MD16G1087700.v1.1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0012007
Physical Location & Seq
Forward (+)
6048510 .. 6051995
3486 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1087700.v1.1.491

Sequence Viewer

Length: 1026 bp
ATGTCGACAGTATGGAGCTCGGACTGCTTCTCCGAGCTACTGTGCGCAGAGGACTCCGGAATTCTGTCCGGAGAGTCGCCGGAATGCTCGTCCGAAGTGGAATCTCCGGCGTACAGCGAGGAAGAGTCCATAGCCGGATTCATCCAAGGCGAGCGCCACTTCGTCCCCGGTATCGATTACTTGTCTCGCTTACACTCTCAGTCGCTTGACGTTACCGCCAGAGCTGATTCTGTTGCATGGATTCTCAAGGTCCAGAGTTACTATGGATTTCAACCACTTACGGCGTATCTTTCCGTTAACTACTTGGATCGGTTCTTATACTCCCGCCGGTTGCCGCAAGCAAGTGGGTGGCCGATGCAACTTTTAAGTGTTGCTTGCTTGTCCTTAGCTGCTAAGATGGAGGAACCTCTGGTTCCTTCGCTGTTGGATCTTCAGGTAGAAGGTGCCAAGTTTATATTCGAACCCAGAACAATCCGCAGGATGGAGCTTCTGGTGCTGAGTGTTTTGGATTGGAGGCTACGATCTATAACACCCTTCAGCTTCATCGCTTTCTTTGCATGCAAGCTCGATCCAACGGCAACTTTCATTGGCTTTCTCATTTCACGCGCCACGGATATCATCTTATCGAATATCCAGGACTCTAGCTTTCTTGAATATTGGCCATCATGCATTGCTGCGGCAGCAATACTTTCAGCAGCCGATGAAATGCCTAATCTGTCGCTTGAAAACCCTGAACATGCCGAGTCATGGTGTGATGGACTAAGCAAAGAGAAAATAATCGGATGCTATAGATTAATGCAAGATCTAGTGGTTCAAAATTGTCGGAATAAAAAGTCATTACCCAATGTGTTACCACTGCAACTCCGAGTTACGGTTCGGGGCAGAATGAGGTCGAGTTCCGACTCATTGTCCCCGTCGTTCTCATTATCATCCCCGTCATCGTCATCATCATCACCAATATCTTATAAAAGGAGGAAAACAAATAACTGCTTGTGGGTAGACGATGATAAAGGAAACTCCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

342

Amino Acids

38.05

Weight (kDa)

5.05

Isoelectric Point (pI)

68.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 47 - 174 1.3e-27 Cyclin, N-terminal domain
Cyclin_C PF02984 176 - 278 4.2e-12 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70210
fragaria_vesca FvH4_4g34970
malus_domestica MD13G1087200.v1.1 MD16G1087700.v1.1
prunus_persica Prupe.1G259100_v2.0.a1 Prupe.1G259100_v2.0.a1
pyrus_communis pycom13g07520 pycom16g07520
rosa_chinensis RchiOBHm_Chr4g0444481
rosa_laevigata RLG00000005830
rosa_multiflora Rmu_co8344649.1_g000001
rosa_roxburghii Rroxscaffold_5G00384970
rosa_rugosa Rorug04G0353100 Rorug04G0353100
rosa_samantha Rh4AG413300 Rh4BG424800 Rh4CG439400 Rh4DG420300
rosa_wichuraiana Rw4G035500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 966
Acc16I TGCGCA 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 443
AccI GTMKAC 2 cut(s) 5, 999
AccII CGCG 1 cut(s) 606
AccIII TCCGGA 2 cut(s) 56, 68
AciI CCGC 5 cut(s) 216, 325, 335, 475, 677
AclWI GGATC 3 cut(s) 315, 435, 563
AcoI YGGCCR 2 cut(s) 350, 659
AcsI RAATTY 1 cut(s) 60
AcuI CTGAAG 2 cut(s) 416, 520
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 3 cut(s) 481, 747, 871
AgsI TTSAA 4 cut(s) 272, 653, 725, 815
AhdI GACNNNNNGTC 1 cut(s) 907
AjnI CCWGG 1 cut(s) 633
AjuI GAANNNNNNNTTGG 2 cut(s) 440, 472
AluBI AGCT 8 cut(s) 18, 37, 224, 389, 487, 540, 565, 645
AluI AGCT 8 cut(s) 18, 37, 224, 389, 487, 540, 565, 645
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 3 cut(s) 315, 435, 563
Aor13HI TCCGGA 2 cut(s) 56, 68
AoxI GGCC 2 cut(s) 350, 659
ApeKI GCWGC 4 cut(s) 389, 674, 680, 695
ApoI RAATTY 1 cut(s) 60
AseI ATTAAT 1 cut(s) 794
AspLEI GCGC 3 cut(s) 47, 156, 608
AspS9I GGNCC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 945
AsuII TTCGAA 1 cut(s) 459
AvaII GGWCC 1 cut(s) 250
BalI TGGCCA 1 cut(s) 661
BanI GGYRCC 1 cut(s) 443
BanII GRGCYC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 4 cut(s) 376, 661, 692, 707
BccI CCATC 4 cut(s) 391, 475, 670, 749
BceAI ACGGC 2 cut(s) 297, 591
BciT130I CCWGG 1 cut(s) 635
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 2 cut(s) 642, 806
BfmI CTRYAG 1 cut(s) 787
BfoI RGCGCY 1 cut(s) 157
BglII AGATCT 1 cut(s) 802
BisI GCNGC 6 cut(s) 335, 390, 675, 678, 681, 696
BlsI GCNGC 6 cut(s) 336, 391, 676, 679, 682, 697
Bme1390I CCNGG 2 cut(s) 168, 635
Bme18I GGWCC 1 cut(s) 250
BmeRI GACNNNNNGTC 1 cut(s) 907
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 3 cut(s) 405, 414, 445
BmrFI CCNGG 2 cut(s) 168, 635
BmsI GCATC 2 cut(s) 345, 773
Bpu10I CCTNAGC 1 cut(s) 385
Bpu14I TTCGAA 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 168
Bsa29I ATCGAT 1 cut(s) 174
BsaJI CCNNGG 3 cut(s) 145, 166, 609
BsaWI WCCGGW 2 cut(s) 56, 68
BsaXI ACNNNNNCTCC 4 cut(s) 14, 44, 846, 876
Bsc4I CCNNNNNNNGG 3 cut(s) 481, 747, 871
Bse118I RCCGGY 1 cut(s) 327
Bse3DI GCAATG 1 cut(s) 669
BseAI TCCGGA 2 cut(s) 56, 68
BseBI CCWGG 1 cut(s) 635
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 3 cut(s) 145, 166, 609
BseGI GGATG 4 cut(s) 141, 486, 788, 929
BseLI CCNNNNNNNGG 3 cut(s) 481, 747, 871
BseMI GCAATG 1 cut(s) 669
BseMII CTCAG 2 cut(s) 212, 488
BseXI GCAGC 4 cut(s) 376, 661, 692, 707
Bsh1236I CGCG 1 cut(s) 606
BshFI GGCC 2 cut(s) 352, 661
BshNI GGYRCC 1 cut(s) 443
BshVI ATCGAT 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 20
BsiSI CCGG 7 cut(s) 57, 69, 80, 107, 135, 168, 328
BslFI GGGAC 2 cut(s) 149, 895
BslI CCNNNNNNNGG 3 cut(s) 481, 747, 871
BsmAI GTCTC 1 cut(s) 189
BsmFI GGGAC 2 cut(s) 149, 895
BsmI GAATGC 1 cut(s) 89
BsnI GGCC 2 cut(s) 352, 661
Bsp119I TTCGAA 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 20
Bsp13I TCCGGA 2 cut(s) 56, 68
Bsp143I GATC 5 cut(s) 307, 427, 521, 568, 802
BspACI CCGC 5 cut(s) 216, 325, 335, 475, 677
BspANI GGCC 2 cut(s) 352, 661
BspCNI CTCAG 2 cut(s) 211, 489
BspDI ATCGAT 1 cut(s) 174
BspEI TCCGGA 2 cut(s) 56, 68
BspFNI CGCG 1 cut(s) 606
BspLI GGNNCC 3 cut(s) 405, 414, 445
BspPI GGATC 3 cut(s) 315, 435, 563
BspT104I TTCGAA 1 cut(s) 459
BspT107I GGYRCC 1 cut(s) 443
BsrDI GCAATG 1 cut(s) 669
BsrFI RCCGGY 1 cut(s) 327
BssAI RCCGGY 1 cut(s) 327
BssECI CCNNGG 3 cut(s) 145, 166, 609
BssMI GATC 5 cut(s) 307, 427, 521, 568, 802
BssT1I CCWWGG 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 635
Bst4CI ACNGT 3 cut(s) 10, 42, 874
Bst6I CTCTTC 1 cut(s) 117
BstBI TTCGAA 1 cut(s) 459
BstC8I GCNNGC 5 cut(s) 152, 339, 376, 559, 563
BstDEI CTNAG 5 cut(s) 198, 385, 393, 497, 761
BstDSI CCRYGG 1 cut(s) 609
BstF5I GGATG 4 cut(s) 141, 486, 788, 929
BstFNI CGCG 1 cut(s) 606
BstH2I RGCGCY 1 cut(s) 157
BstHHI GCGC 3 cut(s) 47, 156, 608
BstKTI GATC 5 cut(s) 310, 430, 524, 571, 805
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 5 cut(s) 307, 427, 521, 568, 802
BstMWI GCNNNNNNNGC 4 cut(s) 24, 493, 554, 680
BstNI CCWGG 1 cut(s) 635
BstNSI RCATGY 2 cut(s) 561, 740
BstSCI CCNGG 2 cut(s) 166, 633
BstSFI CTRYAG 1 cut(s) 787
BstUI CGCG 1 cut(s) 606
BstV1I GCAGC 4 cut(s) 376, 661, 692, 707
BstX2I RGATCY 2 cut(s) 427, 802
BstYI RGATCY 2 cut(s) 427, 802
Bsu15I ATCGAT 1 cut(s) 174
BsuRI GGCC 2 cut(s) 352, 661
BsuTUI ATCGAT 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 609
BtgZI GCGATG 1 cut(s) 529
BtsCI GGATG 4 cut(s) 141, 486, 788, 929
BtsI GCAGTG 1 cut(s) 854
BtsIMutI CAGTG 1 cut(s) 854
Cac8I GCNNGC 5 cut(s) 152, 339, 376, 559, 563
CfoI GCGC 3 cut(s) 47, 156, 608
Cfr10I RCCGGY 1 cut(s) 327
Cfr13I GGNCC 1 cut(s) 250
ClaI ATCGAT 1 cut(s) 174
Csp6I GTAC 1 cut(s) 112
CviAII CATG 5 cut(s) 237, 558, 666, 737, 747
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 5 cut(s) 198, 385, 393, 497, 761
DpnI GATC 5 cut(s) 309, 429, 523, 570, 804
DpnII GATC 5 cut(s) 307, 427, 521, 568, 802
DriI GACNNNNNGTC 1 cut(s) 907
EaeI YGGCCR 2 cut(s) 350, 659
Eam1104I CTCTTC 1 cut(s) 117
Eam1105I GACNNNNNGTC 1 cut(s) 907
EarI CTCTTC 1 cut(s) 117
Ecl136II GAGCTC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 20
Eco32I GATATC 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 18
Eco57I CTGAAG 2 cut(s) 416, 520
EcoICRI GAGCTC 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 633
EcoRV GATATC 1 cut(s) 616
EcoT14I CCWWGG 1 cut(s) 145
EcoT22I ATGCAT 1 cut(s) 671
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 5 cut(s) 240, 561, 669, 740, 750
FalI AAGNNNNNCTT 2 cut(s) 358, 390
FaqI GGGAC 2 cut(s) 149, 895
FatI CATG 5 cut(s) 236, 557, 665, 736, 746
FauI CCCGC 1 cut(s) 332
FblI GTMKAC 2 cut(s) 5, 999
Fnu4HI GCNGC 6 cut(s) 335, 390, 675, 678, 681, 696
FokI GGATG 4 cut(s) 128, 493, 795, 916
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 6 cut(s) 335, 390, 675, 678, 681, 696
FspBI CTAG 2 cut(s) 642, 806
FspI TGCGCA 1 cut(s) 46
GlaI GCGC 3 cut(s) 46, 155, 607
GluI GCNGC 6 cut(s) 335, 390, 675, 678, 681, 696
HaeII RGCGCY 1 cut(s) 157
HaeIII GGCC 2 cut(s) 352, 661
HapII CCGG 7 cut(s) 57, 69, 80, 107, 135, 168, 328
HhaI GCGC 3 cut(s) 47, 156, 608
Hin1II CATG 5 cut(s) 240, 561, 669, 740, 750
Hin6I GCGC 3 cut(s) 45, 154, 606
HinP1I GCGC 3 cut(s) 45, 154, 606
HincII GTYRAC 2 cut(s) 6, 298
HindII GTYRAC 2 cut(s) 6, 298
HpaI GTTAAC 1 cut(s) 298
HpaII CCGG 7 cut(s) 57, 69, 80, 107, 135, 168, 328
HphI GGTGA 1 cut(s) 945
Hpy166II GTNNAC 3 cut(s) 6, 298, 1000
Hpy188I TCNGA 8 cut(s) 22, 34, 94, 782, 825, 866, 901, 1021
Hpy188III TCNNGA 4 cut(s) 57, 69, 253, 650
Hpy8I GTNNAC 3 cut(s) 6, 298, 1000
Hpy99I CGWCG 1 cut(s) 919
HpyAV CCTTC 3 cut(s) 426, 434, 544
HpyCH4III ACNGT 3 cut(s) 10, 42, 874
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 7 cut(s) 236, 358, 557, 561, 669, 799, 859
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 493, 554, 680
HpyF3I CTNAG 5 cut(s) 198, 385, 393, 497, 761
HpySE526I ACGT 1 cut(s) 210
Hsp92II CATG 5 cut(s) 240, 561, 669, 740, 750
HspAI GCGC 3 cut(s) 45, 154, 606
Kpn2I TCCGGA 2 cut(s) 56, 68
KspAI GTTAAC 1 cut(s) 298
Kzo9I GATC 5 cut(s) 307, 427, 521, 568, 802
LmnI GCTCC 2 cut(s) 15, 484
Lsp1109I GCAGC 4 cut(s) 376, 661, 692, 707
LweI GCATC 2 cut(s) 345, 773
MaeI CTAG 2 cut(s) 642, 806
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 4 cut(s) 211, 257, 849, 868
MalI GATC 5 cut(s) 309, 429, 523, 570, 804
MboI GATC 5 cut(s) 307, 427, 521, 568, 802
MboII GAAGA 2 cut(s) 134, 422
MflI RGATCY 2 cut(s) 427, 802
MhlI GDGCHC 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 661
MluCI AATT 2 cut(s) 60, 817
MluNI TGGCCA 1 cut(s) 661
MlyI GAGTC 6 cut(s) 47, 83, 134, 632, 752, 896
MmeI TCCRAC 4 cut(s) 405, 596, 803, 924
MnlI CCTC 7 cut(s) 43, 112, 394, 417, 507, 882, 966
Mox20I TGGCCA 1 cut(s) 661
Mph1103I ATGCAT 1 cut(s) 671
MroI TCCGGA 2 cut(s) 56, 68
MscI TGGCCA 1 cut(s) 661
MseI TTAA 3 cut(s) 297, 365, 794
Msp20I TGGCCA 1 cut(s) 661
MspI CCGG 7 cut(s) 57, 69, 80, 107, 135, 168, 328
MspR9I CCNGG 2 cut(s) 168, 635
Mva1269I GAATGC 1 cut(s) 89
MvaI CCWGG 1 cut(s) 635
MvnI CGCG 1 cut(s) 606
MwoI GCNNNNNNNGC 4 cut(s) 24, 493, 554, 680
NciI CCSGG 1 cut(s) 168
NdeII GATC 5 cut(s) 307, 427, 521, 568, 802
NlaIII CATG 5 cut(s) 240, 561, 669, 740, 750
NlaIV GGNNCC 3 cut(s) 405, 414, 445
NmeAIII GCCGAG 1 cut(s) 766
NsbI TGCGCA 1 cut(s) 46
NsiI ATGCAT 1 cut(s) 671
NspI RCATGY 2 cut(s) 561, 740
NspV TTCGAA 1 cut(s) 459
PaeI GCATGC 1 cut(s) 561
PctI GAATGC 1 cut(s) 89
PfeI GAWTC 4 cut(s) 101, 138, 227, 241
PfoI TCCNGGA 1 cut(s) 633
PkrI GCNGC 6 cut(s) 336, 391, 676, 679, 682, 697
PleI GAGTC 6 cut(s) 47, 82, 133, 632, 751, 896
PpsI GAGTC 6 cut(s) 47, 82, 133, 632, 751, 896
PshBI ATTAAT 1 cut(s) 794
PsiI TTATAA 1 cut(s) 966
Psp124BI GAGCTC 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 633
PspGI CCWGG 1 cut(s) 633
PspN4I GGNNCC 3 cut(s) 405, 414, 445
PspPI GGNCC 1 cut(s) 250
PsuI RGATCY 2 cut(s) 427, 802
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SacI GAGCTC 1 cut(s) 20
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 297, 365, 794
SatI GCNGC 6 cut(s) 335, 390, 675, 678, 681, 696
Sau3AI GATC 5 cut(s) 307, 427, 521, 568, 802
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 6 cut(s) 47, 83, 134, 632, 752, 896
ScrFI CCNGG 2 cut(s) 168, 635
SduI GDGCHC 1 cut(s) 20
SfaNI GCATC 2 cut(s) 345, 773
SfcI CTRYAG 1 cut(s) 787
SfuI TTCGAA 1 cut(s) 459
SinI GGWCC 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SphI GCATGC 1 cut(s) 561
Sse9I AATT 2 cut(s) 60, 817
SsiI CCGC 5 cut(s) 216, 325, 335, 475, 677
SspI AATATT 1 cut(s) 656
SspMI CTAG 2 cut(s) 642, 806
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 166, 633
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 3 cut(s) 10, 42, 874
TaiI ACGT 1 cut(s) 213
TaqI TCGA 6 cut(s) 5, 174, 459, 567, 626, 893
TasI AATT 2 cut(s) 60, 817
TauI GCSGC 2 cut(s) 337, 680
TfiI GAWTC 4 cut(s) 101, 138, 227, 241
Tru1I TTAA 3 cut(s) 297, 365, 794
Tru9I TTAA 3 cut(s) 297, 365, 794
TscAI CASTG 1 cut(s) 861
TseI GCWGC 4 cut(s) 389, 674, 680, 695
TspDTI ATGAA 4 cut(s) 130, 532, 574, 717
TspGWI ACGGA 2 cut(s) 283, 626
TspRI CASTG 1 cut(s) 861
VpaK11BI GGWCC 1 cut(s) 250
VspI ATTAAT 1 cut(s) 794
XapI RAATTY 1 cut(s) 60
XceI RCATGY 2 cut(s) 561, 740
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
XmiI GTMKAC 2 cut(s) 5, 999
XspI CTAG 2 cut(s) 642, 806
Zsp2I ATGCAT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.