Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0012007

Physical Location & Seq

Genomic Coordinates Reverse (-)

62857086 .. 62861083

Gene Structure 3998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG420300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTATCATGATTATACTAGAAGTAGTTTTACTAATGATATGTGCTTAATTTGTTTAATGTTTCAGCAAGCAAATGGGTGGCCAATGCAACTTTTAAGTGTTGCATGCTTGTCTTTAGCTGCCAAGATGGAGGAACCTCTGGTTCCCTCGTTGTTGGATCTGCAGGTTGAAGGTGCGAAGTTAATTTTCGAACCCAGAACAATCCGAAGAATGGAGCTTCTAGTGCTGAGTGTTTTGGACTGGAGGCTACGATCTGTAACACCATTCTGCTTCATCGCTTTCTTTGCGTTCAAGCTCGATTCAACTGGAACCTTCGTTGACTTTCTTATTCAACGGGCCACGGAAATCATTTTAGCGAATATCCAAGAGGCTAGCTTTCTTGAATACTGGCCATCATGCATTGCTGCAGCCGCAATACTTTCTGCGGCCAATGAAATCCCGAATCTGTCCCTTGAAAATCCGGAGCATGCTGAATCATGGTGTGATGGACTAAGCAAAGAGAAGATAATCGGCTGCTACAGATTAATGCAAGAACTGGTGATGCAGAATAATCGGAAAAATAAGTCGCCTACTATAGTGTTACCACAGCTTCGAGTTACAGTTCGGGCCAGAATGAGGTCAAGTACTCCTACTACTCCTACTACTACTGACTCATCCTCGTCCTTCTCATTATCATCATCCTCCTCGTCATCACCATTATCATTGTCGTATAAGAAGCGGAAATTAAATAACTGCTTGTGGGTAGATGATGACAAAGGAAGCTCCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

256

Amino Acids

28.8

Weight (kDa)

6.19

Isoelectric Point (pI)

53.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	28 - 84	8.4e-12	Cyclin, N-terminal domain
Cyclin_C	PF02984	86 - 187	3.1e-13	Cyclin, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70210
fragaria_vesca	FvH4_4g34970
malus_domestica	MD13G1087200.v1.1 MD16G1087700.v1.1
prunus_persica	Prupe.1G259100_v2.0.a1 Prupe.1G259100_v2.0.a1
pyrus_communis	pycom13g07520 pycom16g07520
rosa_chinensis	RchiOBHm_Chr4g0444481
rosa_laevigata	RLG00000005830
rosa_multiflora	Rmu_co8344649.1_g000001
rosa_roxburghii	Rroxscaffold_5G00384970
rosa_rugosa	Rorug04G0353100 Rorug04G0353100
rosa_samantha	Rh4AG413300 Rh4BG424800 Rh4CG439400 Rh4DG420300
rosa_wichuraiana	Rw4G035500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	154
AccIII	TCCGGA	1 cut(s)	460
AciI	CCGC	3 cut(s)	411, 425, 718
AclWI	GGATC	1 cut(s)	165
AcoI	YGGCCR	3 cut(s)	80, 389, 426
AfaI	GTAC	1 cut(s)	625
AfiI	CCNNNNNNNGG	2 cut(s)	211, 615
AgsI	TTSAA	6 cut(s)	170, 292, 303, 332, 383, 455
AluBI	AGCT	6 cut(s)	119, 217, 295, 375, 589, 762
AluI	AGCT	6 cut(s)	119, 217, 295, 375, 589, 762
AlwI	GGATC	1 cut(s)	165
Aor13HI	TCCGGA	1 cut(s)	460
AoxI	GGCC	5 cut(s)	80, 336, 389, 426, 606
ApeKI	GCWGC	4 cut(s)	119, 404, 407, 513
AseI	ATTAAT	1 cut(s)	524
AspS9I	GGNCC	2 cut(s)	336, 606
AsuHPI	GGTGA	2 cut(s)	550, 684
AsuII	TTCGAA	1 cut(s)	189
AsuNHI	GCTAGC	1 cut(s)	371
BalI	TGGCCA	2 cut(s)	82, 391
BarI	GAAGNNNNNNTAC	2 cut(s)	13, 45
BbvI	GCAGC	4 cut(s)	106, 391, 419, 500
BccI	CCATC	3 cut(s)	121, 400, 479
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BfaI	CTAG	3 cut(s)	18, 221, 372
BfmI	CTRYAG	4 cut(s)	161, 405, 517, 573
BfuAI	ACCTGC	1 cut(s)	154
BisI	GCNGC	6 cut(s)	120, 405, 408, 411, 426, 514
BlsI	GCNGC	6 cut(s)	121, 406, 409, 412, 427, 515
BmcAI	AGTACT	1 cut(s)	625
BmgT120I	GGNCC	2 cut(s)	336, 606
BmiI	GGNNCC	3 cut(s)	135, 144, 310
BmsI	GCATC	1 cut(s)	531
BmtI	GCTAGC	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	262
Bpu14I	TTCGAA	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	339
BsaWI	WCCGGW	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 615
Bse1I	ACTGG	4 cut(s)	245, 310, 392, 540
Bse3DI	GCAATG	1 cut(s)	399
BseAI	TCCGGA	1 cut(s)	460
BseDI	CCNNGG	1 cut(s)	339
BseGI	GGATG	2 cut(s)	653, 677
BseLI	CCNNNNNNNGG	2 cut(s)	211, 615
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	4 cut(s)	245, 310, 392, 540
BseRI	GAGGAG	1 cut(s)	673
BseXI	GCAGC	4 cut(s)	106, 391, 419, 500
BshFI	GGCC	5 cut(s)	82, 338, 391, 428, 608
BsiSI	CCGG	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	2 cut(s)	211, 615
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	5 cut(s)	82, 338, 391, 428, 608
Bsp119I	TTCGAA	1 cut(s)	189
Bsp13I	TCCGGA	1 cut(s)	460
Bsp143I	GATC	2 cut(s)	157, 251
BspACI	CCGC	3 cut(s)	411, 425, 718
BspANI	GGCC	5 cut(s)	82, 338, 391, 428, 608
BspCNI	CTCAG	1 cut(s)	219
BspEI	TCCGGA	1 cut(s)	460
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	3 cut(s)	135, 144, 310
BspMAI	CTGCAG	2 cut(s)	165, 409
BspMI	ACCTGC	1 cut(s)	154
BspOI	GCTAGC	1 cut(s)	375
BspPI	GGATC	1 cut(s)	165
BspT104I	TTCGAA	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	4 cut(s)	245, 310, 392, 540
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	2 cut(s)	157, 251
Bst4CI	ACNGT	1 cut(s)	601
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	4 cut(s)	69, 106, 373, 468
BstDEI	CTNAG	2 cut(s)	227, 491
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	2 cut(s)	653, 677
BstKTI	GATC	2 cut(s)	160, 254
BstMBI	GATC	2 cut(s)	157, 251
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 284, 410
BstNSI	RCATGY	2 cut(s)	108, 470
BstSFI	CTRYAG	4 cut(s)	161, 405, 517, 573
BstV1I	GCAGC	4 cut(s)	106, 391, 419, 500
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	5 cut(s)	82, 338, 391, 428, 608
BtgI	CCRYGG	1 cut(s)	339
BtgZI	GCGATG	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	653, 677
BveI	ACCTGC	1 cut(s)	154
Cac8I	GCNNGC	4 cut(s)	69, 106, 373, 468
CciI	TCATGA	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	336, 606
Csp6I	GTAC	1 cut(s)	624
CviAII	CATG	5 cut(s)	8, 105, 396, 467, 477
CviQI	GTAC	1 cut(s)	624
DdeI	CTNAG	2 cut(s)	227, 491
DpnI	GATC	2 cut(s)	159, 253
DpnII	GATC	2 cut(s)	157, 251
EaeI	YGGCCR	3 cut(s)	80, 389, 426
EcoT22I	ATGCAT	1 cut(s)	401
FaeI	CATG	5 cut(s)	11, 108, 399, 470, 480
FaiI	YATR	9 cut(s)	9, 15, 41, 106, 397, 468, 478, 575, 711
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	5 cut(s)	7, 104, 395, 466, 476
Fnu4HI	GCNGC	6 cut(s)	120, 405, 408, 411, 426, 514
FokI	GGATG	2 cut(s)	640, 664
Fsp4HI	GCNGC	6 cut(s)	120, 405, 408, 411, 426, 514
FspBI	CTAG	3 cut(s)	18, 221, 372
GluI	GCNGC	6 cut(s)	120, 405, 408, 411, 426, 514
GsuI	CTGGAG	1 cut(s)	262
HaeIII	GGCC	5 cut(s)	82, 338, 391, 428, 608
HapII	CCGG	1 cut(s)	461
Hin1II	CATG	5 cut(s)	11, 108, 399, 470, 480
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	4 cut(s)	299, 442, 473, 650
HpaII	CCGG	1 cut(s)	461
HphI	GGTGA	2 cut(s)	550, 684
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	3 cut(s)	206, 555, 766
Hpy188III	TCNNGA	4 cut(s)	8, 380, 439, 461
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	3 cut(s)	164, 322, 673
HpyCH4III	ACNGT	1 cut(s)	601
HpyCH4V	TGCA	7 cut(s)	88, 104, 163, 399, 407, 529, 544
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 284, 410
HpyF3I	CTNAG	2 cut(s)	227, 491
Hsp92II	CATG	5 cut(s)	11, 108, 399, 470, 480
Kpn2I	TCCGGA	1 cut(s)	460
Kzo9I	GATC	2 cut(s)	157, 251
LmnI	GCTCC	3 cut(s)	214, 463, 767
LpnPI	CCDG	9 cut(s)	125, 149, 208, 226, 291, 373, 474, 521, 622
Lsp1109I	GCAGC	4 cut(s)	106, 391, 419, 500
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	3 cut(s)	18, 221, 372
MaeIII	GTNAC	3 cut(s)	256, 579, 595
MalI	GATC	2 cut(s)	159, 253
MboI	GATC	2 cut(s)	157, 251
MboII	GAAGA	2 cut(s)	219, 514
MflI	RGATCY	1 cut(s)	157
MlsI	TGGCCA	2 cut(s)	82, 391
MluCI	AATT	3 cut(s)	48, 183, 722
MluNI	TGGCCA	2 cut(s)	82, 391
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	9 cut(s)	124, 147, 157, 237, 361, 609, 667, 691, 694
Mox20I	TGGCCA	2 cut(s)	82, 391
Mph1103I	ATGCAT	1 cut(s)	401
MroI	TCCGGA	1 cut(s)	460
MscI	TGGCCA	2 cut(s)	82, 391
MseI	TTAA	6 cut(s)	47, 56, 95, 182, 524, 725
Msp20I	TGGCCA	2 cut(s)	82, 391
MspI	CCGG	1 cut(s)	461
MwoI	GCNNNNNNNGC	3 cut(s)	223, 284, 410
NdeII	GATC	2 cut(s)	157, 251
NheI	GCTAGC	1 cut(s)	371
NlaIII	CATG	5 cut(s)	11, 108, 399, 470, 480
NlaIV	GGNNCC	3 cut(s)	135, 144, 310
NsiI	ATGCAT	1 cut(s)	401
NspI	RCATGY	2 cut(s)	108, 470
NspV	TTCGAA	1 cut(s)	189
PaeI	GCATGC	2 cut(s)	108, 470
PagI	TCATGA	1 cut(s)	7
PfeI	GAWTC	3 cut(s)	299, 442, 473
PkrI	GCNGC	6 cut(s)	121, 406, 409, 412, 427, 515
PleI	GAGTC	1 cut(s)	644
PpsI	GAGTC	1 cut(s)	644
PshBI	ATTAAT	1 cut(s)	524
PspN4I	GGNNCC	3 cut(s)	135, 144, 310
PspPI	GGNCC	2 cut(s)	336, 606
PstI	CTGCAG	2 cut(s)	165, 409
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	1 cut(s)	625
RsaNI	GTAC	1 cut(s)	624
SaqAI	TTAA	6 cut(s)	47, 56, 95, 182, 524, 725
SatI	GCNGC	6 cut(s)	120, 405, 408, 411, 426, 514
Sau3AI	GATC	2 cut(s)	157, 251
Sau96I	GGNCC	2 cut(s)	336, 606
ScaI	AGTACT	1 cut(s)	625
SchI	GAGTC	1 cut(s)	644
SfaNI	GCATC	1 cut(s)	531
SfcI	CTRYAG	4 cut(s)	161, 405, 517, 573
SfuI	TTCGAA	1 cut(s)	189
SphI	GCATGC	2 cut(s)	108, 470
Sse9I	AATT	3 cut(s)	48, 183, 722
SsiI	CCGC	3 cut(s)	411, 425, 718
SspMI	CTAG	3 cut(s)	18, 221, 372
TaaI	ACNGT	1 cut(s)	601
TaqI	TCGA	3 cut(s)	189, 297, 592
TasI	AATT	3 cut(s)	48, 183, 722
TatI	WGTACW	1 cut(s)	623
TauI	GCSGC	2 cut(s)	413, 428
TfiI	GAWTC	3 cut(s)	299, 442, 473
Tru1I	TTAA	6 cut(s)	47, 56, 95, 182, 524, 725
Tru9I	TTAA	6 cut(s)	47, 56, 95, 182, 524, 725
TseI	GCWGC	4 cut(s)	119, 404, 407, 513
TspDTI	ATGAA	2 cut(s)	262, 447
TspGWI	ACGGA	1 cut(s)	356
VspI	ATTAAT	1 cut(s)	524
XceI	RCATGY	2 cut(s)	108, 470
XspI	CTAG	3 cut(s)	18, 221, 372
ZrmI	AGTACT	1 cut(s)	625
Zsp2I	ATGCAT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.