Prupe.1G259100_v2.0.a1

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012007
Physical Location & Seq
Reverse (-)
26851527 .. 26854758
3232 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G259100.2

Sequence Viewer

Length: 1011 bp
ATGTCATCGGTTTGGAGCTCCGACTGCTTCTCCGACCTACTGTGCTGCGAGGACTACTCCGGAATTCTGTCCGGAGAGTCGCCGGAATGCTCGTCGGACTTGGAATCTCCGGCGTGTAGCGAAGAATCCATCGCCGGATTCATAGAGGACGAGCGCAACTACGTCCCCGGCTTCGACTACTTGTCTCGCTTCAACTCCGATCATTCCCTCGACATCTCCGCCCGAGCCGACTCCGTTGCATGGATTCTGAAGGTCCAGAGTTACTACGGGTTTCACCCGCTGACGGCGTATCTCTCCGTTAACTACTTGGATCGGTTCTTGTACTCCCGCCGGTTGCCGCAAGCAAATGGGTGGCCAATGCAACTTTTAAGTGTTGCTTGCTTGTCCTTAGCTGCTAAGATGGAGGAACCTCTAGTTCCTTCTCTGTTAGATTTACAGGTGGAAGGTACGCAATTTATCTTCGAACCGAGAACAATCCGTAGGATGGAGCTCCTTGTGCTGGGTGTTTTGGATTGGAGGCTACGATCCATAACACCCTTCAGCTTCGTCGCTTTCTTTGCATGCAAGCTCGACCCAGCGGCAACTTTCATCGGATTTCTGGTTTCACGGGCCACAGAAATCATATTATCGAATATCAAAGAAGCTAGCTTTCTTGAATATTGGCCATCATGCATTGCTGCGGCAGCCATACTTTCCGCAGCCAATGAAATCCCTAATTTGTCGCTTGAAAATCCGGAACATGCTGAATCATGGTGTGGTGGACTGAGCAAAGAGAAAATCATCGGATGCTATCGATTAATGCAAGAAGTGGTGGTTGAAAATAGTGGGATAAAAAAGTCATCACCCGATGTTTTGCCACAGCTTCGAGTTACGGTTCGGGGCAGAGTGAGGTCCAGTTCTGAGTCATCGTCCTCGTCAGTCTCCTTATCATCATCATCACCAATGTCATATAAAAGGAGGAAATTGAATAACTGCTTATGGGTAGACGATGACAAGGGAAACTCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

337

Amino Acids

37.39

Weight (kDa)

4.89

Isoelectric Point (pI)

64.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70210
fragaria_vesca FvH4_4g34970
malus_domestica MD13G1087200.v1.1 MD16G1087700.v1.1
prunus_persica Prupe.1G259100_v2.0.a1 Prupe.1G259100_v2.0.a1
pyrus_communis pycom13g07520 pycom16g07520
rosa_chinensis RchiOBHm_Chr4g0444481
rosa_laevigata RLG00000005830
rosa_multiflora Rmu_co8344649.1_g000001
rosa_roxburghii Rroxscaffold_5G00384970
rosa_rugosa Rorug04G0353100 Rorug04G0353100
rosa_samantha Rh4AG413300 Rh4BG424800 Rh4CG439400 Rh4DG420300
rosa_wichuraiana Rw4G035500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 984
AccIII TCCGGA 3 cut(s) 59, 71, 733
AciI CCGC 7 cut(s) 219, 278, 328, 338, 578, 680, 696
AclWI GGATC 2 cut(s) 318, 519
AcoI YGGCCR 2 cut(s) 353, 662
AcsI RAATTY 1 cut(s) 63
AcuI CTGAAG 2 cut(s) 269, 523
AfaI GTAC 2 cut(s) 323, 448
AfiI CCNNNNNNNGG 4 cut(s) 240, 283, 484, 499
AgsI TTSAA 5 cut(s) 193, 656, 728, 818, 967
AhdI GACNNNNNGTC 1 cut(s) 181
AluBI AGCT 8 cut(s) 18, 392, 490, 543, 568, 644, 648, 862
AluI AGCT 8 cut(s) 18, 392, 490, 543, 568, 644, 648, 862
Alw21I GWGCWC 2 cut(s) 20, 492
Alw26I GTCTC 2 cut(s) 189, 925
AlwI GGATC 2 cut(s) 318, 519
Ama87I CYCGRG 1 cut(s) 222
Aor13HI TCCGGA 3 cut(s) 59, 71, 733
AoxI GGCC 3 cut(s) 353, 609, 662
ApeKI GCWGC 5 cut(s) 45, 392, 677, 683, 698
ApoI RAATTY 1 cut(s) 63
AseI ATTAAT 1 cut(s) 797
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 3 cut(s) 253, 609, 891
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 3 cut(s) 266, 834, 930
AsuII TTCGAA 1 cut(s) 462
AsuNHI GCTAGC 1 cut(s) 644
AvaI CYCGRG 1 cut(s) 222
AvaII GGWCC 2 cut(s) 253, 891
BalI TGGCCA 2 cut(s) 355, 664
BanII GRGCYC 2 cut(s) 20, 492
Bbv12I GWGCWC 2 cut(s) 20, 492
BbvI GCAGC 5 cut(s) 32, 379, 664, 695, 710
BccI CCATC 4 cut(s) 137, 394, 478, 673
BceAI ACGGC 1 cut(s) 300
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 189, 925
BfaI CTAG 2 cut(s) 413, 645
BisI GCNGC 8 cut(s) 46, 338, 393, 579, 678, 681, 684, 699
BlsI GCNGC 8 cut(s) 47, 339, 394, 580, 679, 682, 685, 700
Bme1390I CCNGG 1 cut(s) 168
Bme18I GGWCC 2 cut(s) 253, 891
BmeRI GACNNNNNGTC 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 222
BmgT120I GGNCC 3 cut(s) 253, 609, 891
BmiI GGNNCC 1 cut(s) 408
BmrFI CCNGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 776
BmtI GCTAGC 1 cut(s) 648
BplI GAGNNNNNCTC 2 cut(s) 41, 73
Bpu10I CCTNAGC 1 cut(s) 388
Bpu14I TTCGAA 1 cut(s) 462
BpuMI CCSGG 1 cut(s) 168
Bsa29I ATCGAT 1 cut(s) 793
BsaJI CCNNGG 1 cut(s) 166
BsaWI WCCGGW 3 cut(s) 59, 71, 733
BsaXI ACNNNNNCTCC 2 cut(s) 14, 44
Bsc4I CCNNNNNNNGG 4 cut(s) 240, 283, 484, 499
Bse118I RCCGGY 1 cut(s) 330
Bse1I ACTGG 1 cut(s) 894
Bse3DI GCAATG 1 cut(s) 672
BseAI TCCGGA 3 cut(s) 59, 71, 733
BseCI ATCGAT 1 cut(s) 793
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 2 cut(s) 489, 791
BseLI CCNNNNNNNGG 4 cut(s) 240, 283, 484, 499
BseMI GCAATG 1 cut(s) 672
BseMII CTCAG 2 cut(s) 755, 891
BseNI ACTGG 1 cut(s) 894
BseXI GCAGC 5 cut(s) 32, 379, 664, 695, 710
BseYI CCCAGC 2 cut(s) 499, 574
BshFI GGCC 3 cut(s) 355, 611, 664
BshVI ATCGAT 1 cut(s) 793
BsiHKAI GWGCWC 2 cut(s) 20, 492
BsiHKCI CYCGRG 1 cut(s) 222
BsiSI CCGG 8 cut(s) 60, 72, 83, 110, 135, 168, 331, 734
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 4 cut(s) 240, 283, 484, 499
BsmAI GTCTC 2 cut(s) 189, 925
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 92
BsnI GGCC 3 cut(s) 355, 611, 664
BsoBI CYCGRG 1 cut(s) 222
Bsp119I TTCGAA 1 cut(s) 462
Bsp1286I GDGCHC 2 cut(s) 20, 492
Bsp13I TCCGGA 3 cut(s) 59, 71, 733
Bsp143I GATC 3 cut(s) 199, 310, 524
BspACI CCGC 7 cut(s) 219, 278, 328, 338, 578, 680, 696
BspANI GGCC 3 cut(s) 355, 611, 664
BspCNI CTCAG 2 cut(s) 756, 892
BspDI ATCGAT 1 cut(s) 793
BspEI TCCGGA 3 cut(s) 59, 71, 733
BspLI GGNNCC 1 cut(s) 408
BspOI GCTAGC 1 cut(s) 648
BspPI GGATC 2 cut(s) 318, 519
BspT104I TTCGAA 1 cut(s) 462
BsrDI GCAATG 1 cut(s) 672
BsrFI RCCGGY 1 cut(s) 330
BsrI ACTGG 1 cut(s) 894
BssAI RCCGGY 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 3 cut(s) 199, 310, 524
Bst4CI ACNGT 2 cut(s) 42, 874
BstBI TTCGAA 1 cut(s) 462
BstC8I GCNNGC 5 cut(s) 342, 379, 562, 566, 646
BstDEI CTNAG 4 cut(s) 388, 396, 764, 900
BstF5I GGATG 2 cut(s) 489, 791
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 3 cut(s) 202, 313, 527
BstMAI GTCTC 2 cut(s) 189, 925
BstMBI GATC 3 cut(s) 199, 310, 524
BstMWI GCNNNNNNNGC 4 cut(s) 24, 496, 557, 683
BstNSI RCATGY 2 cut(s) 564, 743
BstSCI CCNGG 1 cut(s) 166
BstV1I GCAGC 5 cut(s) 32, 379, 664, 695, 710
Bsu15I ATCGAT 1 cut(s) 793
BsuRI GGCC 3 cut(s) 355, 611, 664
BsuTUI ATCGAT 1 cut(s) 793
BtgZI GCGATG 1 cut(s) 115
BtsCI GGATG 2 cut(s) 489, 791
Cac8I GCNNGC 5 cut(s) 342, 379, 562, 566, 646
CfoI GCGC 1 cut(s) 156
Cfr10I RCCGGY 1 cut(s) 330
Cfr13I GGNCC 3 cut(s) 253, 609, 891
ClaI ATCGAT 1 cut(s) 793
Csp6I GTAC 2 cut(s) 322, 447
CviAII CATG 5 cut(s) 240, 561, 669, 740, 750
CviQI GTAC 2 cut(s) 322, 447
DdeI CTNAG 4 cut(s) 388, 396, 764, 900
DpnI GATC 3 cut(s) 201, 312, 526
DpnII GATC 3 cut(s) 199, 310, 524
DriI GACNNNNNGTC 1 cut(s) 181
EaeI YGGCCR 2 cut(s) 353, 662
Eam1105I GACNNNNNGTC 1 cut(s) 181
EciI GGCGGA 1 cut(s) 208
Ecl136II GAGCTC 2 cut(s) 18, 490
Eco24I GRGCYC 2 cut(s) 20, 492
Eco47I GGWCC 2 cut(s) 253, 891
Eco53kI GAGCTC 2 cut(s) 18, 490
Eco57I CTGAAG 2 cut(s) 269, 523
Eco88I CYCGRG 1 cut(s) 222
EcoICRI GAGCTC 2 cut(s) 18, 490
EcoRI GAATTC 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 674
EcoT38I GRGCYC 2 cut(s) 20, 492
FaeI CATG 5 cut(s) 243, 564, 672, 743, 753
FalI AAGNNNNNCTT 2 cut(s) 361, 393
FaqI GGGAC 1 cut(s) 149
FatI CATG 5 cut(s) 239, 560, 668, 739, 749
FauI CCCGC 2 cut(s) 285, 335
FblI GTMKAC 1 cut(s) 984
Fnu4HI GCNGC 8 cut(s) 46, 338, 393, 579, 678, 681, 684, 699
FokI GGATG 2 cut(s) 496, 798
FriOI GRGCYC 2 cut(s) 20, 492
Fsp4HI GCNGC 8 cut(s) 46, 338, 393, 579, 678, 681, 684, 699
FspBI CTAG 2 cut(s) 413, 645
GlaI GCGC 1 cut(s) 155
GluI GCNGC 8 cut(s) 46, 338, 393, 579, 678, 681, 684, 699
GsaI CCCAGC 2 cut(s) 503, 578
HaeIII GGCC 3 cut(s) 355, 611, 664
HapII CCGG 8 cut(s) 60, 72, 83, 110, 135, 168, 331, 734
HhaI GCGC 1 cut(s) 156
Hin1II CATG 5 cut(s) 243, 564, 672, 743, 753
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 8 cut(s) 77, 104, 125, 138, 230, 244, 746, 902
HpaI GTTAAC 1 cut(s) 301
HpaII CCGG 8 cut(s) 60, 72, 83, 110, 135, 168, 331, 734
HphI GGTGA 3 cut(s) 266, 834, 930
Hpy166II GTNNAC 3 cut(s) 301, 761, 985
Hpy188I TCNGA 9 cut(s) 22, 34, 97, 199, 249, 593, 785, 901, 1006
Hpy188III TCNNGA 5 cut(s) 60, 72, 256, 653, 734
Hpy8I GTNNAC 3 cut(s) 301, 761, 985
Hpy99I CGWCG 2 cut(s) 97, 551
HpyAV CCTTC 4 cut(s) 244, 429, 437, 547
HpyCH4III ACNGT 2 cut(s) 42, 874
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 6 cut(s) 239, 361, 560, 564, 672, 802
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 496, 557, 683
HpyF3I CTNAG 4 cut(s) 388, 396, 764, 900
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 5 cut(s) 243, 564, 672, 743, 753
HspAI GCGC 1 cut(s) 154
Kpn2I TCCGGA 3 cut(s) 59, 71, 733
KspAI GTTAAC 1 cut(s) 301
Kzo9I GATC 3 cut(s) 199, 310, 524
LmnI GCTCC 4 cut(s) 15, 23, 487, 495
Lsp1109I GCAGC 5 cut(s) 32, 379, 664, 695, 710
LweI GCATC 1 cut(s) 776
MaeI CTAG 2 cut(s) 413, 645
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 260, 868
MalI GATC 3 cut(s) 201, 312, 526
MboI GATC 3 cut(s) 199, 310, 524
MboII GAAGA 2 cut(s) 134, 451
MhlI GDGCHC 2 cut(s) 20, 492
MlsI TGGCCA 2 cut(s) 355, 664
MluCI AATT 4 cut(s) 63, 452, 715, 962
MluNI TGGCCA 2 cut(s) 355, 664
MlyI GAGTC 3 cut(s) 86, 224, 911
MmeI TCCRAC 3 cut(s) 45, 57, 75
MnlI CCTC 9 cut(s) 43, 139, 218, 397, 420, 510, 882, 922, 951
Mox20I TGGCCA 2 cut(s) 355, 664
Mph1103I ATGCAT 1 cut(s) 674
MroI TCCGGA 3 cut(s) 59, 71, 733
MscI TGGCCA 2 cut(s) 355, 664
MseI TTAA 3 cut(s) 300, 368, 797
Msp20I TGGCCA 2 cut(s) 355, 664
MspA1I CMGCKG 2 cut(s) 280, 578
MspI CCGG 8 cut(s) 60, 72, 83, 110, 135, 168, 331, 734
MspR9I CCNGG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 92
MwoI GCNNNNNNNGC 4 cut(s) 24, 496, 557, 683
NciI CCSGG 1 cut(s) 168
NdeII GATC 3 cut(s) 199, 310, 524
NheI GCTAGC 1 cut(s) 644
NlaIII CATG 5 cut(s) 243, 564, 672, 743, 753
NlaIV GGNNCC 1 cut(s) 408
NsiI ATGCAT 1 cut(s) 674
NspI RCATGY 2 cut(s) 564, 743
NspV TTCGAA 1 cut(s) 462
PaeI GCATGC 1 cut(s) 564
PctI GAATGC 1 cut(s) 92
PfeI GAWTC 5 cut(s) 104, 125, 138, 244, 746
PkrI GCNGC 8 cut(s) 47, 339, 394, 580, 679, 682, 685, 700
PleI GAGTC 3 cut(s) 85, 224, 910
PpsI GAGTC 3 cut(s) 85, 224, 910
PshBI ATTAAT 1 cut(s) 797
Psp124BI GAGCTC 2 cut(s) 20, 492
PspFI CCCAGC 2 cut(s) 499, 574
PspN4I GGNNCC 1 cut(s) 408
PspPI GGNCC 3 cut(s) 253, 609, 891
RsaI GTAC 2 cut(s) 323, 448
RsaNI GTAC 2 cut(s) 322, 447
SacI GAGCTC 2 cut(s) 20, 492
SaqAI TTAA 3 cut(s) 300, 368, 797
SatI GCNGC 8 cut(s) 46, 338, 393, 579, 678, 681, 684, 699
Sau3AI GATC 3 cut(s) 199, 310, 524
Sau96I GGNCC 3 cut(s) 253, 609, 891
SchI GAGTC 3 cut(s) 86, 224, 911
ScrFI CCNGG 1 cut(s) 168
SduI GDGCHC 2 cut(s) 20, 492
SfaNI GCATC 1 cut(s) 776
SfuI TTCGAA 1 cut(s) 462
SinI GGWCC 2 cut(s) 253, 891
SphI GCATGC 1 cut(s) 564
Sse9I AATT 4 cut(s) 63, 452, 715, 962
SsiI CCGC 7 cut(s) 219, 278, 328, 338, 578, 680, 696
SspI AATATT 1 cut(s) 659
SspMI CTAG 2 cut(s) 413, 645
SstI GAGCTC 2 cut(s) 20, 492
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 2 cut(s) 42, 874
TaiI ACGT 1 cut(s) 165
TaqI TCGA 7 cut(s) 174, 210, 462, 570, 629, 793, 865
TasI AATT 4 cut(s) 63, 452, 715, 962
TatI WGTACW 1 cut(s) 321
TauI GCSGC 3 cut(s) 340, 581, 683
TfiI GAWTC 5 cut(s) 104, 125, 138, 244, 746
Tru1I TTAA 3 cut(s) 300, 368, 797
Tru9I TTAA 3 cut(s) 300, 368, 797
TseI GCWGC 5 cut(s) 45, 392, 677, 683, 698
TspDTI ATGAA 3 cut(s) 130, 577, 720
TspGWI ACGGA 3 cut(s) 223, 286, 467
VpaK11BI GGWCC 2 cut(s) 253, 891
VspI ATTAAT 1 cut(s) 797
XapI RAATTY 1 cut(s) 63
XceI RCATGY 2 cut(s) 564, 743
XmiI GTMKAC 1 cut(s) 984
XspI CTAG 2 cut(s) 413, 645
Zsp2I ATGCAT 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.