RchiOBHm_Chr4g0444481

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0012007
Physical Location & Seq
Reverse (-)
65211928 .. 65215074
3147 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41213

Sequence Viewer

Length: 1038 bp
ATGTCACTTTCATGCTCAGACTGCTTCTCCGACCTACTCTGCGGAGAGGACTCCTCCGAAATCCTGTCCGGAGAGTCGCCGGAATGCTCGTCGGACATAGAATCTCCGGCGTGCAGCGAGGAATCCATCGCCGGATTCATCGAAGACGAACGCAAGTTCGTCCCCGGGTTTGACTACTTGGCTAGATTTCAGTCTCACTCCCTCGATATCTCCGCCAGAACCGATTCCGTTGCATGGATTCTCAAGGTCCAAACCTACTACGGATTTCATCCACTAACGGCGTATCTCTCCGTCAACTACTTGGATCGGTTCTTATATTCCCGCCGGTTGCCGCAAGCAAATGGGTGGCCAATGCAACTTTTAAGTGTTGCATGCTTGTCTTTAGCTGCCAAGATGGAGGAACCTCTGGTTCCCTCGTTGTTGGATCTGCAGGTTGAAGGTGCGAAGTTAATTTTCGAACCCAGAACAATCCGAAGAATGGAGCTTCTAGTGCTGAGTGTTTTGGACTGGAGGCTACGATCTGTAACACCATTCTGCTTCATCGCTTTCTTTGCGTTCAAGCTCGATTCAACTGGAACCTTCGTTGACTTTCTTATTCAACGGGCCACGGAAATCATTTTAGCGAATATCCAAGAGGCTAGCTTTCTTGAATACTGGCCATCATGCATTGCTGCAGCCGCAATACTTTCTGCGGCCAATGAAATCCCGAATCTGTCCCTTGAAAATCCGGAGCATGCTGAATCATGGTGTGATGGACTAAGCAAAGAGAAGATAATCGGCTGCTACAGATTAATGCAAGAACTGGTGATGCAGAATAATCGGAAAAATAAGTCGCCTACTATAGTGTTACCACAGCTTCGAGTTACAGTTCGGGCCAGAATGAGGTCAAGTACTCCTACTACTCCTACTACTACTGACTCATCCTCGTCCTTCTCATTATCATCATCCTCCTCGTCATCACCATTATCATTGTCGTATAAGAAGCGGAAATTAAATAACTGCTTGTGGGTAGATGATGACAAAGGAAGCTCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

345

Amino Acids

38.57

Weight (kDa)

5.01

Isoelectric Point (pI)

62.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 45 - 173 2.2e-28 Cyclin, N-terminal domain
Cyclin_C PF02984 175 - 276 5.8e-13 Cyclin, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70210
fragaria_vesca FvH4_4g34970
malus_domestica MD13G1087200.v1.1 MD16G1087700.v1.1
prunus_persica Prupe.1G259100_v2.0.a1 Prupe.1G259100_v2.0.a1
pyrus_communis pycom13g07520 pycom16g07520
rosa_chinensis RchiOBHm_Chr4g0444481
rosa_laevigata RLG00000005830
rosa_multiflora Rmu_co8344649.1_g000001
rosa_roxburghii Rroxscaffold_5G00384970
rosa_rugosa Rorug04G0353100 Rorug04G0353100
rosa_samantha Rh4AG413300 Rh4BG424800 Rh4CG439400 Rh4DG420300
rosa_wichuraiana Rw4G035500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 421
AccIII TCCGGA 2 cut(s) 68, 727
AciI CCGC 7 cut(s) 42, 213, 322, 332, 678, 692, 985
AclWI GGATC 2 cut(s) 312, 432
AcoI YGGCCR 3 cut(s) 347, 656, 693
AfaI GTAC 1 cut(s) 892
AfiI CCNNNNNNNGG 3 cut(s) 234, 478, 882
AgsI TTSAA 6 cut(s) 437, 559, 570, 599, 650, 722
AluBI AGCT 6 cut(s) 386, 484, 562, 642, 856, 1029
AluI AGCT 6 cut(s) 386, 484, 562, 642, 856, 1029
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 2 cut(s) 312, 432
Ama87I CYCGRG 1 cut(s) 164
Aor13HI TCCGGA 2 cut(s) 68, 727
AoxI GGCC 5 cut(s) 347, 603, 656, 693, 873
ApeKI GCWGC 5 cut(s) 114, 386, 671, 674, 780
AseI ATTAAT 1 cut(s) 791
Asp700I GAANNNNTTC 1 cut(s) 223
AspS9I GGNCC 3 cut(s) 247, 603, 873
AsuC2I CCSGG 2 cut(s) 165, 166
AsuHPI GGTGA 2 cut(s) 817, 951
AsuII TTCGAA 1 cut(s) 456
AsuNHI GCTAGC 1 cut(s) 638
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 1 cut(s) 247
BalI TGGCCA 2 cut(s) 349, 658
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 5 cut(s) 126, 373, 658, 686, 767
BccI CCATC 4 cut(s) 134, 388, 667, 746
BceAI ACGGC 1 cut(s) 294
BcgI CGANNNNNNTGC 4 cut(s) 212, 246, 800, 834
BcnI CCSGG 2 cut(s) 165, 166
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 3 cut(s) 183, 488, 639
BfmI CTRYAG 4 cut(s) 428, 672, 784, 840
BfuAI ACCTGC 1 cut(s) 421
BisI GCNGC 8 cut(s) 115, 332, 387, 672, 675, 678, 693, 781
BlsI GCNGC 8 cut(s) 116, 333, 388, 673, 676, 679, 694, 782
BmcAI AGTACT 1 cut(s) 892
Bme1390I CCNGG 2 cut(s) 165, 166
Bme18I GGWCC 1 cut(s) 247
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 3 cut(s) 247, 603, 873
BmiI GGNNCC 3 cut(s) 402, 411, 577
BmrFI CCNGG 2 cut(s) 165, 166
BmsI GCATC 1 cut(s) 798
BmtI GCTAGC 1 cut(s) 642
BpiI GAAGAC 1 cut(s) 150
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpmI CTGGAG 1 cut(s) 529
Bpu14I TTCGAA 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 2 cut(s) 165, 166
BsaJI CCNNGG 3 cut(s) 163, 164, 606
BsaWI WCCGGW 2 cut(s) 68, 727
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 3 cut(s) 234, 478, 882
Bse118I RCCGGY 1 cut(s) 324
Bse1I ACTGG 4 cut(s) 512, 577, 659, 807
Bse3DI GCAATG 1 cut(s) 666
BseAI TCCGGA 2 cut(s) 68, 727
BseDI CCNNGG 3 cut(s) 163, 164, 606
BseGI GGATG 3 cut(s) 268, 920, 944
BseLI CCNNNNNNNGG 3 cut(s) 234, 478, 882
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 2 cut(s) 30, 485
BseNI ACTGG 4 cut(s) 512, 577, 659, 807
BseRI GAGGAG 2 cut(s) 43, 940
BseXI GCAGC 5 cut(s) 126, 373, 658, 686, 767
BsgI GTGCAG 1 cut(s) 133
BshFI GGCC 5 cut(s) 349, 605, 658, 695, 875
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 7 cut(s) 69, 80, 107, 132, 165, 325, 728
BslFI GGGAC 2 cut(s) 146, 700
BslI CCNNNNNNNGG 3 cut(s) 234, 478, 882
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 2 cut(s) 146, 700
BsmI GAATGC 1 cut(s) 89
BsnI GGCC 5 cut(s) 349, 605, 658, 695, 875
BsoBI CYCGRG 1 cut(s) 164
Bsp119I TTCGAA 1 cut(s) 456
Bsp13I TCCGGA 2 cut(s) 68, 727
Bsp143I GATC 3 cut(s) 304, 424, 518
BspACI CCGC 7 cut(s) 42, 213, 322, 332, 678, 692, 985
BspANI GGCC 5 cut(s) 349, 605, 658, 695, 875
BspCNI CTCAG 2 cut(s) 29, 486
BspEI TCCGGA 2 cut(s) 68, 727
BspLI GGNNCC 3 cut(s) 402, 411, 577
BspMAI CTGCAG 2 cut(s) 432, 676
BspMI ACCTGC 1 cut(s) 421
BspOI GCTAGC 1 cut(s) 642
BspPI GGATC 2 cut(s) 312, 432
BspT104I TTCGAA 1 cut(s) 456
BsrDI GCAATG 1 cut(s) 666
BsrFI RCCGGY 1 cut(s) 324
BsrI ACTGG 4 cut(s) 512, 577, 659, 807
BssAI RCCGGY 1 cut(s) 324
BssECI CCNNGG 3 cut(s) 163, 164, 606
BssMI GATC 3 cut(s) 304, 424, 518
Bst4CI ACNGT 1 cut(s) 868
BstBI TTCGAA 1 cut(s) 456
BstC8I GCNNGC 5 cut(s) 112, 336, 373, 640, 735
BstDEI CTNAG 3 cut(s) 16, 494, 758
BstDSI CCRYGG 1 cut(s) 606
BstF5I GGATG 3 cut(s) 268, 920, 944
BstKTI GATC 3 cut(s) 307, 427, 521
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 3 cut(s) 304, 424, 518
BstMWI GCNNNNNNNGC 4 cut(s) 21, 490, 551, 677
BstNSI RCATGY 2 cut(s) 375, 737
BstSCI CCNGG 2 cut(s) 163, 164
BstSFI CTRYAG 4 cut(s) 428, 672, 784, 840
BstV1I GCAGC 5 cut(s) 126, 373, 658, 686, 767
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BsuRI GGCC 5 cut(s) 349, 605, 658, 695, 875
BtgI CCRYGG 1 cut(s) 606
BtgZI GCGATG 2 cut(s) 112, 526
BtsCI GGATG 3 cut(s) 268, 920, 944
BveI ACCTGC 1 cut(s) 421
Cac8I GCNNGC 5 cut(s) 112, 336, 373, 640, 735
Cfr10I RCCGGY 1 cut(s) 324
Cfr13I GGNCC 3 cut(s) 247, 603, 873
Cfr9I CCCGGG 1 cut(s) 164
Csp6I GTAC 1 cut(s) 891
CviAII CATG 6 cut(s) 12, 234, 372, 663, 734, 744
CviQI GTAC 1 cut(s) 891
DdeI CTNAG 3 cut(s) 16, 494, 758
DpnI GATC 3 cut(s) 306, 426, 520
DpnII GATC 3 cut(s) 304, 424, 518
EaeI YGGCCR 3 cut(s) 347, 656, 693
EciI GGCGGA 1 cut(s) 202
Eco32I GATATC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 247
Eco88I CYCGRG 1 cut(s) 164
EcoRV GATATC 1 cut(s) 208
EcoT22I ATGCAT 1 cut(s) 668
FaeI CATG 6 cut(s) 15, 237, 375, 666, 737, 747
FaqI GGGAC 2 cut(s) 146, 700
FatI CATG 6 cut(s) 11, 233, 371, 662, 733, 743
FauI CCCGC 1 cut(s) 329
Fnu4HI GCNGC 8 cut(s) 115, 332, 387, 672, 675, 678, 693, 781
FokI GGATG 3 cut(s) 255, 907, 931
Fsp4HI GCNGC 8 cut(s) 115, 332, 387, 672, 675, 678, 693, 781
FspBI CTAG 3 cut(s) 183, 488, 639
GluI GCNGC 8 cut(s) 115, 332, 387, 672, 675, 678, 693, 781
GsuI CTGGAG 1 cut(s) 529
HaeIII GGCC 5 cut(s) 349, 605, 658, 695, 875
HapII CCGG 7 cut(s) 69, 80, 107, 132, 165, 325, 728
Hin1II CATG 6 cut(s) 15, 237, 375, 666, 737, 747
HincII GTYRAC 2 cut(s) 295, 586
HindII GTYRAC 2 cut(s) 295, 586
HpaII CCGG 7 cut(s) 69, 80, 107, 132, 165, 325, 728
HphI GGTGA 2 cut(s) 817, 951
Hpy166II GTNNAC 2 cut(s) 295, 586
Hpy188I TCNGA 7 cut(s) 19, 31, 58, 94, 473, 822, 1033
Hpy188III TCNNGA 4 cut(s) 69, 647, 706, 728
Hpy8I GTNNAC 2 cut(s) 295, 586
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 3 cut(s) 431, 589, 940
HpyCH4III ACNGT 1 cut(s) 868
HpyCH4V TGCA 9 cut(s) 114, 233, 355, 371, 430, 666, 674, 796, 811
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 490, 551, 677
HpyF3I CTNAG 3 cut(s) 16, 494, 758
Hsp92II CATG 6 cut(s) 15, 237, 375, 666, 737, 747
Kpn2I TCCGGA 2 cut(s) 68, 727
Kzo9I GATC 3 cut(s) 304, 424, 518
LmnI GCTCC 3 cut(s) 481, 730, 1034
Lsp1109I GCAGC 5 cut(s) 126, 373, 658, 686, 767
LweI GCATC 1 cut(s) 798
MaeI CTAG 3 cut(s) 183, 488, 639
MaeIII GTNAC 4 cut(s) 3, 523, 846, 862
MalI GATC 3 cut(s) 306, 426, 520
MboI GATC 3 cut(s) 304, 424, 518
MboII GAAGA 3 cut(s) 155, 486, 781
MflI RGATCY 1 cut(s) 424
MlsI TGGCCA 2 cut(s) 349, 658
MluCI AATT 2 cut(s) 450, 989
MluNI TGGCCA 2 cut(s) 349, 658
MlyI GAGTC 3 cut(s) 44, 83, 911
MmeI TCCRAC 3 cut(s) 54, 72, 402
Mox20I TGGCCA 2 cut(s) 349, 658
Mph1103I ATGCAT 1 cut(s) 668
MroI TCCGGA 2 cut(s) 68, 727
MroXI GAANNNNTTC 1 cut(s) 223
MscI TGGCCA 2 cut(s) 349, 658
MseI TTAA 4 cut(s) 362, 449, 791, 992
MslI CAYNNNNRTG 1 cut(s) 10
Msp20I TGGCCA 2 cut(s) 349, 658
MspI CCGG 7 cut(s) 69, 80, 107, 132, 165, 325, 728
MspR9I CCNGG 2 cut(s) 165, 166
Mva1269I GAATGC 1 cut(s) 89
MwoI GCNNNNNNNGC 4 cut(s) 21, 490, 551, 677
NciI CCSGG 2 cut(s) 165, 166
NdeII GATC 3 cut(s) 304, 424, 518
NheI GCTAGC 1 cut(s) 638
NlaIII CATG 6 cut(s) 15, 237, 375, 666, 737, 747
NlaIV GGNNCC 3 cut(s) 402, 411, 577
NmuCI GTSAC 1 cut(s) 3
NsiI ATGCAT 1 cut(s) 668
NspI RCATGY 2 cut(s) 375, 737
NspV TTCGAA 1 cut(s) 456
PaeI GCATGC 2 cut(s) 375, 737
PctI GAATGC 1 cut(s) 89
PdmI GAANNNNTTC 1 cut(s) 223
PfeI GAWTC 8 cut(s) 101, 122, 135, 224, 238, 566, 709, 740
PkrI GCNGC 8 cut(s) 116, 333, 388, 673, 676, 679, 694, 782
PleI GAGTC 3 cut(s) 44, 82, 911
PpsI GAGTC 3 cut(s) 44, 82, 911
PshBI ATTAAT 1 cut(s) 791
PspN4I GGNNCC 3 cut(s) 402, 411, 577
PspPI GGNCC 3 cut(s) 247, 603, 873
PstI CTGCAG 2 cut(s) 432, 676
PsuI RGATCY 1 cut(s) 424
RsaI GTAC 1 cut(s) 892
RsaNI GTAC 1 cut(s) 891
RseI CAYNNNNRTG 1 cut(s) 10
SaqAI TTAA 4 cut(s) 362, 449, 791, 992
SatI GCNGC 8 cut(s) 115, 332, 387, 672, 675, 678, 693, 781
Sau3AI GATC 3 cut(s) 304, 424, 518
Sau96I GGNCC 3 cut(s) 247, 603, 873
ScaI AGTACT 1 cut(s) 892
SchI GAGTC 3 cut(s) 44, 83, 911
ScrFI CCNGG 2 cut(s) 165, 166
SfaNI GCATC 1 cut(s) 798
SfcI CTRYAG 4 cut(s) 428, 672, 784, 840
SfuI TTCGAA 1 cut(s) 456
SinI GGWCC 1 cut(s) 247
SmaI CCCGGG 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SphI GCATGC 2 cut(s) 375, 737
Sse9I AATT 2 cut(s) 450, 989
SsiI CCGC 7 cut(s) 42, 213, 322, 332, 678, 692, 985
SspMI CTAG 3 cut(s) 183, 488, 639
StyD4I CCNGG 2 cut(s) 163, 164
TaaI ACNGT 1 cut(s) 868
TaqI TCGA 5 cut(s) 141, 204, 456, 564, 859
TasI AATT 2 cut(s) 450, 989
TatI WGTACW 1 cut(s) 890
TauI GCSGC 3 cut(s) 334, 680, 695
TfiI GAWTC 8 cut(s) 101, 122, 135, 224, 238, 566, 709, 740
Tru1I TTAA 4 cut(s) 362, 449, 791, 992
Tru9I TTAA 4 cut(s) 362, 449, 791, 992
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 5 cut(s) 114, 386, 671, 674, 780
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 4 cut(s) 127, 257, 529, 714
TspGWI ACGGA 4 cut(s) 217, 276, 280, 623
TspMI CCCGGG 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 247
VspI ATTAAT 1 cut(s) 791
XceI RCATGY 2 cut(s) 375, 737
XmaI CCCGGG 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 223
XspI CTAG 3 cut(s) 183, 488, 639
ZrmI AGTACT 1 cut(s) 892
Zsp2I ATGCAT 1 cut(s) 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.