Rh4CG439500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0012534
Physical Location & Seq
Forward (+)
67681753 .. 67684217
2465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG439500.1

Sequence Viewer

Length: 1653 bp
ATGATAAGCACCGCAAGGCTTCCACCTTCCTCCTCCTCTCTCTTCACCACTCCTTCTCTCTCCTTCTCCTTCAAAACCCAATTACGTTTCGCTTCCACTTCTTCACTCCCCACGGCCATTTTCAAACACAACCGCTTCCTCTCCTCCGTTCACCTCACGCGCCTCCGCTTCCCCGCCGTCCACGCCCAGAAGAGCCGCAAGTTCGGACTGCAGTCCGTGCGGAAGAAGCGGAAAGGCGGCAACAAGCTCTTGGCAATGGACGACGACTCCGATGAAGAGGACGACGATGACGGTGACGTGGACGGCGGAGATGAGGAGCTGGAATTGGACGGTGAGGATGACGAAGGCGAAGGTCTGTTGGTGCCGTTTGGGGAGATGAAGAAGTGGCTGGAGAAGAAGCCGCGTGGGTTCGGCGAAGGCAGAGTCTACGACACTCCGATTGAGGACCAACTGCTCGAAGAAATACAGGTTGAGACTTCCACTAAGCTCCAAAACGACGCCGTAAAGGCCAATCTTAAACCTAAGAAGAACACAGCTGATGAGGTGGTTGTTCCGGCTGGGTTTCGGGTGAGGGTGACGAACCTGCCGAAGAAGAAGAATGTGCACCGGGATTTGACTGCGGCGTTTAAGCTGGTTCCGGGTTTGCTGAGCATAAACCCAGCTGTGACTGGAAACAAGAAGACCAAGGACCCCATTTGCAAGGGTTTTGCTTTTGTGCATTTCAAGACTGAGAAGGATGCAGCTAGGTTTGTGGAAACATTTTCTTCGCAGAGTATTACATTCGGGAAAGTTCAGAAGCAGATAAAATGCGAGGTGGTAACTTCACCGGATTCTGATGTGGAACAATCAAAATCTGCTCCTCGAATAGCTGCTCCGCGACTAAATGCTCTTAAACCCGTAACAGTTAACTATACTGTCCGTGGTCCTAAACCAGTAACAGATCCTGCTACTAAAACATCAACCAATAAGTCTACTGATTCCCAACTGACTGTTTCTGCATCTGGAGACCAGAAAGTGGATTCTGAATTGGATAATTCTTCCCTGGACACATTGGAGGAGATTGTATCTGATGAATATGATGGCTCTGATGTTGAAATCCTTGAGCCAGAACTGGAAGATTTCATGGAGAATCTTAAAAATTCAGGAGACTCTCTTGATGCTCAACTGACAGCTGCATTTGGAGACCAGAAGGTGGATTCTGACTTGGATGATGTTACGCTGGACACATTGGATGAGACTACATCTGATGATGAATATGATGGCCCTGATGTTGAGATCCTTGGACTAGAACCGGAAGATTTCAAGGAGAATCTGCAAACCTCCACTGTGTCAGACCTAAATGGTGGAGACAGCAGTATCATAGAATTAACGACAGAATCCGAGTCTTCTGCAGATTCGTCTTCCTCAAAGCAGTTAATTGCTAAGAGTAAAGAAGAGAAGGTTCCTCGCAAAAAGCAAGCTGTGAAAGGGAAAGAAGAAGGGACTCCTAAGAAGAAGAAGAAGTTAACCGTGAAAGAAAAAGCACCAAAAGTTCCAAAGTTGGTCGTCTCCGGGTCTTCCAAGAGGTTAAAGGTCAAGGAGAAGGCTGTGCTTAGTGATGTGTTCTCAAAATATGGGTTAAACCCAGCTTTGGCTTCAAATGAAGATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

550

Amino Acids

60.19

Weight (kDa)

5.1

Isoelectric Point (pI)

39.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70200
fragaria_vesca FvH4_4g34980 FvH4_5g29371
malus_domestica MD16G1087500.v1.1
prunus_persica Prupe.1G259500_v2.0.a1
pyrus_communis pycom13g07510 pycom16g07510
rosa_chinensis RchiOBHm_Chr4g0444501
rosa_laevigata RLG00000005829
rosa_multiflora Rmu_co8304031.1_g000001 Rmu_sc0003839.1_g000008 Rmu_sc0035747.1_g000002
rosa_roxburghii Rroxscaffold_5G00384980
rosa_rugosa Rorug04G0353200
rosa_samantha Rh4AG413400 Rh4BG424900 Rh4CG439500 Rh4DG420400
rosa_wichuraiana Rw4G035510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 591
AccB1I GGYRCC 1 cut(s) 361
AccB7I CCANNNNNTGG 2 cut(s) 1015, 1192
AccI GTMKAC 2 cut(s) 426, 971
AccII CGCG 3 cut(s) 160, 403, 877
AclWI GGATC 2 cut(s) 935, 1270
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 1138
AcyI GRCGYC 1 cut(s) 498
AfiI CCNNNNNNNGG 3 cut(s) 1015, 1192, 1630
AgsI TTSAA 6 cut(s) 73, 124, 724, 1094, 1303, 1638
AjiI CACGTC 1 cut(s) 298
AjnI CCWGG 1 cut(s) 1041
Alw21I GWGCWC 1 cut(s) 606
Alw26I GTCTC 7 cut(s) 467, 999, 1140, 1176, 1229, 1341, 1552
Alw44I GTGCAC 1 cut(s) 602
AlwI GGATC 2 cut(s) 935, 1270
AlwNI CAGNNNCTG 1 cut(s) 944
AoxI GGCC 3 cut(s) 114, 507, 1261
ApaLI GTGCAC 1 cut(s) 602
ApeKI GCWGC 3 cut(s) 740, 869, 1172
ApoI RAATTY 1 cut(s) 1138
ArsI GACNNNNNNTTYG 2 cut(s) 408, 440
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 4 cut(s) 445, 688, 923, 1262
AsuC2I CCSGG 3 cut(s) 608, 639, 1552
AsuHPI GGTGA 7 cut(s) 37, 143, 305, 344, 580, 586, 816
AvaII GGWCC 3 cut(s) 445, 688, 923
BaeGI GKGCMC 1 cut(s) 606
BaeI ACNNNNGTAYC 2 cut(s) 1339, 1372
BanI GGYRCC 1 cut(s) 361
BbsI GAAGAC 4 cut(s) 686, 1377, 1392, 1548
Bbv12I GWGCWC 1 cut(s) 606
BbvI GCAGC 3 cut(s) 752, 856, 1159
BccI CCATC 2 cut(s) 1073, 1253
BceAI ACGGC 5 cut(s) 129, 161, 319, 349, 485
BcgI CGANNNNNNTGC 2 cut(s) 1370, 1404
BciT130I CCWGG 1 cut(s) 1043
BcnI CCSGG 3 cut(s) 608, 639, 1552
BcoDI GTCTC 7 cut(s) 467, 999, 1140, 1176, 1229, 1341, 1552
BfaI CTAG 2 cut(s) 744, 1286
BfmI CTRYAG 2 cut(s) 209, 1389
BfuAI ACCTGC 1 cut(s) 591
BglI GCCNNNNNGGC 1 cut(s) 506
BisI GCNGC 7 cut(s) 196, 238, 401, 621, 741, 870, 1173
BlpI GCTNAGC 1 cut(s) 647
BlsI GCNGC 7 cut(s) 197, 239, 402, 622, 742, 871, 1174
Bme1390I CCNGG 4 cut(s) 608, 639, 1043, 1552
Bme18I GGWCC 3 cut(s) 445, 688, 923
BmgBI CACGTC 1 cut(s) 298
BmgT120I GGNCC 4 cut(s) 445, 688, 923, 1262
BmiI GGNNCC 4 cut(s) 363, 636, 690, 1443
BmrFI CCNGG 4 cut(s) 608, 639, 1043, 1552
BmsI GCATC 3 cut(s) 727, 1007, 1147
BoxI GACNNNNGTC 1 cut(s) 211
BpiI GAAGAC 4 cut(s) 686, 1377, 1392, 1548
BpmI CTGGAG 2 cut(s) 410, 1023
Bpu1102I GCTNAGC 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 1121
BpuMI CCSGG 3 cut(s) 608, 639, 1552
BsaHI GRCGYC 1 cut(s) 498
BsaI GGTCTC 2 cut(s) 999, 1176
BsaJI CCNNGG 5 cut(s) 111, 684, 919, 1041, 1279
BsaWI WCCGGW 2 cut(s) 826, 1291
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 3 cut(s) 1015, 1192, 1630
Bse1I ACTGG 3 cut(s) 673, 932, 1116
Bse3DI GCAATG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 1043
BseDI CCNNGG 5 cut(s) 111, 684, 919, 1041, 1279
BseGI GGATG 4 cut(s) 343, 742, 1213, 1237
BseLI CCNNNNNNNGG 3 cut(s) 1015, 1192, 1630
BseMI GCAATG 1 cut(s) 261
BseMII CTCAG 2 cut(s) 638, 720
BseNI ACTGG 3 cut(s) 673, 932, 1116
BseRI GAGGAG 6 cut(s) 22, 25, 133, 329, 849, 1070
BseSI GKGCMC 1 cut(s) 606
BseXI GCAGC 3 cut(s) 752, 856, 1159
BseYI CCCAGC 3 cut(s) 557, 658, 1624
Bsh1236I CGCG 3 cut(s) 160, 403, 877
BshFI GGCC 3 cut(s) 116, 509, 1263
BshNI GGYRCC 1 cut(s) 361
BsiHKAI GWGCWC 1 cut(s) 606
BsiSI CCGG 6 cut(s) 554, 607, 638, 827, 1292, 1551
BslFI GGGAC 1 cut(s) 1495
BslI CCNNNNNNNGG 3 cut(s) 1015, 1192, 1630
BsmAI GTCTC 7 cut(s) 467, 999, 1140, 1176, 1229, 1341, 1552
BsmBI CGTCTC 1 cut(s) 1552
BsmFI GGGAC 1 cut(s) 1495
BsnI GGCC 3 cut(s) 116, 509, 1263
Bso31I GGTCTC 2 cut(s) 999, 1176
Bsp1286I GDGCHC 1 cut(s) 606
Bsp143I GATC 2 cut(s) 940, 1275
Bsp1720I GCTNAGC 1 cut(s) 647
BspANI GGCC 3 cut(s) 116, 509, 1263
BspCNI CTCAG 2 cut(s) 639, 721
BspFNI CGCG 3 cut(s) 160, 403, 877
BspLI GGNNCC 4 cut(s) 363, 636, 690, 1443
BspMAI CTGCAG 2 cut(s) 213, 1393
BspMI ACCTGC 1 cut(s) 591
BspPI GGATC 2 cut(s) 935, 1270
BspQI GCTCTTC 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 361
BspTNI GGTCTC 2 cut(s) 999, 1176
BsrDI GCAATG 1 cut(s) 261
BsrI ACTGG 3 cut(s) 673, 932, 1116
BssECI CCNNGG 5 cut(s) 111, 684, 919, 1041, 1279
BssMI GATC 2 cut(s) 940, 1275
BssNI GRCGYC 1 cut(s) 498
BssT1I CCWWGG 2 cut(s) 684, 1279
Bst2UI CCWGG 1 cut(s) 1043
Bst4CI ACNGT 7 cut(s) 293, 332, 904, 916, 991, 1327, 1510
Bst6I CTCTTC 4 cut(s) 47, 185, 270, 1428
BstACI GRCGYC 1 cut(s) 498
BstAPI GCANNNNNTGC 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 1458
BstDEI CTNAG 7 cut(s) 483, 522, 647, 729, 1422, 1488, 1592
BstDSI CCRYGG 2 cut(s) 111, 919
BstF5I GGATG 4 cut(s) 343, 742, 1213, 1237
BstFNI CGCG 3 cut(s) 160, 403, 877
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 2 cut(s) 943, 1278
BstMAI GTCTC 7 cut(s) 467, 999, 1140, 1176, 1229, 1341, 1552
BstMBI GATC 2 cut(s) 940, 1275
BstMWI GCNNNNNNNGC 4 cut(s) 182, 217, 226, 506
BstNI CCWGG 1 cut(s) 1043
BstPAI GACNNNNGTC 1 cut(s) 211
BstSCI CCNGG 4 cut(s) 606, 637, 1041, 1550
BstSFI CTRYAG 2 cut(s) 209, 1389
BstSLI GKGCMC 1 cut(s) 606
BstUI CGCG 3 cut(s) 160, 403, 877
BstV1I GCAGC 3 cut(s) 752, 856, 1159
BstV2I GAAGAC 4 cut(s) 686, 1377, 1392, 1548
BstX2I RGATCY 2 cut(s) 940, 1275
BstYI RGATCY 2 cut(s) 940, 1275
BsuRI GGCC 3 cut(s) 116, 509, 1263
BtgI CCRYGG 2 cut(s) 111, 919
BtrI CACGTC 1 cut(s) 298
BtsCI GGATG 4 cut(s) 343, 742, 1213, 1237
BtsIMutI CAGTG 1 cut(s) 1323
BveI ACCTGC 1 cut(s) 591
Cac8I GCNNGC 1 cut(s) 1458
CaiI CAGNNNCTG 1 cut(s) 944
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 4 cut(s) 445, 688, 923, 1262
CseI GACGC 1 cut(s) 506
CviAII CATG 1 cut(s) 1123
DdeI CTNAG 7 cut(s) 483, 522, 647, 729, 1422, 1488, 1592
DpnI GATC 2 cut(s) 942, 1277
DpnII GATC 2 cut(s) 940, 1275
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 4 cut(s) 47, 185, 270, 1428
EarI CTCTTC 4 cut(s) 47, 185, 270, 1428
EciI GGCGGA 1 cut(s) 321
Eco130I CCWWGG 2 cut(s) 684, 1279
Eco31I GGTCTC 2 cut(s) 999, 1176
Eco47I GGWCC 3 cut(s) 445, 688, 923
EcoO109I RGGNCCY 1 cut(s) 688
EcoRII CCWGG 1 cut(s) 1041
EcoT14I CCWWGG 2 cut(s) 684, 1279
ErhI CCWWGG 2 cut(s) 684, 1279
Esp3I CGTCTC 1 cut(s) 1552
FaeI CATG 1 cut(s) 1126
FaiI YATR 7 cut(s) 653, 912, 1077, 1124, 1257, 1361, 1614
FaqI GGGAC 1 cut(s) 1495
FatI CATG 1 cut(s) 1122
FauI CCCGC 1 cut(s) 181
FblI GTMKAC 2 cut(s) 426, 971
Fnu4HI GCNGC 7 cut(s) 196, 238, 401, 621, 741, 870, 1173
FokI GGATG 4 cut(s) 350, 749, 1220, 1244
Fsp4HI GCNGC 7 cut(s) 196, 238, 401, 621, 741, 870, 1173
FspBI CTAG 2 cut(s) 744, 1286
GlaI GCGC 1 cut(s) 161
GluI GCNGC 7 cut(s) 196, 238, 401, 621, 741, 870, 1173
GsaI CCCAGC 3 cut(s) 561, 662, 1628
GsuI CTGGAG 2 cut(s) 410, 1023
HaeIII GGCC 3 cut(s) 116, 509, 1263
HapII CCGG 6 cut(s) 554, 607, 638, 827, 1292, 1551
HgaI GACGC 1 cut(s) 506
HhaI GCGC 1 cut(s) 162
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 1 cut(s) 1126
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 2 cut(s) 907, 1506
HindII GTYRAC 2 cut(s) 907, 1506
HpaI GTTAAC 2 cut(s) 907, 1506
HpaII CCGG 6 cut(s) 554, 607, 638, 827, 1292, 1551
HphI GGTGA 7 cut(s) 37, 143, 305, 344, 580, 586, 816
Hpy166II GTNNAC 8 cut(s) 151, 181, 301, 427, 604, 907, 972, 1506
Hpy188III TCNNGA 5 cut(s) 724, 784, 1002, 1143, 1154
Hpy8I GTNNAC 8 cut(s) 151, 181, 301, 427, 604, 907, 972, 1506
Hpy99I CGWCG 3 cut(s) 266, 287, 500
HpyCH4III ACNGT 7 cut(s) 293, 332, 904, 916, 991, 1327, 1510
HpyCH4IV ACGT 2 cut(s) 85, 297
HpyCH4V TGCA 9 cut(s) 211, 604, 699, 718, 740, 998, 1175, 1315, 1391
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 217, 226, 506
HpyF3I CTNAG 7 cut(s) 483, 522, 647, 729, 1422, 1488, 1592
HpySE526I ACGT 2 cut(s) 85, 297
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 1 cut(s) 1126
HspAI GCGC 1 cut(s) 160
KspAI GTTAAC 2 cut(s) 907, 1506
Kzo9I GATC 2 cut(s) 940, 1275
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 4 cut(s) 316, 492, 862, 877
Lsp1109I GCAGC 3 cut(s) 752, 856, 1159
LweI GCATC 3 cut(s) 727, 1007, 1147
MaeI CTAG 2 cut(s) 744, 1286
MaeII ACGT 2 cut(s) 85, 297
MaeIII GTNAC 7 cut(s) 293, 574, 664, 817, 898, 934, 1213
MalI GATC 2 cut(s) 942, 1277
MboI GATC 2 cut(s) 940, 1275
MflI RGATCY 2 cut(s) 940, 1275
MhlI GDGCHC 1 cut(s) 606
MluCI AATT 7 cut(s) 80, 323, 1025, 1033, 1138, 1364, 1416
MlyI GAGTC 5 cut(s) 260, 432, 1142, 1391, 1477
MspA1I CMGCKG 3 cut(s) 536, 662, 1172
MspI CCGG 6 cut(s) 554, 607, 638, 827, 1292, 1551
MspR9I CCNGG 4 cut(s) 608, 639, 1043, 1552
MvaI CCWGG 1 cut(s) 1043
MvnI CGCG 3 cut(s) 160, 403, 877
MwoI GCNNNNNNNGC 4 cut(s) 182, 217, 226, 506
NciI CCSGG 3 cut(s) 608, 639, 1552
NdeII GATC 2 cut(s) 940, 1275
NlaIII CATG 1 cut(s) 1126
NlaIV GGNNCC 4 cut(s) 363, 636, 690, 1443
NmuCI GTSAC 3 cut(s) 293, 574, 664
PciSI GCTCTTC 1 cut(s) 185
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 584
PfeI GAWTC 8 cut(s) 830, 977, 1019, 1129, 1196, 1309, 1376, 1394
PflMI CCANNNNNTGG 2 cut(s) 1015, 1192
PkrI GCNGC 7 cut(s) 197, 239, 402, 622, 742, 871, 1174
PleI GAGTC 5 cut(s) 260, 431, 1142, 1390, 1477
PpsI GAGTC 5 cut(s) 260, 431, 1142, 1390, 1477
PpuMI RGGWCCY 1 cut(s) 688
PshAI GACNNNNGTC 1 cut(s) 211
Psp5II RGGWCCY 1 cut(s) 688
Psp6I CCWGG 1 cut(s) 1041
PspFI CCCAGC 3 cut(s) 557, 658, 1624
PspGI CCWGG 1 cut(s) 1041
PspN4I GGNNCC 4 cut(s) 363, 636, 690, 1443
PspPI GGNCC 4 cut(s) 445, 688, 923, 1262
PspPPI RGGWCCY 1 cut(s) 688
PstI CTGCAG 2 cut(s) 213, 1393
PstNI CAGNNNCTG 1 cut(s) 944
PsuI RGATCY 2 cut(s) 940, 1275
PvuII CAGCTG 3 cut(s) 536, 662, 1172
SapI GCTCTTC 1 cut(s) 185
SatI GCNGC 7 cut(s) 196, 238, 401, 621, 741, 870, 1173
Sau3AI GATC 2 cut(s) 940, 1275
Sau96I GGNCC 4 cut(s) 445, 688, 923, 1262
SchI GAGTC 5 cut(s) 260, 432, 1142, 1391, 1477
ScrFI CCNGG 4 cut(s) 608, 639, 1043, 1552
SduI GDGCHC 1 cut(s) 606
SfaNI GCATC 3 cut(s) 727, 1007, 1147
SfcI CTRYAG 2 cut(s) 209, 1389
SinI GGWCC 3 cut(s) 445, 688, 923
SmlI CTYRAG 1 cut(s) 1100
SmoI CTYRAG 1 cut(s) 1100
Sse9I AATT 7 cut(s) 80, 323, 1025, 1033, 1138, 1364, 1416
SspMI CTAG 2 cut(s) 744, 1286
StyD4I CCNGG 4 cut(s) 606, 637, 1041, 1550
StyI CCWWGG 2 cut(s) 684, 1279
TaaI ACNGT 7 cut(s) 293, 332, 904, 916, 991, 1327, 1510
TaiI ACGT 2 cut(s) 88, 300
TaqI TCGA 2 cut(s) 456, 862
TasI AATT 7 cut(s) 80, 323, 1025, 1033, 1138, 1364, 1416
TauI GCSGC 4 cut(s) 198, 240, 403, 623
TfiI GAWTC 8 cut(s) 830, 977, 1019, 1129, 1196, 1309, 1376, 1394
TscAI CASTG 1 cut(s) 1330
TseFI GTSAC 3 cut(s) 293, 574, 664
TseI GCWGC 3 cut(s) 740, 869, 1172
Tsp45I GTSAC 3 cut(s) 293, 574, 664
TspDTI ATGAA 5 cut(s) 288, 392, 1086, 1111, 1266
TspGWI ACGGA 3 cut(s) 136, 205, 908
TspRI CASTG 1 cut(s) 1330
Van91I CCANNNNNTGG 2 cut(s) 1015, 1192
VneI GTGCAC 1 cut(s) 602
VpaK11BI GGWCC 3 cut(s) 445, 688, 923
XapI RAATTY 1 cut(s) 1138
XmiI GTMKAC 2 cut(s) 426, 971
XspI CTAG 2 cut(s) 744, 1286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.