Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0012534

Physical Location & Seq

Genomic Coordinates Reverse (-)

4980829 .. 4981529

Gene Structure 701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCCGGTTTTCTGTTACATACGAGTTGATTGGTTTTTCTATCATGGCAGTTTCGTTGAGATGTTTTCTTCGCAGAGTGTTACATTTGGTAAGATTCAAAAGCAGATAAAATGTGAGCTTAGATACGCCACCGCTGAATCTGATTTTGACTCGGACAATTGTTCCATGGACACATCGGAGGAGTCTATCCTTGATGAATATGAGGGCTCTGATGTTGAGATTGATGGACCAGAACTGGAAGACGCCATAAAACAATCATCGGATAACGATAATGCTCGTCAACTAACTGTTTCTGAATTGGAAGAAGATCAGAAAGCTGATTCTGACTTGGATGATTCTTCCCTGGACACACGGGAGGAGAGCATAGTTGATGAACACGACGGCTCTGATTTTGAACTCGATGAACCAGAACTGGAAGATTCCATAGAGAATCTGGAATCTATCAGTGGCTCAGACCTAGATGGACGAGACAGAGATAGCATGGAATCATGGACGGAATCCGAGTCTTTATCAGCAGATTCATCCTCCTCTAACCAGCTACTTGTTAAAGCTAAAGAAGAGAAGCTTCCCCGCCAAAAGCCAGTTGTGAAAGGGAAAGTAGAAAGCTCCCCTAAGAAGAAGAAGCAGCTTACTGGCGGATCCCCCAGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

218

Amino Acids

24.44

Weight (kDa)

4.21

Isoelectric Point (pI)

61.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012534)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70200
fragaria_vesca	FvH4_4g34980 FvH4_5g29371
malus_domestica	MD16G1087500.v1.1
prunus_persica	Prupe.1G259500_v2.0.a1
pyrus_communis	pycom13g07510 pycom16g07510
rosa_chinensis	RchiOBHm_Chr4g0444501
rosa_laevigata	RLG00000005829
rosa_multiflora	Rmu_co8304031.1_g000001 Rmu_sc0003839.1_g000008 Rmu_sc0035747.1_g000002
rosa_roxburghii	Rroxscaffold_5G00384980
rosa_rugosa	Rorug04G0353200
rosa_samantha	Rh4AG413400 Rh4BG424900 Rh4CG439500 Rh4DG420400
rosa_wichuraiana	Rw4G035510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	132, 571, 636
AclWI	GGATC	2 cut(s)	633, 646
AcyI	GRCGYC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	648
AgsI	TTSAA	2 cut(s)	98, 395
AjnI	CCWGG	2 cut(s)	342, 644
AluBI	AGCT	7 cut(s)	118, 317, 538, 551, 565, 606, 628
AluI	AGCT	7 cut(s)	118, 317, 538, 551, 565, 606, 628
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	2 cut(s)	633, 646
ApeKI	GCWGC	1 cut(s)	625
AspS9I	GGNCC	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	227
BamHI	GGATCC	1 cut(s)	638
BanII	GRGCYC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	637
BccI	CCATC	2 cut(s)	218, 455
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	2 cut(s)	344, 646
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	1 cut(s)	458
BisI	GCNGC	1 cut(s)	626
BlsI	GCNGC	1 cut(s)	627
Bme1390I	CCNGG	2 cut(s)	344, 646
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	640
BmrFI	CCNGG	2 cut(s)	344, 646
BpiI	GAAGAC	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	165, 342, 644
Bsc4I	CCNNNNNNNGG	1 cut(s)	648
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	4 cut(s)	240, 417, 581, 637
BseBI	CCWGG	2 cut(s)	344, 646
BseDI	CCNNGG	3 cut(s)	165, 342, 644
BseGI	GGATG	2 cut(s)	337, 521
BseLI	CCNNNNNNNGG	1 cut(s)	648
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	4 cut(s)	240, 417, 581, 637
BseRI	GAGGAG	3 cut(s)	194, 371, 517
BseXI	GCAGC	1 cut(s)	637
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	648
BsmAI	GTCTC	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	2 cut(s)	307, 638
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	3 cut(s)	132, 571, 636
BspCNI	CTCAG	1 cut(s)	464
BspLI	GGNNCC	1 cut(s)	640
BspPI	GGATC	2 cut(s)	633, 646
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	4 cut(s)	240, 417, 581, 637
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	3 cut(s)	165, 342, 644
BssMI	GATC	2 cut(s)	307, 638
BssNI	GRCGYC	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	344, 646
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	1 cut(s)	552
BstACI	GRCGYC	1 cut(s)	243
BstDEI	CTNAG	3 cut(s)	119, 451, 612
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	337, 521
BstKTI	GATC	2 cut(s)	310, 641
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	2 cut(s)	307, 638
BstNI	CCWGG	2 cut(s)	344, 646
BstSCI	CCNGG	2 cut(s)	342, 644
BstV1I	GCAGC	1 cut(s)	637
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	638
BstYI	RGATCY	1 cut(s)	638
BtgI	CCRYGG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	337, 521
BtsIMutI	CAGTG	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	227
CseI	GACGC	1 cut(s)	251
CviAII	CATG	4 cut(s)	44, 166, 481, 489
DdeI	CTNAG	3 cut(s)	119, 451, 612
DpnI	GATC	2 cut(s)	309, 640
DpnII	GATC	2 cut(s)	307, 638
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
EciI	GGCGGA	1 cut(s)	651
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	342, 644
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	4 cut(s)	47, 169, 484, 492
FaiI	YATR	9 cut(s)	20, 45, 167, 201, 248, 365, 425, 482, 490
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FatI	CATG	4 cut(s)	43, 165, 480, 488
FauI	CCCGC	1 cut(s)	578
Fnu4HI	GCNGC	1 cut(s)	626
FokI	GGATG	2 cut(s)	344, 508
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	626
FspBI	CTAG	1 cut(s)	458
GluI	GCNGC	1 cut(s)	626
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	1 cut(s)	251
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	4 cut(s)	47, 169, 484, 492
HincII	GTYRAC	1 cut(s)	281
HindII	GTYRAC	1 cut(s)	281
HindIII	AAGCTT	1 cut(s)	563
HpaII	CCGG	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188III	TCNNGA	1 cut(s)	434
Hpy8I	GTNNAC	1 cut(s)	281
Hpy99I	CGWCG	1 cut(s)	383
HpyCH4III	ACNGT	1 cut(s)	289
HpyF3I	CTNAG	3 cut(s)	119, 451, 612
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	4 cut(s)	47, 169, 484, 492
Kzo9I	GATC	2 cut(s)	307, 638
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	1 cut(s)	637
MaeI	CTAG	1 cut(s)	458
MaeIII	GTNAC	2 cut(s)	14, 79
MalI	GATC	2 cut(s)	309, 640
MboI	GATC	2 cut(s)	307, 638
MboII	GAAGA	9 cut(s)	60, 251, 314, 317, 330, 428, 569, 628, 631
MfeI	CAATTG	1 cut(s)	157
MflI	RGATCY	1 cut(s)	638
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	2 cut(s)	157, 296
MlyI	GAGTC	3 cut(s)	143, 191, 512
MnlI	CCTC	6 cut(s)	172, 196, 349, 535, 538, 642
MseI	TTAA	1 cut(s)	546
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	344, 646
MunI	CAATTG	1 cut(s)	157
MvaI	CCWGG	2 cut(s)	344, 646
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	2 cut(s)	307, 638
NlaIII	CATG	4 cut(s)	47, 169, 484, 492
NlaIV	GGNNCC	1 cut(s)	640
PkrI	GCNGC	1 cut(s)	627
PleI	GAGTC	3 cut(s)	143, 190, 511
PpsI	GAGTC	3 cut(s)	143, 190, 511
Psp6I	CCWGG	2 cut(s)	342, 644
PspGI	CCWGG	2 cut(s)	342, 644
PspN4I	GGNNCC	1 cut(s)	640
PspPI	GGNCC	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	638
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	1 cut(s)	626
Sau3AI	GATC	2 cut(s)	307, 638
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	3 cut(s)	143, 191, 512
ScrFI	CCNGG	2 cut(s)	344, 646
SduI	GDGCHC	1 cut(s)	209
SetI	ASST	9 cut(s)	120, 319, 459, 540, 553, 567, 608, 630, 653
SinI	GGWCC	1 cut(s)	227
Sse9I	AATT	2 cut(s)	157, 296
SsiI	CCGC	3 cut(s)	132, 571, 636
SspMI	CTAG	1 cut(s)	458
StyD4I	CCNGG	2 cut(s)	342, 644
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	399
TasI	AATT	2 cut(s)	157, 296
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	1 cut(s)	451
TseI	GCWGC	1 cut(s)	625
TspDTI	ATGAA	4 cut(s)	210, 387, 417, 510
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XspI	CTAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.