Rmu_co8344649.1_g000001

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8344649.1
OG0012007
Physical Location & Seq
Reverse (-)
1 .. 1020
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8344649.1_g000001.1.cds

Sequence Viewer

Length: 381 bp
cctactacggatttcatccactaacggcgtatctctccgtcaactacttggatcggttcttatattcccgccggttgccgcaagcaaatgggtggccaatgcaacttttaagtgttgcatgcttgtcattagctgccaagatggaggaacctctggttccctcgttgttggatctgcaggttgaaggtgcgaagtttattttcgaacccagaacaatccgaagaatggagcttctagtgctgagtgttttggactggaggctacgatctgtaacaccattctgcttcatcagtttctttgcgctcaagctcgattcaactggaaccttcgttgactttcttattcaacgggccacagaaatcattttagcgaatatccaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

126

Amino Acids

14.55

Weight (kDa)

7.99

Isoelectric Point (pI)

50.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70210
fragaria_vesca FvH4_4g34970
malus_domestica MD13G1087200.v1.1 MD16G1087700.v1.1
prunus_persica Prupe.1G259100_v2.0.a1 Prupe.1G259100_v2.0.a1
pyrus_communis pycom13g07520 pycom16g07520
rosa_chinensis RchiOBHm_Chr4g0444481
rosa_laevigata RLG00000005830
rosa_multiflora Rmu_co8344649.1_g000001
rosa_roxburghii Rroxscaffold_5G00384970
rosa_rugosa Rorug04G0353100 Rorug04G0353100
rosa_samantha Rh4AG413300 Rh4BG424800 Rh4CG439400 Rh4DG420300
rosa_wichuraiana Rw4G035500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 168
AciI CCGC 2 cut(s) 69, 79
AclWI GGATC 2 cut(s) 59, 179
AcoI YGGCCR 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 3 cut(s) 184, 317, 346
AluBI AGCT 3 cut(s) 133, 231, 309
AluI AGCT 3 cut(s) 133, 231, 309
AlwI GGATC 2 cut(s) 59, 179
AoxI GGCC 2 cut(s) 94, 350
ApeKI GCWGC 1 cut(s) 133
AspLEI GCGC 1 cut(s) 303
AspS9I GGNCC 1 cut(s) 350
AsuII TTCGAA 1 cut(s) 203
BalI TGGCCA 1 cut(s) 96
BbvI GCAGC 1 cut(s) 120
BccI CCATC 1 cut(s) 135
BceAI ACGGC 1 cut(s) 41
BfaI CTAG 1 cut(s) 235
BfmI CTRYAG 1 cut(s) 175
BfuAI ACCTGC 1 cut(s) 168
BisI GCNGC 2 cut(s) 79, 134
BlsI GCNGC 2 cut(s) 80, 135
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 3 cut(s) 149, 158, 324
BpmI CTGGAG 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 2 cut(s) 259, 324
BseGI GGATG 1 cut(s) 15
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMII CTCAG 1 cut(s) 232
BseNI ACTGG 2 cut(s) 259, 324
BseXI GCAGC 1 cut(s) 120
BshFI GGCC 2 cut(s) 96, 352
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 225
BsnI GGCC 2 cut(s) 96, 352
Bsp119I TTCGAA 1 cut(s) 203
Bsp143I GATC 3 cut(s) 51, 171, 265
BspACI CCGC 2 cut(s) 69, 79
BspANI GGCC 2 cut(s) 96, 352
BspCNI CTCAG 1 cut(s) 233
BspLI GGNNCC 3 cut(s) 149, 158, 324
BspMAI CTGCAG 1 cut(s) 179
BspMI ACCTGC 1 cut(s) 168
BspPI GGATC 2 cut(s) 59, 179
BspT104I TTCGAA 1 cut(s) 203
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 2 cut(s) 259, 324
BssAI RCCGGY 1 cut(s) 71
BssMI GATC 3 cut(s) 51, 171, 265
BstBI TTCGAA 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 83, 120
BstDEI CTNAG 1 cut(s) 241
BstF5I GGATG 1 cut(s) 15
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 3 cut(s) 54, 174, 268
BstMBI GATC 3 cut(s) 51, 171, 265
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstNSI RCATGY 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BsuRI GGCC 2 cut(s) 96, 352
BtsCI GGATG 1 cut(s) 15
BveI ACCTGC 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 83, 120
CfoI GCGC 1 cut(s) 303
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 350
CviAII CATG 1 cut(s) 119
CviJI RGCY 6 cut(s) 96, 133, 231, 261, 309, 352
CviKI_1 RGCY 6 cut(s) 96, 133, 231, 261, 309, 352
DdeI CTNAG 1 cut(s) 241
DpnI GATC 3 cut(s) 53, 173, 267
DpnII GATC 3 cut(s) 51, 171, 265
EaeI YGGCCR 1 cut(s) 94
FaeI CATG 1 cut(s) 122
FaiI YATR 2 cut(s) 63, 120
FatI CATG 1 cut(s) 118
FauI CCCGC 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 79, 134
FokI GGATG 1 cut(s) 2
Fsp4HI GCNGC 2 cut(s) 79, 134
FspBI CTAG 1 cut(s) 235
GlaI GCGC 1 cut(s) 302
GluI GCNGC 2 cut(s) 79, 134
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 2 cut(s) 96, 352
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 303
Hin1II CATG 1 cut(s) 122
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HincII GTYRAC 2 cut(s) 42, 333
HindII GTYRAC 2 cut(s) 42, 333
HinfI GANTC 1 cut(s) 313
HpaII CCGG 1 cut(s) 72
Hpy166II GTNNAC 2 cut(s) 42, 333
Hpy188I TCNGA 1 cut(s) 220
Hpy8I GTNNAC 2 cut(s) 42, 333
HpyAV CCTTC 2 cut(s) 178, 336
HpyCH4V TGCA 3 cut(s) 102, 118, 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpyF3I CTNAG 1 cut(s) 241
Hsp92II CATG 1 cut(s) 122
HspAI GCGC 1 cut(s) 301
Kzo9I GATC 3 cut(s) 51, 171, 265
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 6 cut(s) 85, 139, 163, 222, 240, 305
Lsp1109I GCAGC 1 cut(s) 120
MaeI CTAG 1 cut(s) 235
MaeIII GTNAC 1 cut(s) 270
MalI GATC 3 cut(s) 53, 173, 267
MboI GATC 3 cut(s) 51, 171, 265
MboII GAAGA 1 cut(s) 233
MflI RGATCY 1 cut(s) 171
MlsI TGGCCA 1 cut(s) 96
MluNI TGGCCA 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 4 cut(s) 138, 161, 171, 251
Mox20I TGGCCA 1 cut(s) 96
MscI TGGCCA 1 cut(s) 96
MseI TTAA 1 cut(s) 109
Msp20I TGGCCA 1 cut(s) 96
MspI CCGG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 237
NdeII GATC 3 cut(s) 51, 171, 265
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 3 cut(s) 149, 158, 324
NspI RCATGY 1 cut(s) 122
NspV TTCGAA 1 cut(s) 203
PaeI GCATGC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 313
PkrI GCNGC 2 cut(s) 80, 135
PspN4I GGNNCC 3 cut(s) 149, 158, 324
PspPI GGNCC 1 cut(s) 350
PstI CTGCAG 1 cut(s) 179
PsuI RGATCY 1 cut(s) 171
SaqAI TTAA 1 cut(s) 109
SatI GCNGC 2 cut(s) 79, 134
Sau3AI GATC 3 cut(s) 51, 171, 265
Sau96I GGNCC 1 cut(s) 350
SetI ASST 7 cut(s) 135, 153, 182, 189, 233, 311, 328
SfcI CTRYAG 1 cut(s) 175
SfuI TTCGAA 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
SphI GCATGC 1 cut(s) 122
SsiI CCGC 2 cut(s) 69, 79
SspMI CTAG 1 cut(s) 235
TaqI TCGA 2 cut(s) 203, 311
TauI GCSGC 1 cut(s) 81
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 1 cut(s) 109
Tru9I TTAA 1 cut(s) 109
TseI GCWGC 1 cut(s) 133
TspDTI ATGAA 2 cut(s) 4, 276
TspGWI ACGGA 2 cut(s) 23, 27
XceI RCATGY 1 cut(s) 122
XspI CTAG 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.