AT1G70210

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012007
Physical Location & Seq
Forward (+)
26439556 .. 26443007
3452 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70210.1

Sequence Viewer

Length: 1020 bp
ATGAGGAGTTACCGTTTTAGTGATTATCTACACATGTCTGTTTCATTCTCTAACGATATGGATTTGTTTTGTGGAGAAGACTCCGGTGTGTTTTCCGGTGAGTCAACGGTTGATTTCTCGTCTTCCGAGGTTGATTCATGGCCTGGTGATTCTATCGCTTGTTTTATCGAAGACGAGCGTCACTTCGTTCCTGGACATGATTATCTCTCTAGATTTCAAACTCGATCTCTCGATGCTTCCGCTAGAGAAGATTCCGTCGCATGGATTCTCAAGGTACAAGCGTATTATAACTTTCAGCCTTTAACGGCGTACCTCGCCGTTAACTATATGGATCGGTTTCTTTACGCTCGTCGATTACCGGAAACGAGTGGTTGGCCAATGCAACTTTTAGCAGTGGCATGCTTGTCTTTAGCTGCAAAGATGGAGGAAATTCTCGTTCCTTCTCTTTTTGATTTTCAGGTTGCAGGAGTGAAGTATTTATTTGAAGCAAAAACTATAAAAAGAATGGAACTTCTTGTTCTAAGTGTGTTAGATTGGAGACTAAGATCGGTTACACCGTTTGATTTCATTAGCTTCTTTGCTTACAAGATCGATCCTTCGGGTACCTTTCTCGGGTTCTTTATCTCCCATGCTACAGAGATTATACTCTCCAACATAAAAGAAGCGAGCTTTCTTGAGTACTGGCCATCGAGTATAGCTGCAGCCGCGATTCTCTGTGTAGCGAACGAGTTACCTTCTCTATCCTCTGTTGTCAATCCCCACGAGAGCCCTGAGACTTGGTGTGACGGATTGAGCAAAGAGAAGATAGTGAGATGCTATAGACTGATGAAAGCGATGGCCATCGAGAATAACCGGTTAAATACACCAAAAGTGATAGCAAAGCTTCGAGTGAGTGTAAGGGCATCATCGACGTTAACAAGGCCAAGTGATGAATCCTCTTTCTCATCCTCTTCTCCTTGTAAAAGGAGAAAATTAAGTGGCTATTCATGGGTAGGTGATGAAACATCTACCTCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

339

Amino Acids

38.28

Weight (kDa)

5.51

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 51 - 182 5.4e-33 Cyclin, N-terminal domain
Cyclin_C PF02984 184 - 299 1.4e-11 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70210
fragaria_vesca FvH4_4g34970
malus_domestica MD13G1087200.v1.1 MD16G1087700.v1.1
prunus_persica Prupe.1G259100_v2.0.a1 Prupe.1G259100_v2.0.a1
pyrus_communis pycom13g07520 pycom16g07520
rosa_chinensis RchiOBHm_Chr4g0444481
rosa_laevigata RLG00000005830
rosa_multiflora Rmu_co8344649.1_g000001
rosa_roxburghii Rroxscaffold_5G00384970
rosa_rugosa Rorug04G0353100 Rorug04G0353100
rosa_samantha Rh4AG413300 Rh4BG424800 Rh4CG439400 Rh4DG420300
rosa_wichuraiana Rw4G035500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 288
Acc65I GGTACC 1 cut(s) 602
AccB1I GGYRCC 1 cut(s) 602
AccII CGCG 1 cut(s) 707
AciI CCGC 2 cut(s) 240, 705
AclWI GGATC 2 cut(s) 339, 587
AcoI YGGCCR 3 cut(s) 374, 683, 837
AcsI RAATTY 1 cut(s) 429
AfaI GTAC 4 cut(s) 276, 311, 604, 680
AfiI CCNNNNNNNGG 2 cut(s) 261, 612
AflIII ACRYGT 1 cut(s) 33
AgeI ACCGGT 1 cut(s) 852
AgsI TTSAA 2 cut(s) 218, 485
AjnI CCWGG 2 cut(s) 142, 190
AluBI AGCT 5 cut(s) 413, 573, 669, 698, 883
AluI AGCT 5 cut(s) 413, 573, 669, 698, 883
Alw26I GTCTC 2 cut(s) 532, 767
AlwI GGATC 2 cut(s) 339, 587
Ama87I CYCGRG 1 cut(s) 611
AoxI GGCC 5 cut(s) 140, 374, 683, 837, 920
ApeKI GCWGC 3 cut(s) 413, 698, 701
ApoI RAATTY 1 cut(s) 429
AsiGI ACCGGT 1 cut(s) 852
Asp718I GGTACC 1 cut(s) 602
AsuHPI GGTGA 3 cut(s) 110, 158, 1007
AvaI CYCGRG 1 cut(s) 611
BaeI ACNNNNGTAYC 2 cut(s) 266, 299
BalI TGGCCA 3 cut(s) 376, 685, 839
BanI GGYRCC 1 cut(s) 602
BanII GRGCYC 1 cut(s) 770
BauI CACGAG 1 cut(s) 761
BbsI GAAGAC 3 cut(s) 84, 114, 177
BbvI GCAGC 3 cut(s) 400, 685, 713
BccI CCATC 4 cut(s) 415, 694, 829, 848
BceAI ACGGC 2 cut(s) 302, 321
BciT130I CCWGG 2 cut(s) 144, 192
BcoDI GTCTC 2 cut(s) 532, 767
BfaI CTAG 2 cut(s) 210, 243
BfmI CTRYAG 3 cut(s) 633, 699, 817
BisI GCNGC 4 cut(s) 414, 699, 702, 705
BlsI GCNGC 4 cut(s) 415, 700, 703, 706
BmcAI AGTACT 1 cut(s) 680
Bme1390I CCNGG 2 cut(s) 144, 192
BmeT110I CYCGRG 1 cut(s) 611
BmiI GGNNCC 1 cut(s) 604
BmrFI CCNGG 2 cut(s) 144, 192
BmsI GCATC 3 cut(s) 223, 803, 911
BoxI GACNNNNGTC 1 cut(s) 177
BpiI GAAGAC 3 cut(s) 84, 114, 177
BpuEI CTTGAG 2 cut(s) 254, 695
Bsa29I ATCGAT 1 cut(s) 591
BsaBI GATNNNNATC 1 cut(s) 839
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 4 cut(s) 83, 95, 358, 852
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 612
Bse118I RCCGGY 1 cut(s) 852
Bse1I ACTGG 1 cut(s) 686
Bse8I GATNNNNATC 1 cut(s) 839
BseBI CCWGG 2 cut(s) 144, 192
BseCI ATCGAT 1 cut(s) 591
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 944
BseJI GATNNNNATC 1 cut(s) 839
BseLI CCNNNNNNNGG 2 cut(s) 261, 612
BseMII CTCAG 1 cut(s) 762
BseNI ACTGG 1 cut(s) 686
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 3 cut(s) 400, 685, 713
Bsh1236I CGCG 1 cut(s) 707
BshFI GGCC 5 cut(s) 142, 376, 685, 839, 922
BshNI GGYRCC 1 cut(s) 602
BshTI ACCGGT 1 cut(s) 852
BshVI ATCGAT 1 cut(s) 591
BsiHKCI CYCGRG 1 cut(s) 611
BsiSI CCGG 4 cut(s) 84, 96, 359, 853
BslI CCNNNNNNNGG 2 cut(s) 261, 612
BsmAI GTCTC 2 cut(s) 532, 767
BsnI GGCC 5 cut(s) 142, 376, 685, 839, 922
BsoBI CYCGRG 1 cut(s) 611
Bsp1286I GDGCHC 1 cut(s) 770
Bsp143I GATC 5 cut(s) 224, 331, 545, 588, 592
BspACI CCGC 2 cut(s) 240, 705
BspANI GGCC 5 cut(s) 142, 376, 685, 839, 922
BspCNI CTCAG 1 cut(s) 763
BspDI ATCGAT 1 cut(s) 591
BspFNI CGCG 1 cut(s) 707
BspLI GGNNCC 1 cut(s) 604
BspMAI CTGCAG 1 cut(s) 703
BspPI GGATC 2 cut(s) 339, 587
BspT107I GGYRCC 1 cut(s) 602
BsrFI RCCGGY 1 cut(s) 852
BsrI ACTGG 1 cut(s) 686
BssAI RCCGGY 1 cut(s) 852
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 5 cut(s) 224, 331, 545, 588, 592
BssSI CACGAG 1 cut(s) 761
Bst2BI CACGAG 1 cut(s) 761
Bst2UI CCWGG 2 cut(s) 144, 192
Bst4CI ACNGT 3 cut(s) 14, 109, 558
Bst6I CTCTTC 1 cut(s) 955
BstC8I GCNNGC 2 cut(s) 400, 667
BstDEI CTNAG 3 cut(s) 521, 542, 771
BstF5I GGATG 1 cut(s) 944
BstFNI CGCG 1 cut(s) 707
BstKTI GATC 5 cut(s) 227, 334, 548, 591, 595
BstMAI GTCTC 2 cut(s) 532, 767
BstMBI GATC 5 cut(s) 224, 331, 545, 588, 592
BstMWI GCNNNNNNNGC 2 cut(s) 314, 704
BstNI CCWGG 2 cut(s) 144, 192
BstNSI RCATGY 2 cut(s) 37, 402
BstPAI GACNNNNGTC 1 cut(s) 177
BstSCI CCNGG 2 cut(s) 142, 190
BstSFI CTRYAG 3 cut(s) 633, 699, 817
BstUI CGCG 1 cut(s) 707
BstV1I GCAGC 3 cut(s) 400, 685, 713
BstV2I GAAGAC 3 cut(s) 84, 114, 177
Bsu15I ATCGAT 1 cut(s) 591
BsuRI GGCC 5 cut(s) 142, 376, 685, 839, 922
BsuTUI ATCGAT 1 cut(s) 591
BtgZI GCGATG 1 cut(s) 848
BtsCI GGATG 1 cut(s) 944
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 1 cut(s) 399
Cac8I GCNNGC 2 cut(s) 400, 667
Cfr10I RCCGGY 1 cut(s) 852
ClaI ATCGAT 1 cut(s) 591
CseI GACGC 1 cut(s) 167
Csp6I GTAC 4 cut(s) 275, 310, 603, 679
CspAI ACCGGT 1 cut(s) 852
CviAII CATG 7 cut(s) 34, 138, 197, 261, 399, 629, 987
CviQI GTAC 4 cut(s) 275, 310, 603, 679
DdeI CTNAG 3 cut(s) 521, 542, 771
DpnI GATC 5 cut(s) 226, 333, 547, 590, 594
DpnII GATC 5 cut(s) 224, 331, 545, 588, 592
EaeI YGGCCR 3 cut(s) 374, 683, 837
Eam1104I CTCTTC 1 cut(s) 955
EarI CTCTTC 1 cut(s) 955
Eco24I GRGCYC 1 cut(s) 770
Eco88I CYCGRG 1 cut(s) 611
EcoRII CCWGG 2 cut(s) 142, 190
EcoT38I GRGCYC 1 cut(s) 770
FaeI CATG 7 cut(s) 37, 141, 200, 264, 402, 632, 990
FatI CATG 7 cut(s) 33, 137, 196, 260, 398, 628, 986
Fnu4HI GCNGC 4 cut(s) 414, 699, 702, 705
FokI GGATG 1 cut(s) 931
FriOI GRGCYC 1 cut(s) 770
Fsp4HI GCNGC 4 cut(s) 414, 699, 702, 705
FspBI CTAG 2 cut(s) 210, 243
GluI GCNGC 4 cut(s) 414, 699, 702, 705
HaeIII GGCC 5 cut(s) 142, 376, 685, 839, 922
HapII CCGG 4 cut(s) 84, 96, 359, 853
HgaI GACGC 1 cut(s) 167
Hin1II CATG 7 cut(s) 37, 141, 200, 264, 402, 632, 990
HincII GTYRAC 3 cut(s) 105, 322, 915
HindII GTYRAC 3 cut(s) 105, 322, 915
HindIII AAGCTT 1 cut(s) 881
HinfI GANTC 8 cut(s) 80, 101, 134, 149, 251, 265, 709, 932
HpaI GTTAAC 2 cut(s) 322, 915
HpaII CCGG 4 cut(s) 84, 96, 359, 853
HphI GGTGA 3 cut(s) 110, 158, 1007
Hpy166II GTNNAC 3 cut(s) 105, 322, 915
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 4 cut(s) 210, 230, 674, 844
Hpy8I GTNNAC 3 cut(s) 105, 322, 915
Hpy99I CGWCG 3 cut(s) 260, 354, 913
HpyAV CCTTC 3 cut(s) 450, 606, 744
HpyCH4III ACNGT 3 cut(s) 14, 109, 558
HpyCH4IV ACGT 1 cut(s) 911
HpyCH4V TGCA 4 cut(s) 382, 416, 464, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 704
HpyF3I CTNAG 3 cut(s) 521, 542, 771
HpySE526I ACGT 1 cut(s) 911
Hsp92II CATG 7 cut(s) 37, 141, 200, 264, 402, 632, 990
KpnI GGTACC 1 cut(s) 606
KspAI GTTAAC 2 cut(s) 322, 915
Kzo9I GATC 5 cut(s) 224, 331, 545, 588, 592
Lsp1109I GCAGC 3 cut(s) 400, 685, 713
LweI GCATC 3 cut(s) 223, 803, 911
MaeI CTAG 2 cut(s) 210, 243
MaeII ACGT 1 cut(s) 911
MaeIII GTNAC 5 cut(s) 8, 179, 550, 729, 782
MalI GATC 5 cut(s) 226, 333, 547, 590, 594
MboI GATC 5 cut(s) 224, 331, 545, 588, 592
MboII GAAGA 6 cut(s) 89, 114, 182, 260, 814, 942
MhlI GDGCHC 1 cut(s) 770
MlsI TGGCCA 3 cut(s) 376, 685, 839
MluCI AATT 3 cut(s) 429, 971, 1015
MluNI TGGCCA 3 cut(s) 376, 685, 839
MlyI GAGTC 2 cut(s) 74, 110
MmeI TCCRAC 1 cut(s) 675
MnlI CCTC 6 cut(s) 121, 323, 418, 754, 946, 958
Mox20I TGGCCA 3 cut(s) 376, 685, 839
MscI TGGCCA 3 cut(s) 376, 685, 839
MseI TTAA 6 cut(s) 302, 321, 857, 914, 974, 1018
Msp20I TGGCCA 3 cut(s) 376, 685, 839
MspI CCGG 4 cut(s) 84, 96, 359, 853
MspR9I CCNGG 2 cut(s) 144, 192
MvaI CCWGG 2 cut(s) 144, 192
MvnI CGCG 1 cut(s) 707
MwoI GCNNNNNNNGC 2 cut(s) 314, 704
NdeII GATC 5 cut(s) 224, 331, 545, 588, 592
NlaIII CATG 7 cut(s) 37, 141, 200, 264, 402, 632, 990
NlaIV GGNNCC 1 cut(s) 604
NmuCI GTSAC 2 cut(s) 179, 782
NspI RCATGY 2 cut(s) 37, 402
PaeI GCATGC 1 cut(s) 402
PciI ACATGT 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 554
PfeI GAWTC 6 cut(s) 134, 149, 251, 265, 709, 932
PfoI TCCNGGA 1 cut(s) 190
PinAI ACCGGT 1 cut(s) 852
PkrI GCNGC 4 cut(s) 415, 700, 703, 706
PleI GAGTC 2 cut(s) 74, 109
PpsI GAGTC 2 cut(s) 74, 109
PscI ACATGT 1 cut(s) 33
PshAI GACNNNNGTC 1 cut(s) 177
PsiI TTATAA 1 cut(s) 288
Psp6I CCWGG 2 cut(s) 142, 190
PspGI CCWGG 2 cut(s) 142, 190
PspN4I GGNNCC 1 cut(s) 604
PstI CTGCAG 1 cut(s) 703
RsaI GTAC 4 cut(s) 276, 311, 604, 680
RsaNI GTAC 4 cut(s) 275, 310, 603, 679
SaqAI TTAA 6 cut(s) 302, 321, 857, 914, 974, 1018
SatI GCNGC 4 cut(s) 414, 699, 702, 705
Sau3AI GATC 5 cut(s) 224, 331, 545, 588, 592
ScaI AGTACT 1 cut(s) 680
SchI GAGTC 2 cut(s) 74, 110
ScrFI CCNGG 2 cut(s) 144, 192
SduI GDGCHC 1 cut(s) 770
SfaNI GCATC 3 cut(s) 223, 803, 911
SfcI CTRYAG 3 cut(s) 633, 699, 817
SmlI CTYRAG 2 cut(s) 269, 674
SmoI CTYRAG 2 cut(s) 269, 674
SphI GCATGC 1 cut(s) 402
Sse9I AATT 3 cut(s) 429, 971, 1015
SsiI CCGC 2 cut(s) 240, 705
SspMI CTAG 2 cut(s) 210, 243
StyD4I CCNGG 2 cut(s) 142, 190
TaaI ACNGT 3 cut(s) 14, 109, 558
TaiI ACGT 1 cut(s) 914
TaqI TCGA 9 cut(s) 168, 223, 231, 352, 591, 689, 843, 886, 908
TasI AATT 3 cut(s) 429, 971, 1015
TatI WGTACW 1 cut(s) 678
TauI GCSGC 1 cut(s) 707
TfiI GAWTC 6 cut(s) 134, 149, 251, 265, 709, 932
Tru1I TTAA 6 cut(s) 302, 321, 857, 914, 974, 1018
Tru9I TTAA 6 cut(s) 302, 321, 857, 914, 974, 1018
TscAI CASTG 1 cut(s) 399
TseFI GTSAC 2 cut(s) 179, 782
TseI GCWGC 3 cut(s) 413, 698, 701
Tsp45I GTSAC 2 cut(s) 179, 782
TspDTI ATGAA 7 cut(s) 33, 126, 556, 842, 945, 975, 1014
TspGWI ACGGA 2 cut(s) 244, 801
TspRI CASTG 1 cut(s) 399
XapI RAATTY 1 cut(s) 429
XbaI TCTAGA 1 cut(s) 209
XceI RCATGY 2 cut(s) 37, 402
XspI CTAG 2 cut(s) 210, 243
ZrmI AGTACT 1 cut(s) 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.