AT1G70670

caleosin-related family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011412
Physical Location & Seq
Forward (+)
26644565 .. 26646200
1636 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G70670.1

Sequence Viewer

Length: 588 bp
ATGGCTTCCTCTATTTCCACTGGAGTGAAATTTGTTCCAGAAGAAGATAATTTCTTGCAGAGACATGTCGCTTTTTTCGATAGGAACAAAGATGGTATCGTTTATCCCTCGGAGACATTTCAAGGATTTAGAGCAATTGGGTGTGGATATTTGTTGTCAGCAGTCGCTTCTGTGTTCATAAACATAGGTCTCAGCAGCAAAACTCGTCCGGGTAAAGGATTCTCTATCTGGTTTCCTATAGAGGTTAAGAATATTCACCTTGCCAAACACGGAAGCGATTCAGGCGTTTACGACAAAGATGGACGGTTTGTTGCTTCGAAGTTTGAGGAGATATTTACGAAGCATGCACACACACATCGCGATGCTTTGACCAACGAGGAACTCAAACAACTCCTAAAGGCAAACAAAGAACCTAATGATCGTAAAGGATGGCTTGCAGGGTATACGGAGTGGAAGGTATTGCATTATTTGTGTAAAGACAAGAATGGTTTGTTGCACAAAGACACAGTGAGAGCTGCCTACGATGGTTCTCTTTTCGAAAAACTCGAGAAACAAAGATCTTCTAAAACTTCTAAGAAACATCCATAA

Protein Analysis

195

Amino Acids

22.09

Weight (kDa)

9.39

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Caleosin PF05042 16 - 182 2.7e-70 Caleosin related protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70670
fragaria_vesca FvH4_4g33760 FvH4_4g33760
malus_domestica MD13G1029500.v1.1 MD16G1020300.v1.1
prunus_persica Prupe.1G332000_v2.0.a1 Prupe.1G332000_v2.0.a1 Prupe.1G332000_v2.0.a1
pyrus_communis pycom13g01800 pycom16g01820
rosa_chinensis RchiOBHm_Chr4g0443291
rosa_laevigata RLG00000005940
rosa_multiflora Rmu_ssc0000122.1_g000004
rosa_roxburghii Rroxscaffold_5G00383880
rosa_rugosa Rorug04G0345400
rosa_samantha Rh4AG400300 Rh4BG411900 Rh4CG427200 Rh4DG407200
rosa_wichuraiana Rw4G034530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 443
AccII CGCG 1 cut(s) 360
AcsI RAATTY 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 215
AflIII ACRYGT 1 cut(s) 64
AgsI TTSAA 1 cut(s) 122
AleI CACNNNNGTG 1 cut(s) 23
AluBI AGCT 1 cut(s) 515
AluI AGCT 1 cut(s) 515
Alw26I GTCTC 3 cut(s) 55, 107, 194
Ama87I CYCGRG 1 cut(s) 545
ApeKI GCWGC 2 cut(s) 195, 515
ApoI RAATTY 1 cut(s) 29
Asp700I GAANNNNTTC 1 cut(s) 277
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 248
AsuII TTCGAA 2 cut(s) 317, 537
AvaI CYCGRG 1 cut(s) 545
BbvI GCAGC 2 cut(s) 207, 502
BccI CCATC 4 cut(s) 86, 293, 423, 518
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 3 cut(s) 55, 107, 194
BfmI CTRYAG 1 cut(s) 237
BglII AGATCT 1 cut(s) 557
BisI GCNGC 2 cut(s) 196, 516
BlsI GCNGC 2 cut(s) 197, 517
Bme1390I CCNGG 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 545
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 352
BpmI CTGGAG 1 cut(s) 42
Bpu14I TTCGAA 2 cut(s) 317, 537
BpuMI CCSGG 1 cut(s) 210
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 434, 580
BseLI CCNNNNNNNGG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 205
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 2 cut(s) 207, 502
Bsh1236I CGCG 1 cut(s) 360
BsiHKCI CYCGRG 1 cut(s) 545
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 3 cut(s) 55, 107, 194
Bso31I GGTCTC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 545
Bsp119I TTCGAA 2 cut(s) 317, 537
Bsp143I GATC 2 cut(s) 418, 557
Bsp68I TCGCGA 1 cut(s) 360
BspCNI CTCAG 1 cut(s) 204
BspFNI CGCG 1 cut(s) 360
BspT104I TTCGAA 2 cut(s) 317, 537
BspTNI GGTCTC 1 cut(s) 194
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 2 cut(s) 418, 557
BssNAI GTATAC 1 cut(s) 444
Bst1107I GTATAC 1 cut(s) 444
Bst4CI ACNGT 2 cut(s) 306, 508
BstBI TTCGAA 2 cut(s) 317, 537
BstC8I GCNNGC 2 cut(s) 345, 435
BstDEI CTNAG 2 cut(s) 191, 573
BstF5I GGATG 2 cut(s) 434, 580
BstFNI CGCG 1 cut(s) 360
BstKTI GATC 2 cut(s) 421, 560
BstMAI GTCTC 3 cut(s) 55, 107, 194
BstMBI GATC 2 cut(s) 418, 557
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstNSI RCATGY 2 cut(s) 68, 347
BstSCI CCNGG 1 cut(s) 208
BstSFI CTRYAG 1 cut(s) 237
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 2 cut(s) 207, 502
BstX2I RGATCY 1 cut(s) 557
BstYI RGATCY 1 cut(s) 557
BstZ17I GTATAC 1 cut(s) 444
BtgZI GCGATG 2 cut(s) 341, 375
BtsCI GGATG 2 cut(s) 434, 580
BtsIMutI CAGTG 2 cut(s) 18, 513
BtuMI TCGCGA 1 cut(s) 360
Cac8I GCNNGC 2 cut(s) 345, 435
CviAII CATG 2 cut(s) 65, 344
CviJI RGCY 3 cut(s) 5, 433, 515
CviKI_1 RGCY 3 cut(s) 5, 433, 515
DdeI CTNAG 2 cut(s) 191, 573
DpnI GATC 2 cut(s) 420, 559
DpnII GATC 2 cut(s) 418, 557
Eco31I GGTCTC 1 cut(s) 194
Eco88I CYCGRG 1 cut(s) 545
FaeI CATG 2 cut(s) 68, 347
FaiI YATR 7 cut(s) 66, 179, 185, 239, 345, 444, 586
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FatI CATG 2 cut(s) 64, 343
FblI GTMKAC 1 cut(s) 443
Fnu4HI GCNGC 2 cut(s) 196, 516
FokI GGATG 2 cut(s) 441, 567
Fsp4HI GCNGC 2 cut(s) 196, 516
GluI GCNGC 2 cut(s) 196, 516
GsuI CTGGAG 1 cut(s) 42
HapII CCGG 1 cut(s) 209
Hin1II CATG 2 cut(s) 68, 347
HinfI GANTC 2 cut(s) 219, 278
HpaII CCGG 1 cut(s) 209
HphI GGTGA 1 cut(s) 248
Hpy166II GTNNAC 2 cut(s) 289, 444
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 3 cut(s) 38, 359, 547
Hpy8I GTNNAC 2 cut(s) 289, 444
HpyAV CCTTC 1 cut(s) 448
HpyCH4III ACNGT 2 cut(s) 306, 508
HpyCH4V TGCA 5 cut(s) 58, 347, 437, 463, 496
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpyF3I CTNAG 2 cut(s) 191, 573
Hsp92II CATG 2 cut(s) 68, 347
Kzo9I GATC 2 cut(s) 418, 557
LpnPI CCDG 6 cut(s) 6, 51, 214, 222, 267, 423
Lsp1109I GCAGC 2 cut(s) 207, 502
LweI GCATC 1 cut(s) 352
MalI GATC 2 cut(s) 420, 559
MboI GATC 2 cut(s) 418, 557
MboII GAAGA 3 cut(s) 53, 56, 552
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 1 cut(s) 557
MluCI AATT 3 cut(s) 29, 49, 135
MnlI CCTC 5 cut(s) 19, 118, 235, 319, 370
MroXI GAANNNNTTC 1 cut(s) 277
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 2 cut(s) 23, 360
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 210
MunI CAATTG 1 cut(s) 135
MvnI CGCG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 282
NciI CCSGG 1 cut(s) 210
NdeII GATC 2 cut(s) 418, 557
NlaIII CATG 2 cut(s) 68, 347
NruI TCGCGA 1 cut(s) 360
NspI RCATGY 2 cut(s) 68, 347
NspV TTCGAA 2 cut(s) 317, 537
OliI CACNNNNGTG 1 cut(s) 23
PaeI GCATGC 1 cut(s) 347
PaeR7I CTCGAG 1 cut(s) 545
PciI ACATGT 1 cut(s) 64
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 543
PdmI GAANNNNTTC 1 cut(s) 277
PfeI GAWTC 2 cut(s) 219, 278
PkrI GCNGC 2 cut(s) 197, 517
PscI ACATGT 1 cut(s) 64
PsuI RGATCY 1 cut(s) 557
RruI TCGCGA 1 cut(s) 360
RseI CAYNNNNRTG 2 cut(s) 23, 360
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 2 cut(s) 196, 516
Sau3AI GATC 2 cut(s) 418, 557
ScrFI CCNGG 1 cut(s) 210
SetI ASST 6 cut(s) 190, 246, 261, 415, 459, 517
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 237
Sfr274I CTCGAG 1 cut(s) 545
SfuI TTCGAA 2 cut(s) 317, 537
SlaI CTCGAG 1 cut(s) 545
SmiMI CAYNNNNRTG 2 cut(s) 23, 360
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
SphI GCATGC 1 cut(s) 347
Sse9I AATT 3 cut(s) 29, 49, 135
SspI AATATT 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 2 cut(s) 306, 508
TaqI TCGA 4 cut(s) 78, 317, 537, 546
TasI AATT 3 cut(s) 29, 49, 135
TfiI GAWTC 2 cut(s) 219, 278
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 2 cut(s) 25, 513
TseI GCWGC 2 cut(s) 195, 515
TspDTI ATGAA 1 cut(s) 166
TspGWI ACGGA 2 cut(s) 285, 461
TspRI CASTG 2 cut(s) 25, 513
XapI RAATTY 1 cut(s) 29
XceI RCATGY 2 cut(s) 68, 347
XhoI CTCGAG 1 cut(s) 545
XmiI GTMKAC 1 cut(s) 443
XmnI GAANNNNTTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.