FvH4_4g34970

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012007
Physical Location & Seq
Reverse (-)
32467905 .. 32471326
3422 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34970.t1

Sequence Viewer

Length: 1038 bp
ATGTCACTTTCATGCTCAGACTGCTTATCCGACCTACTCTGCGGCGAGGACTCCTCCGAAATCCTGTCCGGAGAGTCGCCGGAATGCTCGTCCGACATAGAATCTCCGGCGTGTAGCGAGGAATCCATCGCCGGATTCATCGAAGACGAACGCAAGTTCGTCCCCGGGGTTGATTACCTGGCTAGATTTCAGTCTCACTCCCTCGACATCTCCGCTAGAACCGATTCCGTTGCATGGATTCTCAAGGTCCAAACCTACTATGGATTTCATCCACTAACGGCGTATCTATCCGTCAACTACTTGGATCGGTTCTTATGTTCCCGCCGGTTGCCGCAAGCAAATGGGTGGCCAATGCAACTTTTAAGTGTTGCATGCTTGTCGTTAGCTGCAAAGATGGAGGAACCTCTCGTTCCTTCGTTGTTGGATCTGCAGGTTGAAGGTGCGAAGTTTATTTTCGAACCCAGAACAATTCGCAGAATGGAGCTTCTAGTGCTAAGTGTATTGGATTGGAGGCTACGATCTGTGACACCATTCTGCTTCATCGCTTTCTTTGCGTTCAAGCTCGACTCAACTGGAACCTTCGTTGGCTTTCTCATTCAACGGGCTACAGAAATCATTTTATCGAATATCCAAGAGGCTAGCTTTCTTGAATACTGGCCATCCTGCATTGCTGCTGCAGCAATACTTTCTGCGGCCAATGAAATCCCGAATCTGTCCCTAGAAAATCCGGAGCTTGCTGAATCATGGTGTGATGGACTGAGCAAAGATAAAATAATCGGCTGCTACCGATTAATGCAAGATCTGGTGCTGCAGAATGATCGAAAAATGAAGTCGCCTACTATTGTGTTACCACAGCTTCGAGTTACAGTTCGAGCCAGAATGATGAGGTCACGTACTCCTACTACTCCAACTACTGACTCATCCTCGTCGTTCTCAGTATCATCGTCCTCCTCGTCATCACCATTATCATCGTCTTATAAGAAGCGGAAAATAAACAAGTGCTTGTGGGTAGATGATGACAAAGGAAGCTCCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

346

Amino Acids

38.44

Weight (kDa)

5.08

Isoelectric Point (pI)

65.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 45 - 173 5.1e-29 Cyclin, N-terminal domain
Cyclin_C PF02984 175 - 274 3.2e-12 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70210
fragaria_vesca FvH4_4g34970
malus_domestica MD13G1087200.v1.1 MD16G1087700.v1.1
prunus_persica Prupe.1G259100_v2.0.a1 Prupe.1G259100_v2.0.a1
pyrus_communis pycom13g07520 pycom16g07520
rosa_chinensis RchiOBHm_Chr4g0444481
rosa_laevigata RLG00000005830
rosa_multiflora Rmu_co8344649.1_g000001
rosa_roxburghii Rroxscaffold_5G00384970
rosa_rugosa Rorug04G0353100 Rorug04G0353100
rosa_samantha Rh4AG413300 Rh4BG424800 Rh4CG439400 Rh4DG420300
rosa_wichuraiana Rw4G035500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 978
Acc36I ACCTGC 1 cut(s) 421
AccIII TCCGGA 2 cut(s) 68, 727
AciI CCGC 6 cut(s) 42, 213, 322, 332, 692, 985
AclWI GGATC 2 cut(s) 312, 432
AcoI YGGCCR 3 cut(s) 347, 656, 693
AfaI GTAC 1 cut(s) 895
AfiI CCNNNNNNNGG 1 cut(s) 234
AgsI TTSAA 4 cut(s) 437, 559, 599, 650
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 7 cut(s) 386, 484, 562, 642, 733, 856, 1029
AluI AGCT 7 cut(s) 386, 484, 562, 642, 733, 856, 1029
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 2 cut(s) 312, 432
Ama87I CYCGRG 1 cut(s) 164
Aor13HI TCCGGA 2 cut(s) 68, 727
AoxI GGCC 3 cut(s) 347, 656, 693
ApeKI GCWGC 6 cut(s) 386, 671, 674, 677, 780, 808
AseI ATTAAT 1 cut(s) 791
Asp700I GAANNNNTTC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 247
AsuC2I CCSGG 2 cut(s) 165, 166
AsuHPI GGTGA 1 cut(s) 951
AsuII TTCGAA 1 cut(s) 456
AsuNHI GCTAGC 1 cut(s) 638
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 1 cut(s) 247
BalI TGGCCA 2 cut(s) 349, 658
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 6 cut(s) 373, 658, 661, 689, 767, 795
BccI CCATC 4 cut(s) 134, 388, 667, 746
BceAI ACGGC 1 cut(s) 294
BcgI CGANNNNNNTGC 6 cut(s) 212, 246, 360, 394, 800, 834
BciT130I CCWGG 1 cut(s) 179
BcnI CCSGG 2 cut(s) 165, 166
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 5 cut(s) 183, 216, 488, 639, 719
BfmI CTRYAG 4 cut(s) 428, 606, 675, 809
BfuAI ACCTGC 1 cut(s) 421
BglII AGATCT 1 cut(s) 799
BisI GCNGC 9 cut(s) 43, 332, 387, 672, 675, 678, 693, 781, 809
BlsI GCNGC 9 cut(s) 44, 333, 388, 673, 676, 679, 694, 782, 810
Bme1390I CCNGG 3 cut(s) 165, 166, 179
Bme18I GGWCC 1 cut(s) 247
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 2 cut(s) 402, 577
BmrFI CCNGG 3 cut(s) 165, 166, 179
BmtI GCTAGC 1 cut(s) 642
BpiI GAAGAC 1 cut(s) 150
BplI GAGNNNNNCTC 2 cut(s) 38, 70
Bpu14I TTCGAA 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 2 cut(s) 165, 166
BsaAI YACGTR 1 cut(s) 893
BsaJI CCNNGG 3 cut(s) 163, 164, 165
BsaWI WCCGGW 2 cut(s) 68, 727
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse118I RCCGGY 1 cut(s) 324
Bse1I ACTGG 2 cut(s) 577, 659
Bse3DI GCAATG 1 cut(s) 666
BseAI TCCGGA 2 cut(s) 68, 727
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 3 cut(s) 163, 164, 165
BseGI GGATG 3 cut(s) 268, 659, 920
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 3 cut(s) 30, 749, 948
BseNI ACTGG 2 cut(s) 577, 659
BseRI GAGGAG 2 cut(s) 43, 940
BseXI GCAGC 6 cut(s) 373, 658, 661, 689, 767, 795
BshFI GGCC 3 cut(s) 349, 658, 695
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 7 cut(s) 69, 80, 107, 132, 165, 325, 728
BslFI GGGAC 2 cut(s) 146, 700
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 2 cut(s) 146, 700
BsmI GAATGC 1 cut(s) 89
BsnI GGCC 3 cut(s) 349, 658, 695
BsoBI CYCGRG 1 cut(s) 164
Bsp119I TTCGAA 1 cut(s) 456
Bsp13I TCCGGA 2 cut(s) 68, 727
Bsp143I GATC 5 cut(s) 304, 424, 518, 799, 817
BspACI CCGC 6 cut(s) 42, 213, 322, 332, 692, 985
BspANI GGCC 3 cut(s) 349, 658, 695
BspCNI CTCAG 3 cut(s) 29, 750, 947
BspEI TCCGGA 2 cut(s) 68, 727
BspLI GGNNCC 2 cut(s) 402, 577
BspMAI CTGCAG 3 cut(s) 432, 679, 813
BspMI ACCTGC 1 cut(s) 421
BspOI GCTAGC 1 cut(s) 642
BspPI GGATC 2 cut(s) 312, 432
BspT104I TTCGAA 1 cut(s) 456
BsrDI GCAATG 1 cut(s) 666
BsrFI RCCGGY 1 cut(s) 324
BsrI ACTGG 2 cut(s) 577, 659
BssAI RCCGGY 1 cut(s) 324
BssECI CCNNGG 3 cut(s) 163, 164, 165
BssMI GATC 5 cut(s) 304, 424, 518, 799, 817
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 868
BstBAI YACGTR 1 cut(s) 893
BstBI TTCGAA 1 cut(s) 456
BstC8I GCNNGC 4 cut(s) 336, 373, 640, 735
BstDEI CTNAG 4 cut(s) 16, 494, 758, 934
BstF5I GGATG 3 cut(s) 268, 659, 920
BstKTI GATC 5 cut(s) 307, 427, 521, 802, 820
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 5 cut(s) 304, 424, 518, 799, 817
BstMWI GCNNNNNNNGC 4 cut(s) 21, 490, 551, 677
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 3 cut(s) 163, 164, 177
BstSFI CTRYAG 4 cut(s) 428, 606, 675, 809
BstV1I GCAGC 6 cut(s) 373, 658, 661, 689, 767, 795
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 2 cut(s) 424, 799
BstYI RGATCY 2 cut(s) 424, 799
BsuRI GGCC 3 cut(s) 349, 658, 695
BtgZI GCGATG 2 cut(s) 112, 526
BtsCI GGATG 3 cut(s) 268, 659, 920
BveI ACCTGC 1 cut(s) 421
Cac8I GCNNGC 4 cut(s) 336, 373, 640, 735
Cfr10I RCCGGY 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 247
Cfr9I CCCGGG 1 cut(s) 164
Csp6I GTAC 1 cut(s) 894
CviAII CATG 4 cut(s) 12, 234, 372, 744
CviQI GTAC 1 cut(s) 894
DdeI CTNAG 4 cut(s) 16, 494, 758, 934
DpnI GATC 5 cut(s) 306, 426, 520, 801, 819
DpnII GATC 5 cut(s) 304, 424, 518, 799, 817
EaeI YGGCCR 3 cut(s) 347, 656, 693
Eco47I GGWCC 1 cut(s) 247
Eco88I CYCGRG 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 177
FaeI CATG 4 cut(s) 15, 237, 375, 747
FaiI YATR 8 cut(s) 13, 98, 235, 261, 316, 373, 745, 978
FaqI GGGAC 2 cut(s) 146, 700
FatI CATG 4 cut(s) 11, 233, 371, 743
FauI CCCGC 1 cut(s) 329
Fnu4HI GCNGC 9 cut(s) 43, 332, 387, 672, 675, 678, 693, 781, 809
FokI GGATG 3 cut(s) 255, 646, 907
Fsp4HI GCNGC 9 cut(s) 43, 332, 387, 672, 675, 678, 693, 781, 809
FspBI CTAG 5 cut(s) 183, 216, 488, 639, 719
GluI GCNGC 9 cut(s) 43, 332, 387, 672, 675, 678, 693, 781, 809
HaeIII GGCC 3 cut(s) 349, 658, 695
HapII CCGG 7 cut(s) 69, 80, 107, 132, 165, 325, 728
Hin1II CATG 4 cut(s) 15, 237, 375, 747
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HpaII CCGG 7 cut(s) 69, 80, 107, 132, 165, 325, 728
HphI GGTGA 1 cut(s) 951
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 5 cut(s) 19, 31, 58, 94, 1033
Hpy188III TCNNGA 4 cut(s) 69, 647, 706, 728
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 1 cut(s) 931
HpyAV CCTTC 3 cut(s) 423, 431, 589
HpyCH4III ACNGT 1 cut(s) 868
HpyCH4IV ACGT 1 cut(s) 892
HpyCH4V TGCA 9 cut(s) 233, 355, 371, 389, 430, 666, 677, 796, 811
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 490, 551, 677
HpyF3I CTNAG 4 cut(s) 16, 494, 758, 934
HpySE526I ACGT 1 cut(s) 892
Hsp92II CATG 4 cut(s) 15, 237, 375, 747
Kpn2I TCCGGA 2 cut(s) 68, 727
Kzo9I GATC 5 cut(s) 304, 424, 518, 799, 817
LmnI GCTCC 3 cut(s) 481, 730, 1034
Lsp1109I GCAGC 6 cut(s) 373, 658, 661, 689, 767, 795
MaeI CTAG 5 cut(s) 183, 216, 488, 639, 719
MaeII ACGT 1 cut(s) 892
MaeIII GTNAC 5 cut(s) 3, 523, 846, 862, 888
MalI GATC 5 cut(s) 306, 426, 520, 801, 819
MboI GATC 5 cut(s) 304, 424, 518, 799, 817
MboII GAAGA 1 cut(s) 155
MflI RGATCY 2 cut(s) 424, 799
MlsI TGGCCA 2 cut(s) 349, 658
MluCI AATT 1 cut(s) 468
MluNI TGGCCA 2 cut(s) 349, 658
MlyI GAGTC 4 cut(s) 44, 83, 560, 911
MmeI TCCRAC 4 cut(s) 54, 117, 402, 932
Mox20I TGGCCA 2 cut(s) 349, 658
MroI TCCGGA 2 cut(s) 68, 727
MroXI GAANNNNTTC 1 cut(s) 223
MscI TGGCCA 2 cut(s) 349, 658
MseI TTAA 2 cut(s) 362, 791
MslI CAYNNNNRTG 1 cut(s) 10
Msp20I TGGCCA 2 cut(s) 349, 658
MspI CCGG 7 cut(s) 69, 80, 107, 132, 165, 325, 728
MspR9I CCNGG 3 cut(s) 165, 166, 179
Mva1269I GAATGC 1 cut(s) 89
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 4 cut(s) 21, 490, 551, 677
NciI CCSGG 2 cut(s) 165, 166
NdeII GATC 5 cut(s) 304, 424, 518, 799, 817
NheI GCTAGC 1 cut(s) 638
NlaIII CATG 4 cut(s) 15, 237, 375, 747
NlaIV GGNNCC 2 cut(s) 402, 577
NmuCI GTSAC 3 cut(s) 3, 523, 888
NspI RCATGY 1 cut(s) 375
NspV TTCGAA 1 cut(s) 456
PaeI GCATGC 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 950
PctI GAATGC 1 cut(s) 89
PdmI GAANNNNTTC 1 cut(s) 223
PfeI GAWTC 7 cut(s) 101, 122, 135, 224, 238, 709, 740
PkrI GCNGC 9 cut(s) 44, 333, 388, 673, 676, 679, 694, 782, 810
PleI GAGTC 4 cut(s) 44, 82, 560, 911
PpsI GAGTC 4 cut(s) 44, 82, 560, 911
Ppu21I YACGTR 1 cut(s) 893
PshBI ATTAAT 1 cut(s) 791
PsiI TTATAA 1 cut(s) 978
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 402, 577
PspPI GGNCC 1 cut(s) 247
PstI CTGCAG 3 cut(s) 432, 679, 813
PsuI RGATCY 2 cut(s) 424, 799
RsaI GTAC 1 cut(s) 895
RsaNI GTAC 1 cut(s) 894
RseI CAYNNNNRTG 1 cut(s) 10
SaqAI TTAA 2 cut(s) 362, 791
SatI GCNGC 9 cut(s) 43, 332, 387, 672, 675, 678, 693, 781, 809
Sau3AI GATC 5 cut(s) 304, 424, 518, 799, 817
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 4 cut(s) 44, 83, 560, 911
ScrFI CCNGG 3 cut(s) 165, 166, 179
SfcI CTRYAG 4 cut(s) 428, 606, 675, 809
SfuI TTCGAA 1 cut(s) 456
SinI GGWCC 1 cut(s) 247
SmaI CCCGGG 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SphI GCATGC 1 cut(s) 375
Sse9I AATT 1 cut(s) 468
SsiI CCGC 6 cut(s) 42, 213, 322, 332, 692, 985
SspMI CTAG 5 cut(s) 183, 216, 488, 639, 719
StyD4I CCNGG 3 cut(s) 163, 164, 177
TaaI ACNGT 1 cut(s) 868
TaiI ACGT 1 cut(s) 895
TaqI TCGA 8 cut(s) 141, 204, 456, 564, 623, 820, 859, 871
TasI AATT 1 cut(s) 468
TauI GCSGC 3 cut(s) 45, 334, 695
TfiI GAWTC 7 cut(s) 101, 122, 135, 224, 238, 709, 740
Tru1I TTAA 2 cut(s) 362, 791
Tru9I TTAA 2 cut(s) 362, 791
TseFI GTSAC 3 cut(s) 3, 523, 888
TseI GCWGC 6 cut(s) 386, 671, 674, 677, 780, 808
Tsp45I GTSAC 3 cut(s) 3, 523, 888
TspDTI ATGAA 5 cut(s) 127, 257, 529, 714, 842
TspGWI ACGGA 2 cut(s) 217, 280
TspMI CCCGGG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 247
VspI ATTAAT 1 cut(s) 791
XceI RCATGY 1 cut(s) 375
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XmaI CCCGGG 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 223
XspI CTAG 5 cut(s) 183, 216, 488, 639, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.