTTGGATGATTCTTCCCAGGAGACATGGGAGGAGACCATAGTTGATGAATACGACGGCTCTGATTTTGAACTCAATGAATCAGAACTGGAAGATGCCATAGAGAATTTGGAATCTATCAGTGGCTCAGACCTAGATGGTGGAGATAGAGATAGCATGAAATCAAGGACGGAATCCGAGTCTTTATCAGCAGATTCATCCTCCTCGAAGCAGCTACTTGTCAAAGCAAAAGAAGAGAAGCTTCCCAGACAAAAGCCAGCTATGAAAGGGAAAGACGAAAGCTCGCCTAAGAATAAGAAGAAGAAGAAGCTTAATGTGAAACAAAAAGCAGTGAAGGTTCCAAAGTTGACGGTCGGCGGATCAGCCAAGAGGTTGAAGGTGAAGGAGAAGGCTGTGCTTGGTGACGTGTTCGCAAAATATGGGTCCAAAGAAGCTGTTTTGGCTTCAAAGGTAGAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

532

Amino Acids

58.25

Weight (kDa)

5.11

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012534)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 948
AatII GACGTC 1 cut(s) 1059
Acc36I ACCTGC 1 cut(s) 6
AccII CGCG 4 cut(s) 192, 374, 421, 701
AccIII TCCGGA 2 cut(s) 592, 707
AclWI GGATC 2 cut(s) 888, 1501
AcsI RAATTY 4 cut(s) 541, 828, 874, 1240
AcyI GRCGYC 1 cut(s) 1056
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 2 cut(s) 201, 258
AflIII ACRYGT 3 cut(s) 336, 372, 1539
AgsI TTSAA 8 cut(s) 151, 461, 667, 763, 833, 1205, 1510, 1581
AjiI CACGTC 2 cut(s) 337, 1540
AjnI CCWGG 2 cut(s) 221, 1152
Alw21I GWGCWC 2 cut(s) 659, 913
Alw26I GTCTC 5 cut(s) 250, 546, 989, 1151, 1163
AlwI GGATC 2 cut(s) 888, 1501
Ama87I CYCGRG 1 cut(s) 200
Aor13HI TCCGGA 2 cut(s) 592, 707
AoxI GGCC 2 cut(s) 236, 504
ApeKI GCWGC 3 cut(s) 469, 570, 1345
ApoI RAATTY 4 cut(s) 541, 828, 874, 1240
ArsI GACNNNNNNTTYG 2 cut(s) 1541, 1573
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 4 cut(s) 236, 727, 1040, 1557
AsuC2I CCSGG 2 cut(s) 240, 678
AsuHPI GGTGA 4 cut(s) 359, 625, 1525, 1547
AsuII TTCGAA 1 cut(s) 545
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 3 cut(s) 727, 1040, 1557
BanII GRGCYC 2 cut(s) 659, 1022
BauI CACGAG 1 cut(s) 1089
BbsI GAAGAC 4 cut(s) 363, 375, 725, 1059
Bbv12I GWGCWC 2 cut(s) 659, 913
BbvI GCAGC 3 cut(s) 456, 582, 1357
BccI CCATC 5 cut(s) 68, 121, 204, 590, 1265
BceAI ACGGC 5 cut(s) 83, 197, 340, 367, 1207
BciT130I CCWGG 2 cut(s) 223, 1154
BclI TGATCA 1 cut(s) 615
BcnI CCSGG 2 cut(s) 240, 678
BcoDI GTCTC 5 cut(s) 250, 546, 989, 1151, 1163
BfaI CTAG 2 cut(s) 783, 1268
BfuAI ACCTGC 1 cut(s) 6
BisI GCNGC 7 cut(s) 54, 57, 274, 419, 470, 571, 1346
BlsI GCNGC 7 cut(s) 55, 58, 275, 420, 471, 572, 1347
Bme1390I CCNGG 4 cut(s) 223, 240, 678, 1154
Bme18I GGWCC 3 cut(s) 727, 1040, 1557
BmeT110I CYCGRG 1 cut(s) 200
BmgBI CACGTC 2 cut(s) 337, 1540
BmgT120I GGNCC 4 cut(s) 236, 727, 1040, 1557
BmiI GGNNCC 5 cut(s) 591, 675, 729, 1473, 1558
BmrFI CCNGG 4 cut(s) 223, 240, 678, 1154
BmsI GCATC 2 cut(s) 766, 1219
BpiI GAAGAC 4 cut(s) 363, 375, 725, 1059
BpmI CTGGAG 1 cut(s) 428
Bpu14I TTCGAA 1 cut(s) 545
BpuMI CCSGG 2 cut(s) 240, 678
Bsa29I ATCGAT 1 cut(s) 774
BsaHI GRCGYC 1 cut(s) 1056
BsaI GGTCTC 2 cut(s) 546, 1163
BsaJI CCNNGG 4 cut(s) 419, 699, 978, 1152
BsaWI WCCGGW 2 cut(s) 592, 707
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 258
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 2 cut(s) 1053, 1227
BseAI TCCGGA 2 cut(s) 592, 707
BseBI CCWGG 2 cut(s) 223, 1154
BseCI ATCGAT 1 cut(s) 774
BseDI CCNNGG 4 cut(s) 419, 699, 978, 1152
BseGI GGATG 4 cut(s) 601, 973, 1147, 1331
BseLI CCNNNNNNNGG 2 cut(s) 201, 258
BseMII CTCAG 1 cut(s) 1275
BseNI ACTGG 2 cut(s) 1053, 1227
BseRI GAGGAG 7 cut(s) 238, 320, 323, 365, 1007, 1181, 1327
BseXI GCAGC 3 cut(s) 456, 582, 1357
Bsh1236I CGCG 4 cut(s) 192, 374, 421, 701
Bsh1285I CGRYCG 1 cut(s) 1488
BshFI GGCC 2 cut(s) 238, 506
BshVI ATCGAT 1 cut(s) 774
BsiEI CGRYCG 1 cut(s) 1488
BsiHKAI GWGCWC 2 cut(s) 659, 913
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 5 cut(s) 12, 239, 593, 677, 708
BslI CCNNNNNNNGG 2 cut(s) 201, 258
BsmAI GTCTC 5 cut(s) 250, 546, 989, 1151, 1163
BsnI GGCC 2 cut(s) 238, 506
Bso31I GGTCTC 2 cut(s) 546, 1163
BsoBI CYCGRG 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 545
Bsp1286I GDGCHC 3 cut(s) 659, 913, 1022
Bsp13I TCCGGA 2 cut(s) 592, 707
Bsp143I GATC 4 cut(s) 615, 771, 880, 1493
Bsp19I CCATGG 1 cut(s) 978
BspANI GGCC 2 cut(s) 238, 506
BspCNI CTCAG 1 cut(s) 1274
BspDI ATCGAT 1 cut(s) 774
BspEI TCCGGA 2 cut(s) 592, 707
BspFNI CGCG 4 cut(s) 192, 374, 421, 701
BspLI GGNNCC 5 cut(s) 591, 675, 729, 1473, 1558
BspMI ACCTGC 1 cut(s) 6
BspPI GGATC 2 cut(s) 888, 1501
BspT104I TTCGAA 1 cut(s) 545
BspTNI GGTCTC 2 cut(s) 546, 1163
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 2 cut(s) 1053, 1227
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 4 cut(s) 419, 699, 978, 1152
BssMI GATC 4 cut(s) 615, 771, 880, 1493
BssNI GRCGYC 1 cut(s) 1056
BssSI CACGAG 1 cut(s) 1089
BssT1I CCWWGG 1 cut(s) 978
Bst2BI CACGAG 1 cut(s) 1089
Bst2UI CCWGG 2 cut(s) 223, 1154
Bst4CI ACNGT 3 cut(s) 905, 1102, 1486
Bst6I CTCTTC 3 cut(s) 456, 482, 1362
BstACI GRCGYC 1 cut(s) 1056
BstBI TTCGAA 1 cut(s) 545
BstC8I GCNNGC 3 cut(s) 236, 1392, 1418
BstDEI CTNAG 3 cut(s) 723, 1261, 1422
BstDSI CCRYGG 3 cut(s) 419, 699, 978
BstF5I GGATG 4 cut(s) 601, 973, 1147, 1331
BstFNI CGCG 4 cut(s) 192, 374, 421, 701
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 4 cut(s) 618, 774, 883, 1496
BstMAI GTCTC 5 cut(s) 250, 546, 989, 1151, 1163
BstMBI GATC 4 cut(s) 615, 771, 880, 1493
BstMCI CGRYCG 1 cut(s) 1488
BstMWI GCNNNNNNNGC 3 cut(s) 218, 567, 1574
BstNI CCWGG 2 cut(s) 223, 1154
BstSCI CCNGG 4 cut(s) 221, 238, 676, 1152
BstUI CGCG 4 cut(s) 192, 374, 421, 701
BstV1I GCAGC 3 cut(s) 456, 582, 1357
BstV2I GAAGAC 4 cut(s) 363, 375, 725, 1059
Bsu15I ATCGAT 1 cut(s) 774
BsuRI GGCC 2 cut(s) 238, 506
BsuTUI ATCGAT 1 cut(s) 774
BtgI CCRYGG 3 cut(s) 419, 699, 978
BtrI CACGTC 2 cut(s) 337, 1540
BtsCI GGATG 4 cut(s) 601, 973, 1147, 1331
BtsI GCAGTG 1 cut(s) 1470
BtsIMutI CAGTG 2 cut(s) 1261, 1470
BveI ACCTGC 1 cut(s) 6
Cac8I GCNNGC 3 cut(s) 236, 1392, 1418
CfoI GCGC 1 cut(s) 194
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 4 cut(s) 236, 727, 1040, 1557
Cfr42I CCGCGG 2 cut(s) 422, 702
ClaI ATCGAT 1 cut(s) 774
CseI GACGC 1 cut(s) 380
Csp6I GTAC 1 cut(s) 445
CviAII CATG 4 cut(s) 979, 1060, 1161, 1291
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 3 cut(s) 723, 1261, 1422
DpnI GATC 4 cut(s) 617, 773, 882, 1495
DpnII GATC 4 cut(s) 615, 771, 880, 1493
Eam1104I CTCTTC 3 cut(s) 456, 482, 1362
EarI CTCTTC 3 cut(s) 456, 482, 1362
EciI GGCGGA 1 cut(s) 1506
Ecl136II GAGCTC 1 cut(s) 657
Eco130I CCWWGG 1 cut(s) 978
Eco24I GRGCYC 2 cut(s) 659, 1022
Eco31I GGTCTC 2 cut(s) 546, 1163
Eco32I GATATC 1 cut(s) 958
Eco47I GGWCC 3 cut(s) 727, 1040, 1557
Eco53kI GAGCTC 1 cut(s) 657
Eco88I CYCGRG 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 657
EcoO109I RGGNCCY 1 cut(s) 727
EcoRI GAATTC 1 cut(s) 541
EcoRII CCWGG 2 cut(s) 221, 1152
EcoRV GATATC 1 cut(s) 958
EcoT14I CCWWGG 1 cut(s) 978
EcoT38I GRGCYC 2 cut(s) 659, 1022
ErhI CCWWGG 1 cut(s) 978
FaeI CATG 4 cut(s) 982, 1063, 1164, 1294
FalI AAGNNNNNCTT 2 cut(s) 1359, 1391
FatI CATG 4 cut(s) 978, 1059, 1160, 1290
FauI CCCGC 5 cut(s) 78, 227, 414, 603, 706
FbaI TGATCA 1 cut(s) 615
Fnu4HI GCNGC 7 cut(s) 54, 57, 274, 419, 470, 571, 1346
FokI GGATG 4 cut(s) 608, 980, 1154, 1318
FriOI GRGCYC 2 cut(s) 659, 1022
Fsp4HI GCNGC 7 cut(s) 54, 57, 274, 419, 470, 571, 1346
FspBI CTAG 2 cut(s) 783, 1268
GlaI GCGC 1 cut(s) 193
GluI GCNGC 7 cut(s) 54, 57, 274, 419, 470, 571, 1346
GsuI CTGGAG 1 cut(s) 428
HaeIII GGCC 2 cut(s) 238, 506
HapII CCGG 5 cut(s) 12, 239, 593, 677, 708
HgaI GACGC 1 cut(s) 380
HhaI GCGC 1 cut(s) 194
Hin1I GRCGYC 1 cut(s) 1056
Hin1II CATG 4 cut(s) 982, 1063, 1164, 1294
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HincII GTYRAC 1 cut(s) 1482
HindII GTYRAC 1 cut(s) 1482
HindIII AAGCTT 2 cut(s) 1373, 1442
HpaII CCGG 5 cut(s) 12, 239, 593, 677, 708
HphI GGTGA 4 cut(s) 359, 625, 1525, 1547
Hpy166II GTNNAC 2 cut(s) 1094, 1482
Hpy188III TCNNGA 4 cut(s) 593, 708, 930, 1091
Hpy8I GTNNAC 2 cut(s) 1094, 1482
Hpy99I CGWCG 2 cut(s) 293, 1193
HpyAV CCTTC 9 cut(s) 36, 56, 428, 541, 932, 1462, 1504, 1510, 1516
HpyCH4III ACNGT 3 cut(s) 905, 1102, 1486
HpyCH4IV ACGT 3 cut(s) 336, 1056, 1539
HpyCH4V TGCA 3 cut(s) 33, 738, 779
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 567, 1574
HpyF3I CTNAG 3 cut(s) 723, 1261, 1422
HpySE526I ACGT 3 cut(s) 336, 1056, 1539
Hsp92I GRCGYC 1 cut(s) 1056
Hsp92II CATG 4 cut(s) 982, 1063, 1164, 1294
HspAI GCGC 1 cut(s) 192
Kpn2I TCCGGA 2 cut(s) 592, 707
Ksp22I TGATCA 1 cut(s) 615
KspI CCGCGG 2 cut(s) 422, 702
Kzo9I GATC 4 cut(s) 615, 771, 880, 1493
Lsp1109I GCAGC 3 cut(s) 456, 582, 1357
LweI GCATC 2 cut(s) 766, 1219
MaeI CTAG 2 cut(s) 783, 1268
MaeII ACGT 3 cut(s) 336, 1056, 1539
MaeIII GTNAC 3 cut(s) 280, 814, 1535
MalI GATC 4 cut(s) 617, 773, 882, 1495
MboI GATC 4 cut(s) 615, 771, 880, 1493
MfeI CAATTG 1 cut(s) 86
MhlI GDGCHC 3 cut(s) 659, 913, 1022
MluCI AATT 9 cut(s) 86, 317, 480, 541, 828, 874, 921, 1109, 1240
MluI ACGCGT 1 cut(s) 372
MlyI GAGTC 5 cut(s) 252, 287, 956, 977, 1322
MmeI TCCRAC 2 cut(s) 294, 1018
MroI TCCGGA 2 cut(s) 592, 707
MseI TTAA 1 cut(s) 1446
MspA1I CMGCKG 2 cut(s) 421, 701
MspI CCGG 5 cut(s) 12, 239, 593, 677, 708
MspR9I CCNGG 4 cut(s) 223, 240, 678, 1154
MunI CAATTG 1 cut(s) 86
MvaI CCWGG 2 cut(s) 223, 1154
MvnI CGCG 4 cut(s) 192, 374, 421, 701
MwoI GCNNNNNNNGC 3 cut(s) 218, 567, 1574
NciI CCSGG 2 cut(s) 240, 678
NcoI CCATGG 1 cut(s) 978
NdeII GATC 4 cut(s) 615, 771, 880, 1493
NlaIII CATG 4 cut(s) 982, 1063, 1164, 1294
NlaIV GGNNCC 5 cut(s) 591, 675, 729, 1473, 1558
NmeAIII GCCGAG 2 cut(s) 532, 638
NmuCI GTSAC 1 cut(s) 1535
NspV TTCGAA 1 cut(s) 545
PcsI WCGNNNNNNNCGW 1 cut(s) 869
PfeI GAWTC 7 cut(s) 971, 1130, 1145, 1214, 1247, 1307, 1328
PkrI GCNGC 7 cut(s) 55, 58, 275, 420, 471, 572, 1347
PleI GAGTC 5 cut(s) 251, 287, 956, 977, 1321
PpsI GAGTC 5 cut(s) 251, 287, 956, 977, 1321
PpuMI RGGWCCY 1 cut(s) 727
PsiI TTATAA 1 cut(s) 948
Psp124BI GAGCTC 1 cut(s) 659
Psp5II RGGWCCY 1 cut(s) 727
Psp6I CCWGG 2 cut(s) 221, 1152
PspGI CCWGG 2 cut(s) 221, 1152
PspN4I GGNNCC 5 cut(s) 591, 675, 729, 1473, 1558
PspPI GGNCC 4 cut(s) 236, 727, 1040, 1557
PspPPI RGGWCCY 1 cut(s) 727
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
SacI GAGCTC 1 cut(s) 659
SacII CCGCGG 2 cut(s) 422, 702
SaqAI TTAA 1 cut(s) 1446
SatI GCNGC 7 cut(s) 54, 57, 274, 419, 470, 571, 1346
Sau3AI GATC 4 cut(s) 615, 771, 880, 1493
Sau96I GGNCC 4 cut(s) 236, 727, 1040, 1557
SchI GAGTC 5 cut(s) 252, 287, 956, 977, 1322
ScrFI CCNGG 4 cut(s) 223, 240, 678, 1154
SduI GDGCHC 3 cut(s) 659, 913, 1022
SfaNI GCATC 2 cut(s) 766, 1219
Sfr303I CCGCGG 2 cut(s) 422, 702
SfuI TTCGAA 1 cut(s) 545
SgrBI CCGCGG 2 cut(s) 422, 702
SinI GGWCC 3 cut(s) 727, 1040, 1557
Sse9I AATT 9 cut(s) 86, 317, 480, 541, 828, 874, 921, 1109, 1240
SspMI CTAG 2 cut(s) 783, 1268
SstI GAGCTC 1 cut(s) 659
StyD4I CCNGG 4 cut(s) 221, 238, 676, 1152
StyI CCWWGG 1 cut(s) 978
TaaI ACNGT 3 cut(s) 905, 1102, 1486
TaiI ACGT 3 cut(s) 339, 1059, 1542
TaqI TCGA 6 cut(s) 455, 474, 545, 774, 960, 1340
TasI AATT 9 cut(s) 86, 317, 480, 541, 828, 874, 921, 1109, 1240
TauI GCSGC 4 cut(s) 56, 59, 276, 421
TfiI GAWTC 7 cut(s) 971, 1130, 1145, 1214, 1247, 1307, 1328
Tru1I TTAA 1 cut(s) 1446
Tru9I TTAA 1 cut(s) 1446
TscAI CASTG 2 cut(s) 1261, 1470
TseFI GTSAC 1 cut(s) 1535
TseI GCWGC 3 cut(s) 469, 570, 1345
Tsp45I GTSAC 1 cut(s) 1535
TspDTI ATGAA 8 cut(s) 410, 746, 1023, 1197, 1227, 1307, 1320, 1412
TspGWI ACGGA 3 cut(s) 280, 299, 1319
TspRI CASTG 2 cut(s) 1261, 1470
VpaK11BI GGWCC 3 cut(s) 727, 1040, 1557
XapI RAATTY 4 cut(s) 541, 828, 874, 1240
XcmI CCANNNNNNNNNTGG 2 cut(s) 985, 1240
XspI CTAG 2 cut(s) 783, 1268
ZraI GACGTC 1 cut(s) 1057
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.