Rw4G035510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0012534
Physical Location & Seq
Forward (+)
62324032 .. 62325991
1960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G035510.1

Sequence Viewer

Length: 1422 bp
ATGGACGACGACTCCGATGAAGAGGACGACGATGACGGTGGCGTGGACGGCGGAGATGAGGAGCTGGAATTGGACGGTGAGGATGACGAAGGCGAAGGTCTGTTGGTGCCGTTTGGGGAGATGAAGAAGTGGCTGGAGAAGAAGCCGCGTGGGTTCGGCGAAGGCAGAGTCTACGACACTCCGATTGAGGACCAACTGCTCGAAGAAATACAGGTTGAGACTTCCACTAAGCTCCAAAACGACGCCGTAAAGGCCAATCTTAAACCTCAGAAGAACACAGCTGATGAGGTGGTTGTTCCGGCTGGGTTTCGGGTGAGGGTGACGAACCTGCCGAAGAAGAAGAATGTGCACCGGGATTTGACTGCGGCGTTTAAGCTGGTTCCGGGTTTGCTGAGCATAAACCCAGCTGTGACTGGAAACAAGAAGACCAAGGACCCCATTTGCAAGGGTTTTGCTTTTGTGCATTTCAAGACTGAGAAGGATGCAGCTAGGTTTGTGGAAACATTTTCTTCGCAGACTATTACATTTGGGAAAGTTCAGAAGCAGATAAAATGCGAGGTGGTAACTTCACTGGATTCTGATGTGGAACAATCAAAATCTGCTCCTCGAATAGCTGCTCCGCGACTAAATGCTCTTAAACCCGTAACAGTTAACTATACTGTCCGTGGTCCTAAACCAGCAACAGATCCTGCTACTAAAACCTCAACCAATAAGTCTACTGATTCCCAACTGACTGTTTCTGCATCTGGAGACCAGAAAGTGGATTCTGAATTGGATAATTCTTCCCTGGACACATTGGAGGAGACTGTATCTGATGAATATGATGGCTCTGATGTTGAAATCCTTGAGCCAGAACTGGAAGATTTCATGGTGAATCTTAAAAATTCAGGAGACTATCTTGATGCTCAACTGACAGCTGCATTTGGAGACCAGAAGGTGGATTCTGACTTGGATGATGTTACGCTGGACACATTGGATGAGACTATATCTGATGATGAATATGATGGCCCTGATGTTGAGATCCTTGGACCAGAACCGGAAGATTTCAAGGAGAATCTGCAAACCTCCACTGTGTCAGACCTAAATGGTGGAGACAGCAGTATCATAGAATTAACGACAGAATCCGAGTCTTCTGCAGATTCGTCTTCCTCAAAGCAGTTAATTGCTAAGAGTAAAGAAGAGAAGGTTCCTCGCAAAAAGAAAGCTGTGAAAGGGAAAGAAGAAAGGACTCCTAAGAAGAAGTTAACAGTGAAAGAAAGCACCAAAAGCACCAAAAGTTCCAAAGTTGGTCGTCTCCGGGTCTTCCAAGAGGTAATTTGTTGCATTTTGCTGGAGTTAAAGGTCAAGGAGAAGGCTGTGCTTAGTGATGTGTTCTCGAAATATGGGTTAAACCCAGCTTTGGCTTCAAATGAAGATAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

473

Amino Acids

51.77

Weight (kDa)

4.56

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012534)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70200
fragaria_vesca FvH4_4g34980 FvH4_5g29371
malus_domestica MD16G1087500.v1.1
prunus_persica Prupe.1G259500_v2.0.a1
pyrus_communis pycom13g07510 pycom16g07510
rosa_chinensis RchiOBHm_Chr4g0444501
rosa_laevigata RLG00000005829
rosa_multiflora Rmu_co8304031.1_g000001 Rmu_sc0003839.1_g000008 Rmu_sc0035747.1_g000002
rosa_roxburghii Rroxscaffold_5G00384980
rosa_rugosa Rorug04G0353200
rosa_samantha Rh4AG413400 Rh4BG424900 Rh4CG439500 Rh4DG420400
rosa_wichuraiana Rw4G035510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 336
AccB1I GGYRCC 1 cut(s) 106
AccB7I CCANNNNNTGG 2 cut(s) 760, 937
AccI GTMKAC 2 cut(s) 171, 716
AccII CGCG 2 cut(s) 148, 622
AciI CCGC 4 cut(s) 51, 146, 365, 620
AclWI GGATC 2 cut(s) 680, 1015
AcsI RAATTY 1 cut(s) 883
AcyI GRCGYC 1 cut(s) 243
AfiI CCNNNNNNNGG 3 cut(s) 760, 937, 1399
AgsI TTSAA 4 cut(s) 469, 839, 1048, 1407
AjnI CCWGG 1 cut(s) 786
Alw21I GWGCWC 1 cut(s) 351
Alw26I GTCTC 8 cut(s) 212, 744, 797, 885, 921, 974, 1086, 1298
Alw44I GTGCAC 1 cut(s) 347
AlwI GGATC 2 cut(s) 680, 1015
AlwNI CAGNNNCTG 1 cut(s) 689
AoxI GGCC 2 cut(s) 252, 1006
ApaLI GTGCAC 1 cut(s) 347
ApeKI GCWGC 3 cut(s) 485, 614, 917
ApoI RAATTY 1 cut(s) 883
ArsI GACNNNNNNTTYG 2 cut(s) 153, 185
AspS9I GGNCC 5 cut(s) 190, 433, 668, 1007, 1028
AsuC2I CCSGG 3 cut(s) 353, 384, 1298
AsuHPI GGTGA 4 cut(s) 89, 325, 331, 883
AvaII GGWCC 4 cut(s) 190, 433, 668, 1028
BaeGI GKGCMC 1 cut(s) 351
BaeI ACNNNNGTAYC 2 cut(s) 1084, 1117
BanI GGYRCC 1 cut(s) 106
BbsI GAAGAC 4 cut(s) 431, 1122, 1137, 1294
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 3 cut(s) 497, 601, 904
BccI CCATC 2 cut(s) 818, 998
BceAI ACGGC 3 cut(s) 64, 94, 230
BcgI CGANNNNNNTGC 2 cut(s) 1115, 1149
BciT130I CCWGG 1 cut(s) 788
BcnI CCSGG 3 cut(s) 353, 384, 1298
BcoDI GTCTC 8 cut(s) 212, 744, 797, 885, 921, 974, 1086, 1298
BfaI CTAG 1 cut(s) 489
BfmI CTRYAG 1 cut(s) 1134
BfuAI ACCTGC 1 cut(s) 336
BglI GCCNNNNNGGC 1 cut(s) 251
BisI GCNGC 5 cut(s) 146, 366, 486, 615, 918
BlpI GCTNAGC 1 cut(s) 392
BlsI GCNGC 5 cut(s) 147, 367, 487, 616, 919
Bme1390I CCNGG 4 cut(s) 353, 384, 788, 1298
Bme18I GGWCC 4 cut(s) 190, 433, 668, 1028
BmgT120I GGNCC 5 cut(s) 190, 433, 668, 1007, 1028
BmiI GGNNCC 4 cut(s) 108, 381, 435, 1188
BmrFI CCNGG 4 cut(s) 353, 384, 788, 1298
BmsI GCATC 3 cut(s) 472, 752, 892
BpiI GAAGAC 4 cut(s) 431, 1122, 1137, 1294
BpmI CTGGAG 3 cut(s) 155, 768, 1352
Bpu1102I GCTNAGC 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 866
BpuMI CCSGG 3 cut(s) 353, 384, 1298
BsaHI GRCGYC 1 cut(s) 243
BsaI GGTCTC 2 cut(s) 744, 921
BsaJI CCNNGG 4 cut(s) 429, 664, 786, 1024
BsaWI WCCGGW 1 cut(s) 1036
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 3 cut(s) 760, 937, 1399
Bse1I ACTGG 3 cut(s) 418, 576, 861
BseBI CCWGG 1 cut(s) 788
BseDI CCNNGG 4 cut(s) 429, 664, 786, 1024
BseGI GGATG 4 cut(s) 88, 487, 958, 982
BseLI CCNNNNNNNGG 3 cut(s) 760, 937, 1399
BseMII CTCAG 3 cut(s) 281, 383, 465
BseNI ACTGG 3 cut(s) 418, 576, 861
BseRI GAGGAG 3 cut(s) 74, 594, 815
BseSI GKGCMC 1 cut(s) 351
BseXI GCAGC 3 cut(s) 497, 601, 904
BseYI CCCAGC 3 cut(s) 302, 403, 1393
Bsh1236I CGCG 2 cut(s) 148, 622
BshFI GGCC 2 cut(s) 254, 1008
BshNI GGYRCC 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 351
BsiSI CCGG 5 cut(s) 299, 352, 383, 1037, 1297
BslI CCNNNNNNNGG 3 cut(s) 760, 937, 1399
BsmAI GTCTC 8 cut(s) 212, 744, 797, 885, 921, 974, 1086, 1298
BsmBI CGTCTC 1 cut(s) 1298
BsnI GGCC 2 cut(s) 254, 1008
Bso31I GGTCTC 2 cut(s) 744, 921
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 2 cut(s) 685, 1020
Bsp1720I GCTNAGC 1 cut(s) 392
BspACI CCGC 4 cut(s) 51, 146, 365, 620
BspANI GGCC 2 cut(s) 254, 1008
BspCNI CTCAG 3 cut(s) 280, 384, 466
BspFNI CGCG 2 cut(s) 148, 622
BspLI GGNNCC 4 cut(s) 108, 381, 435, 1188
BspMAI CTGCAG 1 cut(s) 1138
BspMI ACCTGC 1 cut(s) 336
BspPI GGATC 2 cut(s) 680, 1015
BspT107I GGYRCC 1 cut(s) 106
BspTNI GGTCTC 2 cut(s) 744, 921
BsrI ACTGG 3 cut(s) 418, 576, 861
BssECI CCNNGG 4 cut(s) 429, 664, 786, 1024
BssMI GATC 2 cut(s) 685, 1020
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 2 cut(s) 429, 1024
Bst2UI CCWGG 1 cut(s) 788
Bst4CI ACNGT 8 cut(s) 38, 77, 649, 661, 736, 808, 1072, 1249
Bst6I CTCTTC 2 cut(s) 15, 1173
BstACI GRCGYC 1 cut(s) 243
BstDEI CTNAG 7 cut(s) 228, 267, 392, 474, 1167, 1233, 1361
BstDSI CCRYGG 1 cut(s) 664
BstF5I GGATG 4 cut(s) 88, 487, 958, 982
BstFNI CGCG 2 cut(s) 148, 622
BstKTI GATC 2 cut(s) 688, 1023
BstMAI GTCTC 8 cut(s) 212, 744, 797, 885, 921, 974, 1086, 1298
BstMBI GATC 2 cut(s) 685, 1020
BstMWI GCNNNNNNNGC 3 cut(s) 48, 251, 1266
BstNI CCWGG 1 cut(s) 788
BstSCI CCNGG 4 cut(s) 351, 382, 786, 1296
BstSFI CTRYAG 1 cut(s) 1134
BstSLI GKGCMC 1 cut(s) 351
BstUI CGCG 2 cut(s) 148, 622
BstV1I GCAGC 3 cut(s) 497, 601, 904
BstV2I GAAGAC 4 cut(s) 431, 1122, 1137, 1294
BstX2I RGATCY 2 cut(s) 685, 1020
BstYI RGATCY 2 cut(s) 685, 1020
BsuRI GGCC 2 cut(s) 254, 1008
BtgI CCRYGG 1 cut(s) 664
BtsCI GGATG 4 cut(s) 88, 487, 958, 982
BtsIMutI CAGTG 3 cut(s) 569, 1068, 1254
BveI ACCTGC 1 cut(s) 336
CaiI CAGNNNCTG 1 cut(s) 689
Cfr13I GGNCC 5 cut(s) 190, 433, 668, 1007, 1028
CseI GACGC 1 cut(s) 251
CviAII CATG 1 cut(s) 868
DdeI CTNAG 7 cut(s) 228, 267, 392, 474, 1167, 1233, 1361
DpnI GATC 2 cut(s) 687, 1022
DpnII GATC 2 cut(s) 685, 1020
Eam1104I CTCTTC 2 cut(s) 15, 1173
EarI CTCTTC 2 cut(s) 15, 1173
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 429, 1024
Eco31I GGTCTC 2 cut(s) 744, 921
Eco47I GGWCC 4 cut(s) 190, 433, 668, 1028
EcoO109I RGGNCCY 1 cut(s) 433
EcoRII CCWGG 1 cut(s) 786
EcoT14I CCWWGG 2 cut(s) 429, 1024
ErhI CCWWGG 2 cut(s) 429, 1024
Esp3I CGTCTC 1 cut(s) 1298
FaeI CATG 1 cut(s) 871
FaiI YATR 8 cut(s) 398, 657, 822, 869, 986, 1002, 1106, 1383
FatI CATG 1 cut(s) 867
FblI GTMKAC 2 cut(s) 171, 716
Fnu4HI GCNGC 5 cut(s) 146, 366, 486, 615, 918
FokI GGATG 4 cut(s) 95, 494, 965, 989
Fsp4HI GCNGC 5 cut(s) 146, 366, 486, 615, 918
FspBI CTAG 1 cut(s) 489
GluI GCNGC 5 cut(s) 146, 366, 486, 615, 918
GsaI CCCAGC 3 cut(s) 306, 407, 1397
GsuI CTGGAG 3 cut(s) 155, 768, 1352
HaeIII GGCC 2 cut(s) 254, 1008
HapII CCGG 5 cut(s) 299, 352, 383, 1037, 1297
HgaI GACGC 1 cut(s) 251
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 1 cut(s) 871
HincII GTYRAC 2 cut(s) 652, 1245
HindII GTYRAC 2 cut(s) 652, 1245
HpaI GTTAAC 2 cut(s) 652, 1245
HpaII CCGG 5 cut(s) 299, 352, 383, 1037, 1297
HphI GGTGA 4 cut(s) 89, 325, 331, 883
Hpy166II GTNNAC 6 cut(s) 46, 172, 349, 652, 717, 1245
Hpy188III TCNNGA 5 cut(s) 469, 747, 888, 899, 1375
Hpy8I GTNNAC 6 cut(s) 46, 172, 349, 652, 717, 1245
Hpy99I CGWCG 3 cut(s) 11, 32, 245
HpyAV CCTTC 7 cut(s) 83, 89, 155, 472, 928, 1177, 1345
HpyCH4III ACNGT 8 cut(s) 38, 77, 649, 661, 736, 808, 1072, 1249
HpyCH4V TGCA 9 cut(s) 349, 444, 463, 485, 743, 920, 1060, 1136, 1323
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 251, 1266
HpyF3I CTNAG 7 cut(s) 228, 267, 392, 474, 1167, 1233, 1361
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 1 cut(s) 871
KspAI GTTAAC 2 cut(s) 652, 1245
Kzo9I GATC 2 cut(s) 685, 1020
LmnI GCTCC 4 cut(s) 61, 237, 607, 622
Lsp1109I GCAGC 3 cut(s) 497, 601, 904
LweI GCATC 3 cut(s) 472, 752, 892
MaeI CTAG 1 cut(s) 489
MaeIII GTNAC 5 cut(s) 319, 409, 562, 643, 958
MalI GATC 2 cut(s) 687, 1022
MboI GATC 2 cut(s) 685, 1020
MflI RGATCY 2 cut(s) 685, 1020
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 7 cut(s) 68, 770, 778, 883, 1109, 1161, 1314
MlyI GAGTC 4 cut(s) 5, 177, 1136, 1222
MspA1I CMGCKG 3 cut(s) 281, 407, 917
MspI CCGG 5 cut(s) 299, 352, 383, 1037, 1297
MspR9I CCNGG 4 cut(s) 353, 384, 788, 1298
MvaI CCWGG 1 cut(s) 788
MvnI CGCG 2 cut(s) 148, 622
MwoI GCNNNNNNNGC 3 cut(s) 48, 251, 1266
NciI CCSGG 3 cut(s) 353, 384, 1298
NdeII GATC 2 cut(s) 685, 1020
NlaIII CATG 1 cut(s) 871
NlaIV GGNNCC 4 cut(s) 108, 381, 435, 1188
NmuCI GTSAC 2 cut(s) 319, 409
PcsI WCGNNNNNNNCGW 2 cut(s) 12, 329
PfeI GAWTC 8 cut(s) 575, 722, 764, 874, 941, 1054, 1121, 1139
PflMI CCANNNNNTGG 2 cut(s) 760, 937
PkrI GCNGC 5 cut(s) 147, 367, 487, 616, 919
PleI GAGTC 4 cut(s) 5, 176, 1135, 1222
PpsI GAGTC 4 cut(s) 5, 176, 1135, 1222
PpuMI RGGWCCY 1 cut(s) 433
Psp5II RGGWCCY 1 cut(s) 433
Psp6I CCWGG 1 cut(s) 786
PspFI CCCAGC 3 cut(s) 302, 403, 1393
PspGI CCWGG 1 cut(s) 786
PspN4I GGNNCC 4 cut(s) 108, 381, 435, 1188
PspPI GGNCC 5 cut(s) 190, 433, 668, 1007, 1028
PspPPI RGGWCCY 1 cut(s) 433
PstI CTGCAG 1 cut(s) 1138
PstNI CAGNNNCTG 1 cut(s) 689
PsuI RGATCY 2 cut(s) 685, 1020
PvuII CAGCTG 3 cut(s) 281, 407, 917
SatI GCNGC 5 cut(s) 146, 366, 486, 615, 918
Sau3AI GATC 2 cut(s) 685, 1020
Sau96I GGNCC 5 cut(s) 190, 433, 668, 1007, 1028
SchI GAGTC 4 cut(s) 5, 177, 1136, 1222
ScrFI CCNGG 4 cut(s) 353, 384, 788, 1298
SduI GDGCHC 1 cut(s) 351
SfaNI GCATC 3 cut(s) 472, 752, 892
SfcI CTRYAG 1 cut(s) 1134
SinI GGWCC 4 cut(s) 190, 433, 668, 1028
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
Sse9I AATT 7 cut(s) 68, 770, 778, 883, 1109, 1161, 1314
SsiI CCGC 4 cut(s) 51, 146, 365, 620
SspMI CTAG 1 cut(s) 489
StyD4I CCNGG 4 cut(s) 351, 382, 786, 1296
StyI CCWWGG 2 cut(s) 429, 1024
TaaI ACNGT 8 cut(s) 38, 77, 649, 661, 736, 808, 1072, 1249
TaqI TCGA 3 cut(s) 201, 607, 1376
TasI AATT 7 cut(s) 68, 770, 778, 883, 1109, 1161, 1314
TauI GCSGC 2 cut(s) 148, 368
TfiI GAWTC 8 cut(s) 575, 722, 764, 874, 941, 1054, 1121, 1139
TscAI CASTG 3 cut(s) 576, 1075, 1254
TseFI GTSAC 2 cut(s) 319, 409
TseI GCWGC 3 cut(s) 485, 614, 917
Tsp45I GTSAC 2 cut(s) 319, 409
TspDTI ATGAA 5 cut(s) 33, 137, 831, 856, 1011
TspGWI ACGGA 1 cut(s) 653
TspRI CASTG 3 cut(s) 576, 1075, 1254
Van91I CCANNNNNTGG 2 cut(s) 760, 937
VneI GTGCAC 1 cut(s) 347
VpaK11BI GGWCC 4 cut(s) 190, 433, 668, 1028
XapI RAATTY 1 cut(s) 883
XmiI GTMKAC 2 cut(s) 171, 716
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.