Rroxscaffold_5G00384970

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0012007
Physical Location & Seq
Reverse (-)
64165742 .. 64169006
3265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00384970.1

Sequence Viewer

Length: 1134 bp
ATGTCATTTTCATGCTCAGACTGCTTCTCCGACCTACTCTGCGGCGAAGAATCCTCCGGAATCCTGTACGGAGGGTCGCCGGAATGCTCATCGGACATAGAATCTCCGGCGTGCAGCGAGGAATCCATCGCTGGATTCATCGAAGACGAACGCAAGTTCGTCCCCGGGTTTGACTACCTGGCTAGATTTCAATCTCGCTCCCTCGATATCTCCGCCAGAACCGATTCTGTTGCTTGGATTCTCAAGGTCCAAACCTACTACGGATTTCATCCACTAACGGCGTATCTCTCCGTCAACTACTTGGATCGGTTCTTATATTCCCGCCGGTTGCCGCAAGCAAATGGGTGGCCAATGCAACTTTTAAGTGTTGCATGCTTGTCATTAGCTGCCAAGATGGAGGAACCTCTGGTTCCTTCGTTGTTGGATCTGCAGGTTGAAGGTGCGAAGTTTATTTTCGAACCCAGAACAATCCGAAGAATGGAGCTTCTAGTGCTGAGTGTTTTGGACTGGAGGCTACGATCTGTAACACCATTCTGCTTCATCGCTTTCTTTGCGTTCAAGCTCGATTCAACTGGAACCTTCGTTGACTTTCTTATTCAACGGGCCACAGAAATCATTTTATCGAATATCCAAGAGGCTAGCTTTCTTGAATACTGGCCATCATGCATTGCTGCAGCAGCAATACTTTCTGCGGCCAATGAAATCCCGAATCTGTCCCTTGAAAATCCGGAGCATGCTGAATCATGGTGTGATGGACTAAGCAAAGAGAAGATAATCGGCTGCTACAGATTAATGCAAGAACTGGTGCTGCAGAATAATCGGAAAAATAAGTCGCCTACTATTGTGTTACCACAGCTTCGAGTTACAGTTCGGGCCAGAATGAGGTCAAGTACTCCTACTACTACTACTACTGACTCATCCTCGTCCTTCTCATTATCACCATCCTCCTCGTCATCACCATTAACATCGTCGTATAAGAAGCGAAAATTAAATAACTGCTTGTGGGTAGACGATGACAAAGAAGCTCCGAGTAAGGGAAGATATCAAAGTAAACTAATAAAGGAGAAAAGAAAAGAAAATGGTGGTCCAGGAAAACCTCGATATTTTTTTGGAGGGTTTTTGGGATTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

377

Amino Acids

42.27

Weight (kDa)

6.76

Isoelectric Point (pI)

61.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 45 - 173 2.6e-28 Cyclin, N-terminal domain
Cyclin_C PF02984 175 - 276 2.5e-13 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70210
fragaria_vesca FvH4_4g34970
malus_domestica MD13G1087200.v1.1 MD16G1087700.v1.1
prunus_persica Prupe.1G259100_v2.0.a1 Prupe.1G259100_v2.0.a1
pyrus_communis pycom13g07520 pycom16g07520
rosa_chinensis RchiOBHm_Chr4g0444481
rosa_laevigata RLG00000005830
rosa_multiflora Rmu_co8344649.1_g000001
rosa_roxburghii Rroxscaffold_5G00384970
rosa_rugosa Rorug04G0353100 Rorug04G0353100
rosa_samantha Rh4AG413300 Rh4BG424800 Rh4CG439400 Rh4DG420300
rosa_wichuraiana Rw4G035500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 421
AccI GTMKAC 1 cut(s) 1008
AccIII TCCGGA 2 cut(s) 56, 727
AciI CCGC 5 cut(s) 42, 213, 322, 332, 692
AclWI GGATC 2 cut(s) 312, 432
AcoI YGGCCR 3 cut(s) 347, 656, 693
AfaI GTAC 2 cut(s) 68, 892
AfiI CCNNNNNNNGG 3 cut(s) 478, 882, 1034
AgsI TTSAA 8 cut(s) 191, 437, 559, 570, 599, 650, 722, 1129
AjnI CCWGG 2 cut(s) 177, 1087
AluBI AGCT 6 cut(s) 386, 484, 562, 642, 856, 1025
AluI AGCT 6 cut(s) 386, 484, 562, 642, 856, 1025
AlwI GGATC 2 cut(s) 312, 432
Ama87I CYCGRG 1 cut(s) 164
Aor13HI TCCGGA 2 cut(s) 56, 727
AoxI GGCC 5 cut(s) 347, 603, 656, 693, 873
ApeKI GCWGC 7 cut(s) 114, 386, 671, 674, 677, 780, 808
AseI ATTAAT 1 cut(s) 791
Asp700I GAANNNNTTC 1 cut(s) 223
AspS9I GGNCC 4 cut(s) 247, 603, 873, 1085
AsuC2I CCSGG 2 cut(s) 165, 166
AsuHPI GGTGA 2 cut(s) 930, 948
AsuII TTCGAA 1 cut(s) 456
AsuNHI GCTAGC 1 cut(s) 638
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 2 cut(s) 247, 1085
BalI TGGCCA 2 cut(s) 349, 658
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 7 cut(s) 126, 373, 658, 686, 689, 767, 795
BccI CCATC 5 cut(s) 134, 388, 667, 746, 949
BceAI ACGGC 1 cut(s) 294
BcgI CGANNNNNNTGC 4 cut(s) 212, 246, 800, 834
BciT130I CCWGG 2 cut(s) 179, 1089
BcnI CCSGG 2 cut(s) 165, 166
BfaI CTAG 3 cut(s) 183, 488, 639
BfmI CTRYAG 4 cut(s) 428, 672, 784, 809
BfuAI ACCTGC 1 cut(s) 421
BmcAI AGTACT 1 cut(s) 892
Bme1390I CCNGG 4 cut(s) 165, 166, 179, 1089
Bme18I GGWCC 2 cut(s) 247, 1085
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 4 cut(s) 247, 603, 873, 1085
BmiI GGNNCC 3 cut(s) 402, 411, 577
BmrFI CCNGG 4 cut(s) 165, 166, 179, 1089
BmtI GCTAGC 1 cut(s) 642
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 529
Bpu14I TTCGAA 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 2 cut(s) 165, 166
BsaBI GATNNNNATC 1 cut(s) 190
BsaJI CCNNGG 2 cut(s) 163, 164
BsaWI WCCGGW 2 cut(s) 56, 727
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 3 cut(s) 478, 882, 1034
Bse118I RCCGGY 1 cut(s) 324
Bse1I ACTGG 4 cut(s) 512, 577, 659, 807
Bse3DI GCAATG 1 cut(s) 666
Bse8I GATNNNNATC 1 cut(s) 190
BseAI TCCGGA 2 cut(s) 56, 727
BseBI CCWGG 2 cut(s) 179, 1089
BseDI CCNNGG 2 cut(s) 163, 164
BseGI GGATG 3 cut(s) 268, 917, 941
BseJI GATNNNNATC 1 cut(s) 190
BseLI CCNNNNNNNGG 3 cut(s) 478, 882, 1034
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 2 cut(s) 30, 485
BseNI ACTGG 4 cut(s) 512, 577, 659, 807
BseRI GAGGAG 1 cut(s) 937
BseXI GCAGC 7 cut(s) 126, 373, 658, 686, 689, 767, 795
BsgI GTGCAG 1 cut(s) 133
BshFI GGCC 5 cut(s) 349, 605, 658, 695, 875
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 6 cut(s) 57, 80, 107, 165, 325, 728
BslFI GGGAC 2 cut(s) 146, 700
BslI CCNNNNNNNGG 3 cut(s) 478, 882, 1034
BsmFI GGGAC 2 cut(s) 146, 700
BsmI GAATGC 1 cut(s) 89
BsnI GGCC 5 cut(s) 349, 605, 658, 695, 875
BsoBI CYCGRG 1 cut(s) 164
Bsp119I TTCGAA 1 cut(s) 456
Bsp13I TCCGGA 2 cut(s) 56, 727
Bsp143I GATC 3 cut(s) 304, 424, 518
BspACI CCGC 5 cut(s) 42, 213, 322, 332, 692
BspANI GGCC 5 cut(s) 349, 605, 658, 695, 875
BspCNI CTCAG 2 cut(s) 29, 486
BspEI TCCGGA 2 cut(s) 56, 727
BspLI GGNNCC 3 cut(s) 402, 411, 577
BspMAI CTGCAG 3 cut(s) 432, 676, 813
BspMI ACCTGC 1 cut(s) 421
BspOI GCTAGC 1 cut(s) 642
BspPI GGATC 2 cut(s) 312, 432
BspT104I TTCGAA 1 cut(s) 456
BsrDI GCAATG 1 cut(s) 666
BsrFI RCCGGY 1 cut(s) 324
BsrI ACTGG 4 cut(s) 512, 577, 659, 807
BssAI RCCGGY 1 cut(s) 324
BssECI CCNNGG 2 cut(s) 163, 164
BssMI GATC 3 cut(s) 304, 424, 518
Bst2UI CCWGG 2 cut(s) 179, 1089
Bst4CI ACNGT 1 cut(s) 868
BstBI TTCGAA 1 cut(s) 456
BstC8I GCNNGC 5 cut(s) 112, 336, 373, 640, 735
BstDEI CTNAG 3 cut(s) 16, 494, 758
BstF5I GGATG 3 cut(s) 268, 917, 941
BstKTI GATC 3 cut(s) 307, 427, 521
BstMBI GATC 3 cut(s) 304, 424, 518
BstMWI GCNNNNNNNGC 4 cut(s) 21, 490, 551, 677
BstNI CCWGG 2 cut(s) 179, 1089
BstNSI RCATGY 2 cut(s) 375, 737
BstSCI CCNGG 4 cut(s) 163, 164, 177, 1087
BstSFI CTRYAG 4 cut(s) 428, 672, 784, 809
BstV1I GCAGC 7 cut(s) 126, 373, 658, 686, 689, 767, 795
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BsuRI GGCC 5 cut(s) 349, 605, 658, 695, 875
BtgZI GCGATG 2 cut(s) 112, 526
BtsCI GGATG 3 cut(s) 268, 917, 941
BveI ACCTGC 1 cut(s) 421
Cac8I GCNNGC 5 cut(s) 112, 336, 373, 640, 735
Cfr10I RCCGGY 1 cut(s) 324
Cfr13I GGNCC 4 cut(s) 247, 603, 873, 1085
Cfr9I CCCGGG 1 cut(s) 164
Csp6I GTAC 2 cut(s) 67, 891
CviAII CATG 5 cut(s) 12, 372, 663, 734, 744
CviQI GTAC 2 cut(s) 67, 891
DdeI CTNAG 3 cut(s) 16, 494, 758
DpnI GATC 3 cut(s) 306, 426, 520
DpnII GATC 3 cut(s) 304, 424, 518
EaeI YGGCCR 3 cut(s) 347, 656, 693
EciI GGCGGA 1 cut(s) 202
Eco32I GATATC 2 cut(s) 208, 1043
Eco47I GGWCC 2 cut(s) 247, 1085
Eco88I CYCGRG 1 cut(s) 164
EcoRII CCWGG 2 cut(s) 177, 1087
EcoRV GATATC 2 cut(s) 208, 1043
EcoT22I ATGCAT 1 cut(s) 668
FaeI CATG 5 cut(s) 15, 375, 666, 737, 747
FaiI YATR 8 cut(s) 13, 98, 316, 373, 664, 735, 745, 975
FaqI GGGAC 2 cut(s) 146, 700
FatI CATG 5 cut(s) 11, 371, 662, 733, 743
FauI CCCGC 1 cut(s) 329
FblI GTMKAC 1 cut(s) 1008
FokI GGATG 3 cut(s) 255, 904, 928
FspBI CTAG 3 cut(s) 183, 488, 639
GsuI CTGGAG 1 cut(s) 529
HaeIII GGCC 5 cut(s) 349, 605, 658, 695, 875
HapII CCGG 6 cut(s) 57, 80, 107, 165, 325, 728
Hin1II CATG 5 cut(s) 15, 375, 666, 737, 747
HincII GTYRAC 2 cut(s) 295, 586
HindII GTYRAC 2 cut(s) 295, 586
HpaII CCGG 6 cut(s) 57, 80, 107, 165, 325, 728
HphI GGTGA 2 cut(s) 930, 948
Hpy166II GTNNAC 4 cut(s) 295, 586, 1009, 1052
Hpy188I TCNGA 6 cut(s) 19, 31, 94, 473, 822, 1029
Hpy188III TCNNGA 4 cut(s) 57, 647, 706, 728
Hpy8I GTNNAC 4 cut(s) 295, 586, 1009, 1052
Hpy99I CGWCG 1 cut(s) 973
HpyAV CCTTC 4 cut(s) 423, 431, 589, 937
HpyCH4III ACNGT 1 cut(s) 868
HpyCH4V TGCA 8 cut(s) 114, 355, 371, 430, 666, 674, 796, 811
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 490, 551, 677
HpyF3I CTNAG 3 cut(s) 16, 494, 758
Hsp92II CATG 5 cut(s) 15, 375, 666, 737, 747
Kpn2I TCCGGA 2 cut(s) 56, 727
Kzo9I GATC 3 cut(s) 304, 424, 518
LmnI GCTCC 4 cut(s) 203, 481, 730, 1030
Lsp1109I GCAGC 7 cut(s) 126, 373, 658, 686, 689, 767, 795
MaeI CTAG 3 cut(s) 183, 488, 639
MaeIII GTNAC 3 cut(s) 523, 846, 862
MalI GATC 3 cut(s) 306, 426, 520
MboI GATC 3 cut(s) 304, 424, 518
MboII GAAGA 5 cut(s) 59, 155, 486, 781, 1050
MflI RGATCY 1 cut(s) 424
MlsI TGGCCA 2 cut(s) 349, 658
MluCI AATT 2 cut(s) 986, 1129
MluNI TGGCCA 2 cut(s) 349, 658
MlyI GAGTC 1 cut(s) 908
MmeI TCCRAC 2 cut(s) 54, 402
Mox20I TGGCCA 2 cut(s) 349, 658
Mph1103I ATGCAT 1 cut(s) 668
MroI TCCGGA 2 cut(s) 56, 727
MroXI GAANNNNTTC 1 cut(s) 223
MscI TGGCCA 2 cut(s) 349, 658
MseI TTAA 4 cut(s) 362, 791, 962, 989
MslI CAYNNNNRTG 1 cut(s) 10
Msp20I TGGCCA 2 cut(s) 349, 658
MspI CCGG 6 cut(s) 57, 80, 107, 165, 325, 728
MspR9I CCNGG 4 cut(s) 165, 166, 179, 1089
Mva1269I GAATGC 1 cut(s) 89
MvaI CCWGG 2 cut(s) 179, 1089
MwoI GCNNNNNNNGC 4 cut(s) 21, 490, 551, 677
NciI CCSGG 2 cut(s) 165, 166
NdeII GATC 3 cut(s) 304, 424, 518
NheI GCTAGC 1 cut(s) 638
NlaIII CATG 5 cut(s) 15, 375, 666, 737, 747
NlaIV GGNNCC 3 cut(s) 402, 411, 577
NsiI ATGCAT 1 cut(s) 668
NspI RCATGY 2 cut(s) 375, 737
NspV TTCGAA 1 cut(s) 456
PaeI GCATGC 2 cut(s) 375, 737
PctI GAATGC 1 cut(s) 89
PdmI GAANNNNTTC 1 cut(s) 223
PfoI TCCNGGA 1 cut(s) 1087
PleI GAGTC 1 cut(s) 908
PpsI GAGTC 1 cut(s) 908
PshBI ATTAAT 1 cut(s) 791
Psp6I CCWGG 2 cut(s) 177, 1087
PspGI CCWGG 2 cut(s) 177, 1087
PspN4I GGNNCC 3 cut(s) 402, 411, 577
PspPI GGNCC 4 cut(s) 247, 603, 873, 1085
PstI CTGCAG 3 cut(s) 432, 676, 813
PsuI RGATCY 1 cut(s) 424
RsaI GTAC 2 cut(s) 68, 892
RsaNI GTAC 2 cut(s) 67, 891
RseI CAYNNNNRTG 1 cut(s) 10
SaqAI TTAA 4 cut(s) 362, 791, 962, 989
Sau3AI GATC 3 cut(s) 304, 424, 518
Sau96I GGNCC 4 cut(s) 247, 603, 873, 1085
ScaI AGTACT 1 cut(s) 892
SchI GAGTC 1 cut(s) 908
ScrFI CCNGG 4 cut(s) 165, 166, 179, 1089
SfcI CTRYAG 4 cut(s) 428, 672, 784, 809
SfuI TTCGAA 1 cut(s) 456
SinI GGWCC 2 cut(s) 247, 1085
SmaI CCCGGG 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SphI GCATGC 2 cut(s) 375, 737
Sse9I AATT 2 cut(s) 986, 1129
SsiI CCGC 5 cut(s) 42, 213, 322, 332, 692
SspMI CTAG 3 cut(s) 183, 488, 639
StyD4I CCNGG 4 cut(s) 163, 164, 177, 1087
TaaI ACNGT 1 cut(s) 868
TaqI TCGA 7 cut(s) 141, 204, 456, 564, 623, 859, 1099
TasI AATT 2 cut(s) 986, 1129
TatI WGTACW 1 cut(s) 890
TauI GCSGC 3 cut(s) 45, 334, 695
Tru1I TTAA 4 cut(s) 362, 791, 962, 989
Tru9I TTAA 4 cut(s) 362, 791, 962, 989
TseI GCWGC 7 cut(s) 114, 386, 671, 674, 677, 780, 808
TspDTI ATGAA 4 cut(s) 127, 257, 529, 714
TspGWI ACGGA 3 cut(s) 84, 276, 280
TspMI CCCGGG 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 247, 1085
VspI ATTAAT 1 cut(s) 791
XceI RCATGY 2 cut(s) 375, 737
XmaI CCCGGG 1 cut(s) 164
XmiI GTMKAC 1 cut(s) 1008
XmnI GAANNNNTTC 1 cut(s) 223
XspI CTAG 3 cut(s) 183, 488, 639
ZrmI AGTACT 1 cut(s) 892
Zsp2I ATGCAT 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.