Rh4BG424800

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0012007
Physical Location & Seq
Reverse (-)
56914650 .. 56918621
3972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG424800.1

Sequence Viewer

Length: 762 bp
ATGTATCATGATTATACTAGAAGTAGTTTTACTAATGATATGTGCTTACTTTGTTTAATGTTTCAGCAAGCAAATGGGTGGCCAATGCAACTTTTAAGTGTTGCATGCTTGTCCTTAGCTGCCAAGATGGAGGAACCTCTGGTTCCCTCGTTGTTGGATCTGCAGGTTGAAGGTGCGAAGTTTATTTTCGAACCCAGAACAATCCGAAGAATGGAGCTTCTAGTGCTGAGTGTTTTGGACTGGAGGCTACGATCTGTAACACCATTCTGCTTCATCGGTTTCTTTGCGCTCAAGCTCGATTCAACTGGAACCTTCGTTGACTTTCTTATTCAACGGGCCACAGAAATCATTTTAGCGAATATGCAAGAGGCTAGCTTTCTCGAATACTGGCCATCATGCATTGCTGCAGCCGCAATACTTTCTGCGGCCAATGAAATCCCGAATCTGTCCCTTGAAAATCCTGAGCATGCCGAATCATGGTGTGATGGACTAAGCAAAGAGAAGATAATCGGCTGCTACCGATTAATGCAAGAACTGGTGCTGCAGAATAATCGGAAAAATAAGTCGCCTACTATCGTGTTACCACAGCTTCGAGTTACAGTTCGGGCCAGAATGAGGTCAAGTACTCCTACTACTACTGACTCATCCTCGTCCTTCTCATTATCATCATCCTCCTCGTCATCACCATTATCATCGTCGTATAAGAAGCGGAAATTAAATAACTGCTTGTGGGTAGATGATGACAAAGGAAGCTCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

253

Amino Acids

28.46

Weight (kDa)

6.19

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 28 - 84 8.2e-12 Cyclin, N-terminal domain
Cyclin_C PF02984 86 - 187 4.3e-13 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70210
fragaria_vesca FvH4_4g34970
malus_domestica MD13G1087200.v1.1 MD16G1087700.v1.1
prunus_persica Prupe.1G259100_v2.0.a1 Prupe.1G259100_v2.0.a1
pyrus_communis pycom13g07520 pycom16g07520
rosa_chinensis RchiOBHm_Chr4g0444481
rosa_laevigata RLG00000005830
rosa_multiflora Rmu_co8344649.1_g000001
rosa_roxburghii Rroxscaffold_5G00384970
rosa_rugosa Rorug04G0353100 Rorug04G0353100
rosa_samantha Rh4AG413300 Rh4BG424800 Rh4CG439400 Rh4DG420300
rosa_wichuraiana Rw4G035500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 154
AciI CCGC 3 cut(s) 411, 425, 709
AclWI GGATC 1 cut(s) 165
AcoI YGGCCR 3 cut(s) 80, 389, 426
AfaI GTAC 1 cut(s) 625
AfiI CCNNNNNNNGG 3 cut(s) 211, 477, 615
AgsI TTSAA 4 cut(s) 170, 303, 332, 455
AluBI AGCT 6 cut(s) 119, 217, 295, 375, 589, 753
AluI AGCT 6 cut(s) 119, 217, 295, 375, 589, 753
AlwI GGATC 1 cut(s) 165
AoxI GGCC 5 cut(s) 80, 336, 389, 426, 606
ApeKI GCWGC 5 cut(s) 119, 404, 407, 513, 541
AseI ATTAAT 1 cut(s) 524
AspLEI GCGC 1 cut(s) 289
AspS9I GGNCC 2 cut(s) 336, 606
AsuHPI GGTGA 1 cut(s) 675
AsuII TTCGAA 1 cut(s) 189
AsuNHI GCTAGC 1 cut(s) 371
BalI TGGCCA 2 cut(s) 82, 391
BarI GAAGNNNNNNTAC 2 cut(s) 13, 45
BbvI GCAGC 5 cut(s) 106, 391, 419, 500, 528
BccI CCATC 3 cut(s) 121, 400, 479
BcgI CGANNNNNNTGC 2 cut(s) 533, 567
BfaI CTAG 3 cut(s) 18, 221, 372
BfmI CTRYAG 3 cut(s) 161, 405, 542
BfuAI ACCTGC 1 cut(s) 154
BisI GCNGC 7 cut(s) 120, 405, 408, 411, 426, 514, 542
BlsI GCNGC 7 cut(s) 121, 406, 409, 412, 427, 515, 543
BmcAI AGTACT 1 cut(s) 625
BmgT120I GGNCC 2 cut(s) 336, 606
BmiI GGNNCC 3 cut(s) 135, 144, 310
BmtI GCTAGC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 262
Bpu10I CCTNAGC 2 cut(s) 115, 462
Bpu14I TTCGAA 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 275
Bsc4I CCNNNNNNNGG 3 cut(s) 211, 477, 615
Bse1I ACTGG 4 cut(s) 245, 310, 392, 540
Bse3DI GCAATG 1 cut(s) 399
BseGI GGATG 2 cut(s) 644, 668
BseLI CCNNNNNNNGG 3 cut(s) 211, 477, 615
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 2 cut(s) 218, 453
BseNI ACTGG 4 cut(s) 245, 310, 392, 540
BseRI GAGGAG 1 cut(s) 664
BseXI GCAGC 5 cut(s) 106, 391, 419, 500, 528
BshFI GGCC 5 cut(s) 82, 338, 391, 428, 608
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 3 cut(s) 211, 477, 615
BsmFI GGGAC 1 cut(s) 433
BsnI GGCC 5 cut(s) 82, 338, 391, 428, 608
Bsp119I TTCGAA 1 cut(s) 189
Bsp143I GATC 2 cut(s) 157, 251
BspACI CCGC 3 cut(s) 411, 425, 709
BspANI GGCC 5 cut(s) 82, 338, 391, 428, 608
BspCNI CTCAG 2 cut(s) 219, 454
BspHI TCATGA 1 cut(s) 7
BspLI GGNNCC 3 cut(s) 135, 144, 310
BspMAI CTGCAG 3 cut(s) 165, 409, 546
BspMI ACCTGC 1 cut(s) 154
BspOI GCTAGC 1 cut(s) 375
BspPI GGATC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 399
BsrI ACTGG 4 cut(s) 245, 310, 392, 540
BssMI GATC 2 cut(s) 157, 251
Bst4CI ACNGT 1 cut(s) 601
BstBI TTCGAA 1 cut(s) 189
BstC8I GCNNGC 4 cut(s) 69, 106, 373, 468
BstDEI CTNAG 4 cut(s) 115, 227, 462, 491
BstF5I GGATG 2 cut(s) 644, 668
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 2 cut(s) 160, 254
BstMBI GATC 2 cut(s) 157, 251
BstMWI GCNNNNNNNGC 2 cut(s) 223, 410
BstNSI RCATGY 2 cut(s) 108, 470
BstSFI CTRYAG 3 cut(s) 161, 405, 542
BstV1I GCAGC 5 cut(s) 106, 391, 419, 500, 528
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 5 cut(s) 82, 338, 391, 428, 608
BtsCI GGATG 2 cut(s) 644, 668
BveI ACCTGC 1 cut(s) 154
Cac8I GCNNGC 4 cut(s) 69, 106, 373, 468
CciI TCATGA 1 cut(s) 7
CfoI GCGC 1 cut(s) 289
Cfr13I GGNCC 2 cut(s) 336, 606
Csp6I GTAC 1 cut(s) 624
CviAII CATG 5 cut(s) 8, 105, 396, 467, 477
CviQI GTAC 1 cut(s) 624
DdeI CTNAG 4 cut(s) 115, 227, 462, 491
DpnI GATC 2 cut(s) 159, 253
DpnII GATC 2 cut(s) 157, 251
EaeI YGGCCR 3 cut(s) 80, 389, 426
EcoT22I ATGCAT 1 cut(s) 401
FaeI CATG 5 cut(s) 11, 108, 399, 470, 480
FaiI YATR 9 cut(s) 9, 15, 41, 106, 362, 397, 468, 478, 702
FaqI GGGAC 1 cut(s) 433
FatI CATG 5 cut(s) 7, 104, 395, 466, 476
Fnu4HI GCNGC 7 cut(s) 120, 405, 408, 411, 426, 514, 542
FokI GGATG 2 cut(s) 631, 655
Fsp4HI GCNGC 7 cut(s) 120, 405, 408, 411, 426, 514, 542
FspBI CTAG 3 cut(s) 18, 221, 372
GlaI GCGC 1 cut(s) 288
GluI GCNGC 7 cut(s) 120, 405, 408, 411, 426, 514, 542
GsuI CTGGAG 1 cut(s) 262
HaeIII GGCC 5 cut(s) 82, 338, 391, 428, 608
HhaI GCGC 1 cut(s) 289
Hin1II CATG 5 cut(s) 11, 108, 399, 470, 480
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HinfI GANTC 4 cut(s) 299, 442, 473, 641
HphI GGTGA 1 cut(s) 675
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 3 cut(s) 206, 555, 757
Hpy188III TCNNGA 4 cut(s) 8, 380, 439, 461
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 700
HpyAV CCTTC 3 cut(s) 164, 322, 664
HpyCH4III ACNGT 1 cut(s) 601
HpyCH4V TGCA 8 cut(s) 88, 104, 163, 364, 399, 407, 529, 544
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 410
HpyF3I CTNAG 4 cut(s) 115, 227, 462, 491
Hsp92II CATG 5 cut(s) 11, 108, 399, 470, 480
HspAI GCGC 1 cut(s) 287
Kzo9I GATC 2 cut(s) 157, 251
LmnI GCTCC 2 cut(s) 214, 758
LpnPI CCDG 9 cut(s) 125, 149, 208, 226, 291, 373, 474, 521, 622
Lsp1109I GCAGC 5 cut(s) 106, 391, 419, 500, 528
MaeI CTAG 3 cut(s) 18, 221, 372
MaeIII GTNAC 3 cut(s) 256, 579, 595
MalI GATC 2 cut(s) 159, 253
MboI GATC 2 cut(s) 157, 251
MboII GAAGA 2 cut(s) 219, 514
MflI RGATCY 1 cut(s) 157
MlsI TGGCCA 2 cut(s) 82, 391
MluCI AATT 1 cut(s) 713
MluNI TGGCCA 2 cut(s) 82, 391
MlyI GAGTC 1 cut(s) 635
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 9 cut(s) 124, 147, 157, 237, 361, 609, 658, 682, 685
Mox20I TGGCCA 2 cut(s) 82, 391
Mph1103I ATGCAT 1 cut(s) 401
MscI TGGCCA 2 cut(s) 82, 391
MseI TTAA 4 cut(s) 56, 95, 524, 716
Msp20I TGGCCA 2 cut(s) 82, 391
MwoI GCNNNNNNNGC 2 cut(s) 223, 410
NdeII GATC 2 cut(s) 157, 251
NheI GCTAGC 1 cut(s) 371
NlaIII CATG 5 cut(s) 11, 108, 399, 470, 480
NlaIV GGNNCC 3 cut(s) 135, 144, 310
NsiI ATGCAT 1 cut(s) 401
NspI RCATGY 2 cut(s) 108, 470
NspV TTCGAA 1 cut(s) 189
PaeI GCATGC 2 cut(s) 108, 470
PagI TCATGA 1 cut(s) 7
PfeI GAWTC 3 cut(s) 299, 442, 473
PkrI GCNGC 7 cut(s) 121, 406, 409, 412, 427, 515, 543
PleI GAGTC 1 cut(s) 635
PpsI GAGTC 1 cut(s) 635
PshBI ATTAAT 1 cut(s) 524
PspN4I GGNNCC 3 cut(s) 135, 144, 310
PspPI GGNCC 2 cut(s) 336, 606
PstI CTGCAG 3 cut(s) 165, 409, 546
PsuI RGATCY 1 cut(s) 157
RsaI GTAC 1 cut(s) 625
RsaNI GTAC 1 cut(s) 624
SaqAI TTAA 4 cut(s) 56, 95, 524, 716
SatI GCNGC 7 cut(s) 120, 405, 408, 411, 426, 514, 542
Sau3AI GATC 2 cut(s) 157, 251
Sau96I GGNCC 2 cut(s) 336, 606
ScaI AGTACT 1 cut(s) 625
SchI GAGTC 1 cut(s) 635
SfcI CTRYAG 3 cut(s) 161, 405, 542
SfuI TTCGAA 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SphI GCATGC 2 cut(s) 108, 470
Sse9I AATT 1 cut(s) 713
SsiI CCGC 3 cut(s) 411, 425, 709
SspMI CTAG 3 cut(s) 18, 221, 372
TaaI ACNGT 1 cut(s) 601
TaqI TCGA 4 cut(s) 189, 297, 381, 592
TasI AATT 1 cut(s) 713
TatI WGTACW 1 cut(s) 623
TauI GCSGC 2 cut(s) 413, 428
TfiI GAWTC 3 cut(s) 299, 442, 473
Tru1I TTAA 4 cut(s) 56, 95, 524, 716
Tru9I TTAA 4 cut(s) 56, 95, 524, 716
TseI GCWGC 5 cut(s) 119, 404, 407, 513, 541
TspDTI ATGAA 2 cut(s) 262, 447
VspI ATTAAT 1 cut(s) 524
XceI RCATGY 2 cut(s) 108, 470
XspI CTAG 3 cut(s) 18, 221, 372
ZrmI AGTACT 1 cut(s) 625
Zsp2I ATGCAT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.