pycom13g07520

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012007
Physical Location & Seq
Forward (+)
4992984 .. 4995270
2287 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g07520.5

Sequence Viewer

Length: 1020 bp
ATGTCGACTGTATGGAGCTCGGACTGTTTTTCGGACCTATTGTGCGCGGAAGACTCCGGAATACTGTCCGGAGAGTCGCCGGAATGCTCGTCGGACGTGGAATCTCCGGCGTGTAGCGAAGAATGCATCGCCGGATTCATCGAAGGGGAGCGCCACTTCGTCCCCGGTTTCGATTACTTGTCTCGCTTCCACTCTCAGTCGCTCGACGTCACCGCCAGAGCCGACTCCGTTGCATGGATTCTCAAGGTCCAAAGTTACTATGGGTTTCAACCACTGACGGCGTATCTCTCCGTTAACTACTTGGATCGGTTCTTATACTCCCGCCGCCTGCCGCAAGCAAATGGGTGGCCGATGCAACTTTTAAGCGTTGCTTGCTTGTCCTTAGCTGCTAAGATGGAGGAACCTCTGGTTCCTTCGCTGTTGGATCTTCAGGTGGAAGGTGCCAAGTTTATATTCGAACCCAGAACAGTCCGCAGGATGGAGCTTCTGGTGCTGAGCGTTTTGGATTGGAGGCTACGATCCATAACACCCTTCAGCTTCATCGCTTTCTTTGCATGCAAGCTCGATCCAACGGCAACTTTCATTGGCTTTCTCATTTCACGCGCCACGGATATCATCTTATCCAATATCCAGGAATCTAGCTTTCTTGAATATTGGCCATCATGCATTGCTGCGGCAGCAATACTCTCTGCAGCCGATGAAATCCCGAATCTGTCACTTGAAAACCCTGAACATGCCGAATCATGGTGTGATGGACTAAGCAAAGAGAAAATAATCCGATGCTATCGATTAATGCAAGATCTAGTGGTTGGAAATAGTCGGAATAAAAAGTCATCACCCAATGTGCTACCACTCCAACTCCGAGTTACGGTTCGGGGTAGAATGAGGTCGAGTTCGGACTCATCGTCCTCGTCATCGATCTCATTATCTTCGCCATCGTCATCGTCACCAATATCATATAAAAGGAGGAAACTAAATAACTGCTTGTGGGTAGATGATGACAAAGGAAACTCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

340

Amino Acids

37.77

Weight (kDa)

5.13

Isoelectric Point (pI)

70.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70210
fragaria_vesca FvH4_4g34970
malus_domestica MD13G1087200.v1.1 MD16G1087700.v1.1
prunus_persica Prupe.1G259100_v2.0.a1 Prupe.1G259100_v2.0.a1
pyrus_communis pycom13g07520 pycom16g07520
rosa_chinensis RchiOBHm_Chr4g0444481
rosa_laevigata RLG00000005830
rosa_multiflora Rmu_co8344649.1_g000001
rosa_roxburghii Rroxscaffold_5G00384970
rosa_rugosa Rorug04G0353100 Rorug04G0353100
rosa_samantha Rh4AG413300 Rh4BG424800 Rh4CG439400 Rh4DG420300
rosa_wichuraiana Rw4G035500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 440
AccI GTMKAC 1 cut(s) 5
AccII CGCG 2 cut(s) 47, 603
AccIII TCCGGA 2 cut(s) 56, 68
AciI CCGC 7 cut(s) 47, 213, 322, 325, 332, 472, 674
AclWI GGATC 4 cut(s) 312, 432, 513, 560
AcoI YGGCCR 2 cut(s) 347, 656
AcuI CTGAAG 2 cut(s) 413, 517
AcyI GRCGYC 1 cut(s) 207
AfiI CCNNNNNNNGG 4 cut(s) 234, 478, 744, 868
AgsI TTSAA 3 cut(s) 269, 650, 722
AhdI GACNNNNNGTC 1 cut(s) 904
AjiI CACGTC 1 cut(s) 97
AjnI CCWGG 1 cut(s) 630
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AluBI AGCT 6 cut(s) 18, 386, 484, 537, 562, 642
AluI AGCT 6 cut(s) 18, 386, 484, 537, 562, 642
Alw21I GWGCWC 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 186
AlwI GGATC 4 cut(s) 312, 432, 513, 560
Aor13HI TCCGGA 2 cut(s) 56, 68
AoxI GGCC 2 cut(s) 347, 656
ApeKI GCWGC 4 cut(s) 386, 671, 677, 692
AseI ATTAAT 1 cut(s) 791
AspLEI GCGC 3 cut(s) 47, 153, 605
AspS9I GGNCC 2 cut(s) 34, 247
AsuC2I CCSGG 1 cut(s) 165
AsuHPI GGTGA 3 cut(s) 202, 828, 939
AsuII TTCGAA 1 cut(s) 456
AvaII GGWCC 2 cut(s) 34, 247
BalI TGGCCA 1 cut(s) 658
BanI GGYRCC 1 cut(s) 440
BanII GRGCYC 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 1 cut(s) 20
BbvI GCAGC 4 cut(s) 373, 658, 689, 704
BccI CCATC 5 cut(s) 388, 472, 667, 746, 943
BceAI ACGGC 2 cut(s) 294, 588
BcgI CGANNNNNNTGC 2 cut(s) 212, 246
BciT130I CCWGG 1 cut(s) 632
BcnI CCSGG 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 186
BfaI CTAG 2 cut(s) 639, 803
BfmI CTRYAG 1 cut(s) 690
BfoI RGCGCY 1 cut(s) 154
BglII AGATCT 1 cut(s) 799
BisI GCNGC 7 cut(s) 325, 332, 387, 672, 675, 678, 693
BlpI GCTNAGC 1 cut(s) 494
BlsI GCNGC 7 cut(s) 326, 333, 388, 673, 676, 679, 694
Bme1390I CCNGG 2 cut(s) 165, 632
Bme18I GGWCC 2 cut(s) 34, 247
BmeRI GACNNNNNGTC 1 cut(s) 904
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 2 cut(s) 34, 247
BmiI GGNNCC 3 cut(s) 402, 411, 442
BmrFI CCNGG 2 cut(s) 165, 632
BmsI GCATC 3 cut(s) 135, 342, 770
BpiI GAAGAC 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 382
Bpu1102I GCTNAGC 1 cut(s) 494
Bpu14I TTCGAA 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 165
Bsa29I ATCGAT 2 cut(s) 787, 917
BsaHI GRCGYC 1 cut(s) 207
BsaJI CCNNGG 2 cut(s) 163, 606
BsaWI WCCGGW 2 cut(s) 56, 68
BsaXI ACNNNNNCTCC 2 cut(s) 843, 873
Bsc4I CCNNNNNNNGG 4 cut(s) 234, 478, 744, 868
Bse3DI GCAATG 1 cut(s) 666
BseAI TCCGGA 2 cut(s) 56, 68
BseBI CCWGG 1 cut(s) 632
BseCI ATCGAT 2 cut(s) 787, 917
BseDI CCNNGG 2 cut(s) 163, 606
BseGI GGATG 1 cut(s) 483
BseLI CCNNNNNNNGG 4 cut(s) 234, 478, 744, 868
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 2 cut(s) 209, 485
BseXI GCAGC 4 cut(s) 373, 658, 689, 704
Bsh1236I CGCG 2 cut(s) 47, 603
BshFI GGCC 2 cut(s) 349, 658
BshNI GGYRCC 1 cut(s) 440
BshVI ATCGAT 2 cut(s) 787, 917
BsiHKAI GWGCWC 1 cut(s) 20
BsiSI CCGG 6 cut(s) 57, 69, 80, 107, 132, 165
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 4 cut(s) 234, 478, 744, 868
BsmAI GTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 146
BsmI GAATGC 2 cut(s) 89, 128
BsnI GGCC 2 cut(s) 349, 658
Bsp119I TTCGAA 1 cut(s) 456
Bsp1286I GDGCHC 1 cut(s) 20
Bsp13I TCCGGA 2 cut(s) 56, 68
Bsp143I GATC 6 cut(s) 304, 424, 518, 565, 799, 918
Bsp1720I GCTNAGC 1 cut(s) 494
BspACI CCGC 7 cut(s) 47, 213, 322, 325, 332, 472, 674
BspANI GGCC 2 cut(s) 349, 658
BspCNI CTCAG 2 cut(s) 208, 486
BspDI ATCGAT 2 cut(s) 787, 917
BspEI TCCGGA 2 cut(s) 56, 68
BspFNI CGCG 2 cut(s) 47, 603
BspLI GGNNCC 3 cut(s) 402, 411, 442
BspMAI CTGCAG 1 cut(s) 694
BspPI GGATC 4 cut(s) 312, 432, 513, 560
BspT104I TTCGAA 1 cut(s) 456
BspT107I GGYRCC 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 666
BssECI CCNNGG 2 cut(s) 163, 606
BssMI GATC 6 cut(s) 304, 424, 518, 565, 799, 918
BssNI GRCGYC 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 5 cut(s) 10, 26, 66, 469, 871
BstACI GRCGYC 1 cut(s) 207
BstBI TTCGAA 1 cut(s) 456
BstC8I GCNNGC 5 cut(s) 329, 336, 373, 556, 560
BstDEI CTNAG 5 cut(s) 195, 382, 390, 494, 758
BstDSI CCRYGG 1 cut(s) 606
BstF5I GGATG 1 cut(s) 483
BstFNI CGCG 2 cut(s) 47, 603
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 3 cut(s) 47, 153, 605
BstKTI GATC 6 cut(s) 307, 427, 521, 568, 802, 921
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 6 cut(s) 304, 424, 518, 565, 799, 918
BstMWI GCNNNNNNNGC 5 cut(s) 123, 372, 490, 551, 677
BstNI CCWGG 1 cut(s) 632
BstNSI RCATGY 2 cut(s) 558, 737
BstSCI CCNGG 2 cut(s) 163, 630
BstSFI CTRYAG 1 cut(s) 690
BstUI CGCG 2 cut(s) 47, 603
BstV1I GCAGC 4 cut(s) 373, 658, 689, 704
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 2 cut(s) 424, 799
BstYI RGATCY 2 cut(s) 424, 799
Bsu15I ATCGAT 2 cut(s) 787, 917
BsuRI GGCC 2 cut(s) 349, 658
BsuTUI ATCGAT 2 cut(s) 787, 917
BtgI CCRYGG 1 cut(s) 606
BtgZI GCGATG 2 cut(s) 112, 526
BtrI CACGTC 1 cut(s) 97
BtsCI GGATG 1 cut(s) 483
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 5 cut(s) 329, 336, 373, 556, 560
CfoI GCGC 3 cut(s) 47, 153, 605
Cfr13I GGNCC 2 cut(s) 34, 247
ClaI ATCGAT 2 cut(s) 787, 917
CviAII CATG 5 cut(s) 234, 555, 663, 734, 744
DdeI CTNAG 5 cut(s) 195, 382, 390, 494, 758
DpnI GATC 6 cut(s) 306, 426, 520, 567, 801, 920
DpnII GATC 6 cut(s) 304, 424, 518, 565, 799, 918
DriI GACNNNNNGTC 1 cut(s) 904
EaeI YGGCCR 2 cut(s) 347, 656
Eam1105I GACNNNNNGTC 1 cut(s) 904
Ecl136II GAGCTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 20
Eco32I GATATC 1 cut(s) 613
Eco47I GGWCC 2 cut(s) 34, 247
Eco53kI GAGCTC 1 cut(s) 18
Eco57I CTGAAG 2 cut(s) 413, 517
EcoICRI GAGCTC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 630
EcoRV GATATC 1 cut(s) 613
EcoT22I ATGCAT 2 cut(s) 128, 668
EcoT38I GRGCYC 1 cut(s) 20
FaeI CATG 5 cut(s) 237, 558, 666, 737, 747
FalI AAGNNNNNCTT 2 cut(s) 355, 387
FaqI GGGAC 1 cut(s) 146
FatI CATG 5 cut(s) 233, 554, 662, 733, 743
FauI CCCGC 1 cut(s) 329
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 7 cut(s) 325, 332, 387, 672, 675, 678, 693
FokI GGATG 1 cut(s) 490
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 7 cut(s) 325, 332, 387, 672, 675, 678, 693
FspBI CTAG 2 cut(s) 639, 803
GlaI GCGC 3 cut(s) 46, 152, 604
GluI GCNGC 7 cut(s) 325, 332, 387, 672, 675, 678, 693
HaeII RGCGCY 1 cut(s) 154
HaeIII GGCC 2 cut(s) 349, 658
HapII CCGG 6 cut(s) 57, 69, 80, 107, 132, 165
HhaI GCGC 3 cut(s) 47, 153, 605
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 5 cut(s) 237, 558, 666, 737, 747
Hin6I GCGC 3 cut(s) 45, 151, 603
HinP1I GCGC 3 cut(s) 45, 151, 603
HincII GTYRAC 2 cut(s) 6, 295
HindII GTYRAC 2 cut(s) 6, 295
HpaI GTTAAC 1 cut(s) 295
HpaII CCGG 6 cut(s) 57, 69, 80, 107, 132, 165
HphI GGTGA 3 cut(s) 202, 828, 939
Hpy166II GTNNAC 2 cut(s) 6, 295
Hpy188I TCNGA 8 cut(s) 22, 34, 94, 779, 822, 863, 898, 1015
Hpy188III TCNNGA 4 cut(s) 57, 69, 647, 706
Hpy8I GTNNAC 2 cut(s) 6, 295
Hpy99I CGWCG 2 cut(s) 94, 209
HpyAV CCTTC 4 cut(s) 137, 423, 431, 541
HpyCH4III ACNGT 5 cut(s) 10, 26, 66, 469, 871
HpyCH4IV ACGT 2 cut(s) 96, 207
HpyCH4V TGCA 8 cut(s) 126, 233, 355, 554, 558, 666, 692, 796
HpyF10VI GCNNNNNNNGC 5 cut(s) 123, 372, 490, 551, 677
HpyF3I CTNAG 5 cut(s) 195, 382, 390, 494, 758
HpySE526I ACGT 2 cut(s) 96, 207
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 5 cut(s) 237, 558, 666, 737, 747
HspAI GCGC 3 cut(s) 45, 151, 603
Kpn2I TCCGGA 2 cut(s) 56, 68
KspAI GTTAAC 1 cut(s) 295
Kzo9I GATC 6 cut(s) 304, 424, 518, 565, 799, 918
LmnI GCTCC 3 cut(s) 15, 148, 481
Lsp1109I GCAGC 4 cut(s) 373, 658, 689, 704
LweI GCATC 3 cut(s) 135, 342, 770
MaeI CTAG 2 cut(s) 639, 803
MaeII ACGT 2 cut(s) 96, 207
MaeIII GTNAC 5 cut(s) 208, 254, 714, 865, 945
MalI GATC 6 cut(s) 306, 426, 520, 567, 801, 920
MboI GATC 6 cut(s) 304, 424, 518, 565, 799, 918
MboII GAAGA 4 cut(s) 62, 131, 419, 921
MflI RGATCY 2 cut(s) 424, 799
MhlI GDGCHC 1 cut(s) 20
MlsI TGGCCA 1 cut(s) 658
MluNI TGGCCA 1 cut(s) 658
MlyI GAGTC 4 cut(s) 47, 83, 218, 893
MmeI TCCRAC 6 cut(s) 72, 402, 593, 790, 800, 880
MnlI CCTC 6 cut(s) 391, 414, 504, 879, 919, 960
Mox20I TGGCCA 1 cut(s) 658
Mph1103I ATGCAT 2 cut(s) 128, 668
MroI TCCGGA 2 cut(s) 56, 68
MscI TGGCCA 1 cut(s) 658
MseI TTAA 3 cut(s) 294, 362, 791
Msp20I TGGCCA 1 cut(s) 658
MspI CCGG 6 cut(s) 57, 69, 80, 107, 132, 165
MspR9I CCNGG 2 cut(s) 165, 632
Mva1269I GAATGC 2 cut(s) 89, 128
MvaI CCWGG 1 cut(s) 632
MvnI CGCG 2 cut(s) 47, 603
MwoI GCNNNNNNNGC 5 cut(s) 123, 372, 490, 551, 677
NciI CCSGG 1 cut(s) 165
NdeII GATC 6 cut(s) 304, 424, 518, 565, 799, 918
NlaIII CATG 5 cut(s) 237, 558, 666, 737, 747
NlaIV GGNNCC 3 cut(s) 402, 411, 442
NmuCI GTSAC 3 cut(s) 208, 714, 945
NsiI ATGCAT 2 cut(s) 128, 668
NspI RCATGY 2 cut(s) 558, 737
NspV TTCGAA 1 cut(s) 456
PaeI GCATGC 1 cut(s) 558
PcsI WCGNNNNNNNCGW 1 cut(s) 902
PctI GAATGC 2 cut(s) 89, 128
PfeI GAWTC 6 cut(s) 101, 135, 238, 635, 709, 740
PfoI TCCNGGA 1 cut(s) 630
PkrI GCNGC 7 cut(s) 326, 333, 388, 673, 676, 679, 694
PleI GAGTC 4 cut(s) 47, 82, 218, 893
PpsI GAGTC 4 cut(s) 47, 82, 218, 893
PshBI ATTAAT 1 cut(s) 791
Psp124BI GAGCTC 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 630
PspGI CCWGG 1 cut(s) 630
PspN4I GGNNCC 3 cut(s) 402, 411, 442
PspPI GGNCC 2 cut(s) 34, 247
PstI CTGCAG 1 cut(s) 694
PsuI RGATCY 2 cut(s) 424, 799
SacI GAGCTC 1 cut(s) 20
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 294, 362, 791
SatI GCNGC 7 cut(s) 325, 332, 387, 672, 675, 678, 693
Sau3AI GATC 6 cut(s) 304, 424, 518, 565, 799, 918
Sau96I GGNCC 2 cut(s) 34, 247
SchI GAGTC 4 cut(s) 47, 83, 218, 893
ScrFI CCNGG 2 cut(s) 165, 632
SduI GDGCHC 1 cut(s) 20
SfaNI GCATC 3 cut(s) 135, 342, 770
SfcI CTRYAG 1 cut(s) 690
SfuI TTCGAA 1 cut(s) 456
SinI GGWCC 2 cut(s) 34, 247
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SphI GCATGC 1 cut(s) 558
SsiI CCGC 7 cut(s) 47, 213, 322, 325, 332, 472, 674
SspI AATATT 1 cut(s) 653
SspMI CTAG 2 cut(s) 639, 803
SstI GAGCTC 1 cut(s) 20
StyD4I CCNGG 2 cut(s) 163, 630
TaaI ACNGT 5 cut(s) 10, 26, 66, 469, 871
TaiI ACGT 2 cut(s) 99, 210
TaqI TCGA 9 cut(s) 5, 141, 171, 204, 456, 564, 787, 890, 917
TauI GCSGC 3 cut(s) 327, 334, 677
TfiI GAWTC 6 cut(s) 101, 135, 238, 635, 709, 740
Tru1I TTAA 3 cut(s) 294, 362, 791
Tru9I TTAA 3 cut(s) 294, 362, 791
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 3 cut(s) 208, 714, 945
TseI GCWGC 4 cut(s) 386, 671, 677, 692
Tsp45I GTSAC 3 cut(s) 208, 714, 945
TspDTI ATGAA 4 cut(s) 127, 529, 571, 714
TspGWI ACGGA 3 cut(s) 217, 280, 623
TspRI CASTG 1 cut(s) 279
VpaK11BI GGWCC 2 cut(s) 34, 247
VspI ATTAAT 1 cut(s) 791
XceI RCATGY 2 cut(s) 558, 737
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 639, 803
ZraI GACGTC 1 cut(s) 208
Zsp2I ATGCAT 2 cut(s) 128, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.