Rorug04G0353100

Belongs to the cyclin family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
52503565 .. 52506842
3278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0353100.1

Sequence Viewer

Length: 1479 bp
ATGGCAGAAGTGAGTTCAAGTCTTAAGAATCCTCTGGTTCAAAATCAAGAGAGAAACCATGGAATCGATGCCGAAACATCCCAGCAAGGATTTGGTAGAGATGATGTTATTGAAGAAGCTAAGAAGCAACTATGGCTTGCAGGGCCTCTTATTGCAGTAAGTTTGATGCAGTGTAGCTTACAAATCACGTCAGTCATGTACGTCGGCCATCTCGGAGAGCTTCGGCTTTCCGGTGCCTCTTTGGGCTCTTCGTTTGCTTCGGTCACCGGATACAGTATCTTGTTGGGAATGGGAAGTGCGTTAGAGACGCTATGTGGGCAAGCCTATGGGGCTAAACAGTACCACATGCTTGGAGTCCATATGCAACGAGGAATACTAACACTGTTAGCGGTGAGCATTCCCTTGGCACTCATTTGGTTCTACACAAGCACCATTCTTATTGCTCTTGGCCAAGACCACGAGATATCCAACGAAGCAGGAACTTTCAATCGATGGATGATGCCGAGTCTTTTCGCGTACAGCCTCCTTCAATGCCTCAATAGATTCTTACAGACACAAAACAATGTGTTTCCAATGATGATAAGCTCTGCAATCACAGCTTTTCTTCACATTATAATCTGTTGGGCACTTTGTTTGAAATTTGGACTAGGAAGCAAAGGCGCAGCATTGGCCATTAGCATTTCCTATTGGGTTAATGTGTTGTTATTGGCAAGTTATGTGATGTTCTCGCCGGTCTGCAAGAACACTTGGACAGGATTTACGAAAGAGGCATTGCATGATATCTTAAGCTTTATCAAGCTTGCCGTTCCATCAGCTATAATGATATGTTTTGAATATTGGACATTCGAAATGGTTGTTCTCTTGTCCGGTCTCCTCCCAAATCCAAAACTTGAGACATCTGTGTTATCTATAAGCCTTAACACATGTTGGATGGTCTATATGATATCAGTTGGTCTTGGCAGTGCTATAAGTACAAGAGTGTCAAATGAATTGGGTGCCGGGTGGCCACAAAGTGCACGATTAGCTCTACAAGTCATGATCACAATGGCTTTATCCGAGGGTGCCGCTATAGCAATAGCCACAGTATTGGTTCGCCGTGTTTGGGGAGTACTATACAGCAACGAGAATGAAGTGATCAGATATGTTGCTGAAATGATGCCACTGCTTGCACTATCTGACTTCTTGGATGGATTCCAATGCGTTCTTTCAGGGGCTGCCAGGGGGTGTGGATGGCAAAATCTTTGTGTATGCATAAACCTTGGGGCTTATTATGTTGTGGGAATTCCTAGTGCAGTGCTTTTTGCTTTCATCCTTCATATTGGAGGCATGGGGCTTTGGATGGGTATCATTTGTGCACTTTTTGTTCAAGTTACTGCACTTGTTGCAGTAAATGCCTGCACCGACTGGTATCAAGAGGCCATGAAAGCTGCTCATAGAGTTCAGAATACCAGCTTGGTGATTGACAAGGCATTAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

492

Amino Acids

53.54

Weight (kDa)

6.31

Isoelectric Point (pI)

31.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 49 - 208 1.6e-37 MatE
MatE PF01554 270 - 432 5.6e-27 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012007)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 614
AccB1I GGYRCC 3 cut(s) 233, 995, 1061
AccII CGCG 1 cut(s) 515
AciI CCGC 2 cut(s) 389, 1065
AcoI YGGCCR 4 cut(s) 205, 448, 669, 1004
AcsI RAATTY 2 cut(s) 638, 1281
AdeI CACNNNGTG 1 cut(s) 1013
AfaI GTAC 5 cut(s) 200, 341, 518, 973, 1110
AfiI CCNNNNNNNGG 1 cut(s) 1102
AflII CTTAAG 2 cut(s) 23, 784
AflIII ACRYGT 1 cut(s) 923
AgsI TTSAA 8 cut(s) 18, 41, 113, 487, 530, 637, 833, 1367
AjiI CACGTC 1 cut(s) 189
AjnI CCWGG 1 cut(s) 1217
AjuI GAANNNNNNNTTGG 2 cut(s) 1436, 1468
Alw21I GWGCWC 2 cut(s) 1018, 1357
Alw26I GTCTC 3 cut(s) 299, 875, 887
Alw44I GTGCAC 2 cut(s) 1014, 1353
AlwNI CAGNNNCTG 1 cut(s) 1214
AoxI GGCC 6 cut(s) 143, 205, 448, 669, 1004, 1416
ApaLI GTGCAC 2 cut(s) 1014, 1353
ApeKI GCWGC 3 cut(s) 662, 1214, 1427
ApoI RAATTY 2 cut(s) 638, 1281
AspLEI GCGC 1 cut(s) 662
AspS9I GGNCC 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 1000
AsuHPI GGTGA 3 cut(s) 256, 403, 1468
AsuII TTCGAA 1 cut(s) 846
BaeGI GKGCMC 3 cut(s) 628, 1018, 1357
BalI TGGCCA 3 cut(s) 450, 671, 1006
BanI GGYRCC 3 cut(s) 233, 995, 1061
BanII GRGCYC 1 cut(s) 248
BauI CACGAG 1 cut(s) 458
Bbv12I GWGCWC 2 cut(s) 1018, 1357
BbvI GCAGC 3 cut(s) 674, 1201, 1414
BccI CCATC 7 cut(s) 216, 486, 817, 925, 1181, 1224, 1333
BceAI ACGGC 2 cut(s) 788, 1080
BciT130I CCWGG 1 cut(s) 1219
BciVI GTATCC 1 cut(s) 263
BclI TGATCA 2 cut(s) 1038, 1134
BcnI CCSGG 1 cut(s) 1000
BcoDI GTCTC 3 cut(s) 299, 875, 887
BfaI CTAG 2 cut(s) 647, 1287
BfmI CTRYAG 1 cut(s) 1068
BfrI CTTAAG 2 cut(s) 23, 784
BfuI GTATCC 1 cut(s) 263
BglI GCCNNNNNGGC 1 cut(s) 329
BisI GCNGC 4 cut(s) 663, 1065, 1215, 1428
BlsI GCNGC 4 cut(s) 664, 1066, 1216, 1429
BmcAI AGTACT 1 cut(s) 1110
Bme1390I CCNGG 2 cut(s) 1000, 1219
BmgBI CACGTC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 3 cut(s) 235, 997, 1063
BmrFI CCNGG 2 cut(s) 1000, 1219
BmsI GCATC 4 cut(s) 58, 156, 489, 1146
Bpu14I TTCGAA 1 cut(s) 846
BpuEI CTTGAG 1 cut(s) 911
BpuMI CCSGG 1 cut(s) 1000
Bsa29I ATCGAT 2 cut(s) 66, 490
BsaBI GATNNNNATC 1 cut(s) 1343
BsaI GGTCTC 1 cut(s) 875
BsaJI CCNNGG 5 cut(s) 58, 402, 1056, 1218, 1258
BsaWI WCCGGW 3 cut(s) 230, 266, 866
Bsc4I CCNNNNNNNGG 1 cut(s) 1102
Bse118I RCCGGY 1 cut(s) 730
Bse1I ACTGG 1 cut(s) 1409
Bse3DI GCAATG 1 cut(s) 770
Bse8I GATNNNNATC 1 cut(s) 1343
BseBI CCWGG 1 cut(s) 1219
BseCI ATCGAT 2 cut(s) 66, 490
BseDI CCNNGG 5 cut(s) 58, 402, 1056, 1218, 1258
BseGI GGATG 7 cut(s) 77, 501, 936, 1192, 1235, 1308, 1344
BseJI GATNNNNATC 1 cut(s) 1343
BseLI CCNNNNNNNGG 1 cut(s) 1102
BseMI GCAATG 1 cut(s) 770
BseNI ACTGG 1 cut(s) 1409
BseRI GAGGAG 1 cut(s) 863
BseSI GKGCMC 3 cut(s) 628, 1018, 1357
BseXI GCAGC 3 cut(s) 674, 1201, 1414
BseYI CCCAGC 1 cut(s) 81
BsgI GTGCAG 3 cut(s) 1311, 1359, 1381
Bsh1236I CGCG 1 cut(s) 515
BshFI GGCC 6 cut(s) 145, 207, 450, 671, 1006, 1418
BshNI GGYRCC 3 cut(s) 233, 995, 1061
BshVI ATCGAT 2 cut(s) 66, 490
BsiHKAI GWGCWC 2 cut(s) 1018, 1357
BsiSI CCGG 5 cut(s) 231, 267, 731, 867, 999
BslI CCNNNNNNNGG 1 cut(s) 1102
BsmAI GTCTC 3 cut(s) 299, 875, 887
BsmBI CGTCTC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 396
BsnI GGCC 6 cut(s) 145, 207, 450, 671, 1006, 1418
Bso31I GGTCTC 1 cut(s) 875
Bsp119I TTCGAA 1 cut(s) 846
Bsp1286I GDGCHC 4 cut(s) 248, 628, 1018, 1357
Bsp143I GATC 2 cut(s) 1038, 1134
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 2 cut(s) 389, 1065
BspANI GGCC 6 cut(s) 145, 207, 450, 671, 1006, 1418
BspDI ATCGAT 2 cut(s) 66, 490
BspFNI CGCG 1 cut(s) 515
BspHI TCATGA 1 cut(s) 1035
BspLI GGNNCC 3 cut(s) 235, 997, 1063
BspQI GCTCTTC 1 cut(s) 253
BspT104I TTCGAA 1 cut(s) 846
BspT107I GGYRCC 3 cut(s) 233, 995, 1061
BspTI CTTAAG 2 cut(s) 23, 784
BspTNI GGTCTC 1 cut(s) 875
BsrDI GCAATG 1 cut(s) 770
BsrFI RCCGGY 1 cut(s) 730
BsrI ACTGG 1 cut(s) 1409
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 5 cut(s) 58, 402, 1056, 1218, 1258
BssMI GATC 2 cut(s) 1038, 1134
BssSI CACGAG 1 cut(s) 458
BssT1I CCWWGG 3 cut(s) 58, 402, 1258
Bst2BI CACGAG 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 1219
Bst4CI ACNGT 4 cut(s) 275, 339, 384, 1084
Bst6I CTCTTC 1 cut(s) 253
BstAFI CTTAAG 2 cut(s) 23, 784
BstAPI GCANNNNNTGC 2 cut(s) 1382, 1391
BstBI TTCGAA 1 cut(s) 846
BstC8I GCNNGC 5 cut(s) 138, 321, 801, 1167, 1396
BstDEI CTNAG 2 cut(s) 120, 1476
BstDSI CCRYGG 1 cut(s) 58
BstEII GGTNACC 1 cut(s) 262
BstF5I GGATG 7 cut(s) 77, 501, 936, 1192, 1235, 1308, 1344
BstFNI CGCG 1 cut(s) 515
BstHHI GCGC 1 cut(s) 662
BstKTI GATC 2 cut(s) 1041, 1137
BstMAI GTCTC 3 cut(s) 299, 875, 887
BstMBI GATC 2 cut(s) 1038, 1134
BstNI CCWGG 1 cut(s) 1219
BstNSI RCATGY 2 cut(s) 349, 927
BstPI GGTNACC 1 cut(s) 262
BstSCI CCNGG 2 cut(s) 998, 1217
BstSFI CTRYAG 1 cut(s) 1068
BstSLI GKGCMC 3 cut(s) 628, 1018, 1357
BstUI CGCG 1 cut(s) 515
BstV1I GCAGC 3 cut(s) 674, 1201, 1414
BstXI CCANNNNNNTGG 2 cut(s) 350, 1087
Bsu15I ATCGAT 2 cut(s) 66, 490
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 6 cut(s) 145, 207, 450, 671, 1006, 1418
BsuTUI ATCGAT 2 cut(s) 66, 490
BtgI CCRYGG 1 cut(s) 58
BtrI CACGTC 1 cut(s) 189
BtsCI GGATG 7 cut(s) 77, 501, 936, 1192, 1235, 1308, 1344
BtsI GCAGTG 4 cut(s) 176, 967, 1160, 1299
BtsIMutI CAGTG 5 cut(s) 176, 380, 967, 1160, 1299
Cac8I GCNNGC 5 cut(s) 138, 321, 801, 1167, 1396
CaiI CAGNNNCTG 1 cut(s) 1214
CciI TCATGA 1 cut(s) 1035
CfoI GCGC 1 cut(s) 662
Cfr10I RCCGGY 1 cut(s) 730
Cfr13I GGNCC 1 cut(s) 143
ClaI ATCGAT 2 cut(s) 66, 490
CseI GACGC 1 cut(s) 316
Csp6I GTAC 5 cut(s) 199, 340, 517, 972, 1109
CviAII CATG 8 cut(s) 59, 196, 346, 776, 924, 1036, 1327, 1420
CviQI GTAC 5 cut(s) 199, 340, 517, 972, 1109
DdeI CTNAG 2 cut(s) 120, 1476
DpnI GATC 2 cut(s) 1040, 1136
DpnII GATC 2 cut(s) 1038, 1134
DraIII CACNNNGTG 1 cut(s) 1013
EaeI YGGCCR 4 cut(s) 205, 448, 669, 1004
Eam1104I CTCTTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 253
Eco130I CCWWGG 3 cut(s) 58, 402, 1258
Eco24I GRGCYC 1 cut(s) 248
Eco31I GGTCTC 1 cut(s) 875
Eco32I GATATC 3 cut(s) 465, 781, 945
Eco91I GGTNACC 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 143
EcoO65I GGTNACC 1 cut(s) 262
EcoRI GAATTC 1 cut(s) 1281
EcoRII CCWGG 1 cut(s) 1217
EcoRV GATATC 3 cut(s) 465, 781, 945
EcoT14I CCWWGG 3 cut(s) 58, 402, 1258
EcoT22I ATGCAT 1 cut(s) 1253
EcoT38I GRGCYC 1 cut(s) 248
ErhI CCWWGG 3 cut(s) 58, 402, 1258
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 8 cut(s) 62, 199, 349, 779, 927, 1039, 1330, 1423
FatI CATG 8 cut(s) 58, 195, 345, 775, 923, 1035, 1326, 1419
FauNDI CATATG 1 cut(s) 360
FbaI TGATCA 2 cut(s) 1038, 1134
Fnu4HI GCNGC 4 cut(s) 663, 1065, 1215, 1428
FokI GGATG 7 cut(s) 64, 508, 943, 1199, 1242, 1295, 1351
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 4 cut(s) 663, 1065, 1215, 1428
FspBI CTAG 2 cut(s) 647, 1287
GlaI GCGC 1 cut(s) 661
GluI GCNGC 4 cut(s) 663, 1065, 1215, 1428
GsaI CCCAGC 1 cut(s) 85
HaeIII GGCC 6 cut(s) 145, 207, 450, 671, 1006, 1418
HapII CCGG 5 cut(s) 231, 267, 731, 867, 999
HgaI GACGC 1 cut(s) 316
HhaI GCGC 1 cut(s) 662
Hin1II CATG 8 cut(s) 62, 199, 349, 779, 927, 1039, 1330, 1423
Hin6I GCGC 1 cut(s) 660
HinP1I GCGC 1 cut(s) 660
HindIII AAGCTT 2 cut(s) 787, 797
HinfI GANTC 6 cut(s) 28, 63, 354, 505, 543, 1191
HpaII CCGG 5 cut(s) 231, 267, 731, 867, 999
HphI GGTGA 3 cut(s) 256, 403, 1468
Hpy166II GTNNAC 2 cut(s) 1016, 1355
Hpy188I TCNGA 5 cut(s) 215, 1057, 1139, 1177, 1443
Hpy188III TCNNGA 3 cut(s) 47, 1036, 1412
Hpy8I GTNNAC 2 cut(s) 1016, 1355
Hpy99I CGWCG 1 cut(s) 206
HpyAV CCTTC 2 cut(s) 536, 1322
HpyCH4III ACNGT 4 cut(s) 275, 339, 384, 1084
HpyCH4IV ACGT 2 cut(s) 188, 201
HpyF3I CTNAG 2 cut(s) 120, 1476
HpySE526I ACGT 2 cut(s) 188, 201
Hsp92II CATG 8 cut(s) 62, 199, 349, 779, 927, 1039, 1330, 1423
HspAI GCGC 1 cut(s) 660
Ksp22I TGATCA 2 cut(s) 1038, 1134
Kzo9I GATC 2 cut(s) 1038, 1134
LguI GCTCTTC 1 cut(s) 253
Lsp1109I GCAGC 3 cut(s) 674, 1201, 1414
LweI GCATC 4 cut(s) 58, 156, 489, 1146
MaeI CTAG 2 cut(s) 647, 1287
MaeII ACGT 2 cut(s) 188, 201
MaeIII GTNAC 2 cut(s) 262, 1369
MalI GATC 2 cut(s) 1040, 1136
MboI GATC 2 cut(s) 1038, 1134
MboII GAAGA 3 cut(s) 125, 240, 596
MhlI GDGCHC 4 cut(s) 248, 628, 1018, 1357
MlsI TGGCCA 3 cut(s) 450, 671, 1006
MluCI AATT 3 cut(s) 638, 989, 1281
MluNI TGGCCA 3 cut(s) 450, 671, 1006
MlyI GAGTC 2 cut(s) 363, 514
MmeI TCCRAC 2 cut(s) 492, 908
Mox20I TGGCCA 3 cut(s) 450, 671, 1006
Mph1103I ATGCAT 1 cut(s) 1253
MscI TGGCCA 3 cut(s) 450, 671, 1006
MseI TTAA 4 cut(s) 24, 693, 785, 918
Msp20I TGGCCA 3 cut(s) 450, 671, 1006
MspCI CTTAAG 2 cut(s) 23, 784
MspI CCGG 5 cut(s) 231, 267, 731, 867, 999
MspR9I CCNGG 2 cut(s) 1000, 1219
Mva1269I GAATGC 1 cut(s) 396
MvaI CCWGG 1 cut(s) 1219
MvnI CGCG 1 cut(s) 515
NciI CCSGG 1 cut(s) 1000
NcoI CCATGG 1 cut(s) 58
NdeI CATATG 1 cut(s) 360
NdeII GATC 2 cut(s) 1038, 1134
NlaIII CATG 8 cut(s) 62, 199, 349, 779, 927, 1039, 1330, 1423
NlaIV GGNNCC 3 cut(s) 235, 997, 1063
NmeAIII GCCGAG 1 cut(s) 528
NmuCI GTSAC 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 1253
NspI RCATGY 2 cut(s) 349, 927
NspV TTCGAA 1 cut(s) 846
PagI TCATGA 1 cut(s) 1035
PciI ACATGT 1 cut(s) 923
PciSI GCTCTTC 1 cut(s) 253
PctI GAATGC 1 cut(s) 396
PfeI GAWTC 4 cut(s) 28, 63, 543, 1191
PkrI GCNGC 4 cut(s) 664, 1066, 1216, 1429
PleI GAGTC 2 cut(s) 362, 513
PpsI GAGTC 2 cut(s) 362, 513
PscI ACATGT 1 cut(s) 923
PsiI TTATAA 1 cut(s) 614
Psp6I CCWGG 1 cut(s) 1217
PspEI GGTNACC 1 cut(s) 262
PspFI CCCAGC 1 cut(s) 81
PspGI CCWGG 1 cut(s) 1217
PspN4I GGNNCC 3 cut(s) 235, 997, 1063
PspPI GGNCC 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 1214
RsaI GTAC 5 cut(s) 200, 341, 518, 973, 1110
RsaNI GTAC 5 cut(s) 199, 340, 517, 972, 1109
SapI GCTCTTC 1 cut(s) 253
SaqAI TTAA 4 cut(s) 24, 693, 785, 918
SatI GCNGC 4 cut(s) 663, 1065, 1215, 1428
Sau3AI GATC 2 cut(s) 1038, 1134
Sau96I GGNCC 1 cut(s) 143
ScaI AGTACT 1 cut(s) 1110
SchI GAGTC 2 cut(s) 363, 514
ScrFI CCNGG 2 cut(s) 1000, 1219
SduI GDGCHC 4 cut(s) 248, 628, 1018, 1357
SfaNI GCATC 4 cut(s) 58, 156, 489, 1146
SfcI CTRYAG 1 cut(s) 1068
SfuI TTCGAA 1 cut(s) 846
SmlI CTYRAG 3 cut(s) 23, 784, 890
SmoI CTYRAG 3 cut(s) 23, 784, 890
Sse9I AATT 3 cut(s) 638, 989, 1281
SsiI CCGC 2 cut(s) 389, 1065
SspI AATATT 1 cut(s) 836
SspMI CTAG 2 cut(s) 647, 1287
StyD4I CCNGG 2 cut(s) 998, 1217
StyI CCWWGG 3 cut(s) 58, 402, 1258
TaaI ACNGT 4 cut(s) 275, 339, 384, 1084
TaiI ACGT 2 cut(s) 191, 204
TaqI TCGA 3 cut(s) 66, 490, 846
TaqII GACCGA 1 cut(s) 250
TasI AATT 3 cut(s) 638, 989, 1281
TatI WGTACW 2 cut(s) 971, 1108
TauI GCSGC 1 cut(s) 1067
TfiI GAWTC 4 cut(s) 28, 63, 543, 1191
Tru1I TTAA 4 cut(s) 24, 693, 785, 918
Tru9I TTAA 4 cut(s) 24, 693, 785, 918
TscAI CASTG 5 cut(s) 176, 387, 967, 1167, 1299
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 3 cut(s) 662, 1214, 1427
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 5 cut(s) 1002, 1143, 1297, 1304, 1436
TspRI CASTG 5 cut(s) 176, 387, 967, 1167, 1299
Vha464I CTTAAG 2 cut(s) 23, 784
VneI GTGCAC 2 cut(s) 1014, 1353
XapI RAATTY 2 cut(s) 638, 1281
XceI RCATGY 2 cut(s) 349, 927
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XspI CTAG 2 cut(s) 647, 1287
ZrmI AGTACT 1 cut(s) 1110
Zsp2I ATGCAT 1 cut(s) 1253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.