pycom13g01800

Peroxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011412
Physical Location & Seq
Forward (+)
1202075 .. 1204267
2193 bp
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UTR
Exon/CDS
Intron
pycom13g01800.3

Sequence Viewer

Length: 612 bp
ATGGGTTCCTCTTCTCTGTCAGAAAACAATAAGCAGCAAGAGAATAACGGTGGGAAATTCGCACCCAACGAACAGGACGTTCTGCAGAGACATGTAGCCTTCTTTGACAGGAACCACGATGGCATTGTTTATCCTTGGGAAACTTTTCAAGGTTTTCGTGCGATCGGGTGTGGCATTTTGTTGTCCACAGCCAGTGCCTTTCTCATCAACGCGGCCCTCAGTCAAAAGACTCGCCAGGGAAAGTTTCCTTCTCTACTTTTCCCAATTGAAGTTAAAAACATCCATAAAGCCAAACATGGCAGTGACTCTGGTGTCTATGATAAAGAAGGAAGGTTTGTTCCGTTAAAATTTGAAGAAATCTTTGCAAAGCATGCCCATACGCATCCACATTCGTTGACATCAGATGAACTGATGGGCATGCTAAAGGCTAATAGGGTTCCCAAGGATTATGCAGGATGGGTTGCTGCCTATACAGAATGGAAGATCTTATACGTGCTCTGCAAGGACAAGAATGGTTTGCTGCACAAAGATACCGTTAGAGCTGTTTACGACGGAACCTTGTTCGAACGCATGGAGAAGGAAAAATCCGGCGGAGACAAAAAGAAAGAGTAA

Protein Analysis

204

Amino Acids

22.92

Weight (kDa)

8.93

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70670
fragaria_vesca FvH4_4g33760 FvH4_4g33760
malus_domestica MD13G1029500.v1.1 MD16G1020300.v1.1
prunus_persica Prupe.1G332000_v2.0.a1 Prupe.1G332000_v2.0.a1 Prupe.1G332000_v2.0.a1
pyrus_communis pycom13g01800 pycom16g01820
rosa_chinensis RchiOBHm_Chr4g0443291
rosa_laevigata RLG00000005940
rosa_multiflora Rmu_ssc0000122.1_g000004
rosa_roxburghii Rroxscaffold_5G00383880
rosa_rugosa Rorug04G0345400
rosa_samantha Rh4AG400300 Rh4BG411900 Rh4CG427200 Rh4DG407200
rosa_wichuraiana Rw4G034530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
AccII CGCG 1 cut(s) 212
AciI CCGC 2 cut(s) 212, 591
AcsI RAATTY 2 cut(s) 56, 347
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 3 cut(s) 149, 269, 353
AjnI CCWGG 1 cut(s) 234
AloI GAACNNNNNNTCC 2 cut(s) 321, 353
AluBI AGCT 1 cut(s) 542
AluI AGCT 1 cut(s) 542
Alw21I GWGCWC 1 cut(s) 498
Alw26I GTCTC 2 cut(s) 82, 588
AoxI GGCC 1 cut(s) 213
ApeKI GCWGC 3 cut(s) 34, 464, 520
ApoI RAATTY 2 cut(s) 56, 347
Asp700I GAANNNNTTC 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 214
AsuII TTCGAA 1 cut(s) 564
BarI GAAGNNNNNNTAC 2 cut(s) 473, 505
Bbv12I GWGCWC 1 cut(s) 498
BbvI GCAGC 3 cut(s) 46, 451, 507
BccI CCATC 3 cut(s) 113, 406, 450
BciT130I CCWGG 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 82, 588
BfmI CTRYAG 1 cut(s) 83
BglII AGATCT 1 cut(s) 483
BisI GCNGC 4 cut(s) 35, 213, 465, 521
BlsI GCNGC 4 cut(s) 36, 214, 466, 522
Bme1390I CCNGG 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 4 cut(s) 7, 113, 438, 556
BmrFI CCNGG 1 cut(s) 236
BmsI GCATC 1 cut(s) 391
Bpu14I TTCGAA 1 cut(s) 564
BsaAI YACGTR 1 cut(s) 493
BsaJI CCNNGG 3 cut(s) 134, 235, 441
Bse1I ACTGG 1 cut(s) 192
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 3 cut(s) 134, 235, 441
BseGI GGATG 3 cut(s) 279, 382, 461
BseMII CTCAG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 192
BseXI GCAGC 3 cut(s) 46, 451, 507
BsgI GTGCAG 1 cut(s) 506
Bsh1236I CGCG 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 165
BsiHKAI GWGCWC 1 cut(s) 498
BsiSI CCGG 1 cut(s) 588
BsmAI GTCTC 2 cut(s) 82, 588
BsnI GGCC 1 cut(s) 215
Bsp119I TTCGAA 1 cut(s) 564
Bsp1286I GDGCHC 1 cut(s) 498
Bsp143I GATC 2 cut(s) 162, 483
BspACI CCGC 2 cut(s) 212, 591
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 231
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 4 cut(s) 7, 113, 438, 556
BspMAI CTGCAG 1 cut(s) 87
BspT104I TTCGAA 1 cut(s) 564
BsrI ACTGG 1 cut(s) 192
BssECI CCNNGG 3 cut(s) 134, 235, 441
BssMI GATC 2 cut(s) 162, 483
BssT1I CCWWGG 2 cut(s) 134, 441
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 2 cut(s) 50, 535
Bst6I CTCTTC 1 cut(s) 16
BstAPI GCANNNNNTGC 1 cut(s) 371
BstBAI YACGTR 1 cut(s) 493
BstBI TTCGAA 1 cut(s) 564
BstC8I GCNNGC 2 cut(s) 372, 419
BstDEI CTNAG 1 cut(s) 218
BstF5I GGATG 3 cut(s) 279, 382, 461
BstFNI CGCG 1 cut(s) 212
BstKTI GATC 2 cut(s) 165, 486
BstMAI GTCTC 2 cut(s) 82, 588
BstMBI GATC 2 cut(s) 162, 483
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 1 cut(s) 236
BstNSI RCATGY 3 cut(s) 95, 374, 421
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 83
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 3 cut(s) 46, 451, 507
BstX2I RGATCY 1 cut(s) 483
BstYI RGATCY 1 cut(s) 483
BsuRI GGCC 1 cut(s) 215
BtsCI GGATG 3 cut(s) 279, 382, 461
BtsI GCAGTG 1 cut(s) 307
BtsIMutI CAGTG 2 cut(s) 199, 307
Cac8I GCNNGC 2 cut(s) 372, 419
Cfr13I GGNCC 1 cut(s) 214
CspCI CAANNNNNGTGG 2 cut(s) 375, 410
CviAII CATG 5 cut(s) 92, 296, 371, 418, 571
CviJI RGCY 6 cut(s) 98, 191, 215, 290, 428, 542
CviKI_1 RGCY 6 cut(s) 98, 191, 215, 290, 428, 542
DdeI CTNAG 1 cut(s) 218
DpnI GATC 2 cut(s) 164, 485
DpnII GATC 2 cut(s) 162, 483
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
EciI GGCGGA 1 cut(s) 606
Eco130I CCWWGG 2 cut(s) 134, 441
EcoRII CCWGG 1 cut(s) 234
EcoT14I CCWWGG 2 cut(s) 134, 441
ErhI CCWWGG 2 cut(s) 134, 441
FaeI CATG 5 cut(s) 95, 299, 374, 421, 574
FatI CATG 5 cut(s) 91, 295, 370, 417, 570
Fnu4HI GCNGC 4 cut(s) 35, 213, 465, 521
FokI GGATG 3 cut(s) 266, 369, 468
Fsp4HI GCNGC 4 cut(s) 35, 213, 465, 521
GluI GCNGC 4 cut(s) 35, 213, 465, 521
HaeIII GGCC 1 cut(s) 215
HapII CCGG 1 cut(s) 588
Hin1II CATG 5 cut(s) 95, 299, 374, 421, 574
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 2 cut(s) 229, 305
HpaII CCGG 1 cut(s) 588
Hpy166II GTNNAC 3 cut(s) 186, 396, 547
Hpy188I TCNGA 2 cut(s) 22, 403
Hpy8I GTNNAC 3 cut(s) 186, 396, 547
Hpy99I CGWCG 1 cut(s) 554
HpyAV CCTTC 5 cut(s) 109, 258, 320, 324, 571
HpyCH4III ACNGT 2 cut(s) 50, 535
HpyCH4IV ACGT 2 cut(s) 78, 492
HpyCH4V TGCA 5 cut(s) 85, 365, 452, 501, 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 1 cut(s) 218
HpySE526I ACGT 2 cut(s) 78, 492
Hsp92II CATG 5 cut(s) 95, 299, 374, 421, 574
Kzo9I GATC 2 cut(s) 162, 483
LpnPI CCDG 8 cut(s) 59, 94, 205, 221, 248, 294, 438, 601
Lsp1109I GCAGC 3 cut(s) 46, 451, 507
LweI GCATC 1 cut(s) 391
MaeII ACGT 2 cut(s) 78, 492
MaeIII GTNAC 1 cut(s) 302
MalI GATC 2 cut(s) 164, 485
MboI GATC 2 cut(s) 162, 483
MboII GAAGA 3 cut(s) 3, 365, 493
MfeI CAATTG 1 cut(s) 264
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 498
MluCI AATT 3 cut(s) 56, 264, 347
MlyI GAGTC 2 cut(s) 223, 299
MnlI CCTC 2 cut(s) 19, 227
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 2 cut(s) 273, 344
MslI CAYNNNNRTG 1 cut(s) 300
MspI CCGG 1 cut(s) 588
MspR9I CCNGG 1 cut(s) 236
MunI CAATTG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 236
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeII GATC 2 cut(s) 162, 483
NlaIII CATG 5 cut(s) 95, 299, 374, 421, 574
NlaIV GGNNCC 4 cut(s) 7, 113, 438, 556
NmuCI GTSAC 1 cut(s) 302
NspI RCATGY 3 cut(s) 95, 374, 421
NspV TTCGAA 1 cut(s) 564
PaeI GCATGC 2 cut(s) 374, 421
PciI ACATGT 1 cut(s) 91
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 75
PdmI GAANNNNTTC 1 cut(s) 144
PkrI GCNGC 4 cut(s) 36, 214, 466, 522
Ple19I CGATCG 1 cut(s) 165
PleI GAGTC 2 cut(s) 223, 299
PpsI GAGTC 2 cut(s) 223, 299
Ppu21I YACGTR 1 cut(s) 493
PscI ACATGT 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 4 cut(s) 7, 113, 438, 556
PspPI GGNCC 1 cut(s) 214
PstI CTGCAG 1 cut(s) 87
PsuI RGATCY 1 cut(s) 483
PvuI CGATCG 1 cut(s) 165
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 2 cut(s) 273, 344
SatI GCNGC 4 cut(s) 35, 213, 465, 521
Sau3AI GATC 2 cut(s) 162, 483
Sau96I GGNCC 1 cut(s) 214
SchI GAGTC 2 cut(s) 223, 299
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 1 cut(s) 498
SetI ASST 6 cut(s) 81, 154, 335, 495, 544, 560
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 83
SfuI TTCGAA 1 cut(s) 564
SmiMI CAYNNNNRTG 1 cut(s) 300
SphI GCATGC 2 cut(s) 374, 421
Sse9I AATT 3 cut(s) 56, 264, 347
SsiI CCGC 2 cut(s) 212, 591
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 2 cut(s) 134, 441
TaaI ACNGT 2 cut(s) 50, 535
TaiI ACGT 2 cut(s) 81, 495
TaqI TCGA 1 cut(s) 564
TasI AATT 3 cut(s) 56, 264, 347
TauI GCSGC 1 cut(s) 215
Tru1I TTAA 2 cut(s) 273, 344
Tru9I TTAA 2 cut(s) 273, 344
TscAI CASTG 2 cut(s) 199, 307
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 3 cut(s) 34, 464, 520
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 1 cut(s) 420
TspGWI ACGGA 2 cut(s) 330, 567
TspRI CASTG 2 cut(s) 199, 307
XapI RAATTY 2 cut(s) 56, 347
XceI RCATGY 3 cut(s) 95, 374, 421
XmnI GAANNNNTTC 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.