Rh4BG411900

Peroxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0011412
Physical Location & Seq
Forward (+)
56068933 .. 56072063
3131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG411900.1

Sequence Viewer

Length: 612 bp
ATGGGTTCCTCTTCTGTATCAGAAACCAAGAATATTCAAGAAGTTAGTGGGAAATTTGTTCCGAATGAACACGATGCTCTGCAGAGGCATGTAGCATTCTTCGACAGGAATCACGATGGCATTGTTTATCCTTGGGAGACCTTTCAAGGTTTTCGTGCAATTGGGTGTGGCCTCATCTTGTCCTCGTTCAGTGCTATCTTCATCAACTTCGGTCTCAGTCGGCAGACTCGCCCGGGAAAGTCGTTTTCTCTGCTGTTTCCGATTGAAGTTAGAAATATTCACAAAGCCAAACACGGCAGTGACTCAGGCGTCTACGACAGTGAAGGAAGGTTTGTTCCCTGTAAGTTTGAAGAGATTTTCATCAAGCATGCACATACTAATCCCAATGCTTTGACATCCGCCGAACTGAATGGGCTGCTCAAAGCGAATAGGGAATCAAATGATCGCAGAGGATGGTTGGCTGCCTGGACTGAATGGAAGATCCTGTATTTGCTTTGCAAGGACAAGCAGGGTTTACTGCACAAAGAAACCATTAGAGCTGTTTACGATGGGAGCTTGTTCGACCGTATGGAGAAGGAAAGATCAGCTGCAGCAGCCAAGAAGAAAGAGTAA

Protein Analysis

203

Amino Acids

23.0

Weight (kDa)

9.11

Isoelectric Point (pI)

42.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Caleosin PF05042 24 - 190 5.2e-72 Caleosin related protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70670
fragaria_vesca FvH4_4g33760 FvH4_4g33760
malus_domestica MD13G1029500.v1.1 MD16G1020300.v1.1
prunus_persica Prupe.1G332000_v2.0.a1 Prupe.1G332000_v2.0.a1 Prupe.1G332000_v2.0.a1
pyrus_communis pycom13g01800 pycom16g01820
rosa_chinensis RchiOBHm_Chr4g0443291
rosa_laevigata RLG00000005940
rosa_multiflora Rmu_ssc0000122.1_g000004
rosa_roxburghii Rroxscaffold_5G00383880
rosa_rugosa Rorug04G0345400
rosa_samantha Rh4AG400300 Rh4BG411900 Rh4CG427200 Rh4DG407200
rosa_wichuraiana Rw4G034530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
AccI GTMKAC 1 cut(s) 312
AciI CCGC 1 cut(s) 399
AclWI GGATC 1 cut(s) 475
AcsI RAATTY 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 309
AgsI TTSAA 4 cut(s) 38, 146, 266, 350
AjnI CCWGG 1 cut(s) 464
AleI CACNNNNGTG 1 cut(s) 297
AloI GAACNNNNNNTCC 2 cut(s) 318, 350
AluBI AGCT 3 cut(s) 539, 555, 587
AluI AGCT 3 cut(s) 539, 555, 587
Alw26I GTCTC 2 cut(s) 131, 218
AlwI GGATC 1 cut(s) 475
Ama87I CYCGRG 1 cut(s) 232
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 5 cut(s) 415, 461, 587, 590, 593
ApoI RAATTY 1 cut(s) 53
AsuC2I CCSGG 2 cut(s) 233, 234
AvaI CYCGRG 1 cut(s) 232
BbvI GCAGC 5 cut(s) 402, 448, 574, 602, 605
BccI CCATC 3 cut(s) 110, 447, 542
BceAI ACGGC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 466
BcnI CCSGG 2 cut(s) 233, 234
BcoDI GTCTC 2 cut(s) 131, 218
BfmI CTRYAG 2 cut(s) 80, 588
BisI GCNGC 5 cut(s) 416, 462, 588, 591, 594
BlsI GCNGC 5 cut(s) 417, 463, 589, 592, 595
Bme1390I CCNGG 3 cut(s) 233, 234, 466
BmeT110I CYCGRG 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 3 cut(s) 233, 234, 466
BmsI GCATC 1 cut(s) 64
BpuMI CCSGG 2 cut(s) 233, 234
BsaBI GATNNNNATC 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 309
BsaI GGTCTC 2 cut(s) 131, 218
BsaJI CCNNGG 2 cut(s) 131, 232
Bse8I GATNNNNATC 1 cut(s) 359
BseBI CCWGG 1 cut(s) 466
BseDI CCNNGG 2 cut(s) 131, 232
BseGI GGATG 2 cut(s) 395, 458
BseJI GATNNNNATC 1 cut(s) 359
BseMII CTCAG 2 cut(s) 229, 318
BseXI GCAGC 5 cut(s) 402, 448, 574, 602, 605
BsgI GTGCAG 1 cut(s) 503
Bsh1285I CGRYCG 1 cut(s) 565
BshFI GGCC 1 cut(s) 171
BsiEI CGRYCG 1 cut(s) 565
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 1 cut(s) 233
BsmAI GTCTC 2 cut(s) 131, 218
BsmI GAATGC 1 cut(s) 95
BsnI GGCC 1 cut(s) 171
Bso31I GGTCTC 2 cut(s) 131, 218
BsoBI CYCGRG 1 cut(s) 232
Bsp143I GATC 3 cut(s) 442, 480, 581
BspACI CCGC 1 cut(s) 399
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 2 cut(s) 228, 317
BspLI GGNNCC 1 cut(s) 7
BspMAI CTGCAG 2 cut(s) 84, 592
BspPI GGATC 1 cut(s) 475
BspTNI GGTCTC 2 cut(s) 131, 218
BssECI CCNNGG 2 cut(s) 131, 232
BssMI GATC 3 cut(s) 442, 480, 581
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 466
Bst4CI ACNGT 2 cut(s) 320, 566
Bst6I CTCTTC 2 cut(s) 16, 345
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 215, 304
BstF5I GGATG 2 cut(s) 395, 458
BstKTI GATC 3 cut(s) 445, 483, 584
BstMAI GTCTC 2 cut(s) 131, 218
BstMBI GATC 3 cut(s) 442, 480, 581
BstMCI CGRYCG 1 cut(s) 565
BstMWI GCNNNNNNNGC 1 cut(s) 593
BstNI CCWGG 1 cut(s) 466
BstNSI RCATGY 2 cut(s) 92, 371
BstSCI CCNGG 3 cut(s) 231, 232, 464
BstSFI CTRYAG 2 cut(s) 80, 588
BstV1I GCAGC 5 cut(s) 402, 448, 574, 602, 605
BstX2I RGATCY 1 cut(s) 480
BstYI RGATCY 1 cut(s) 480
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 2 cut(s) 395, 458
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 3 cut(s) 196, 304, 325
Cac8I GCNNGC 1 cut(s) 369
Cfr9I CCCGGG 1 cut(s) 232
CseI GACGC 1 cut(s) 298
CviAII CATG 2 cut(s) 89, 368
CviJI RGCY 8 cut(s) 171, 287, 415, 461, 539, 555, 587, 596
CviKI_1 RGCY 8 cut(s) 171, 287, 415, 461, 539, 555, 587, 596
DdeI CTNAG 2 cut(s) 215, 304
DpnI GATC 3 cut(s) 444, 482, 583
DpnII GATC 3 cut(s) 442, 480, 581
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
Eam1104I CTCTTC 2 cut(s) 16, 345
EarI CTCTTC 2 cut(s) 16, 345
EciI GGCGGA 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 131
Eco31I GGTCTC 2 cut(s) 131, 218
Eco88I CYCGRG 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 464
EcoT14I CCWWGG 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 2 cut(s) 92, 371
FaiI YATR 4 cut(s) 90, 369, 375, 569
FatI CATG 2 cut(s) 88, 367
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 5 cut(s) 416, 462, 588, 591, 594
FokI GGATG 2 cut(s) 382, 465
Fsp4HI GCNGC 5 cut(s) 416, 462, 588, 591, 594
GluI GCNGC 5 cut(s) 416, 462, 588, 591, 594
HaeIII GGCC 1 cut(s) 171
HapII CCGG 1 cut(s) 233
HgaI GACGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 2 cut(s) 92, 371
HinfI GANTC 4 cut(s) 109, 226, 302, 434
HpaII CCGG 1 cut(s) 233
Hpy166II GTNNAC 3 cut(s) 313, 515, 544
Hpy188I TCNGA 3 cut(s) 22, 63, 261
Hpy188III TCNNGA 2 cut(s) 38, 113
Hpy8I GTNNAC 3 cut(s) 313, 515, 544
HpyAV CCTTC 3 cut(s) 317, 321, 568
HpyCH4III ACNGT 2 cut(s) 320, 566
HpyCH4V TGCA 6 cut(s) 82, 158, 371, 498, 520, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 593
HpyF3I CTNAG 2 cut(s) 215, 304
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 2 cut(s) 92, 371
Kzo9I GATC 3 cut(s) 442, 480, 581
LmnI GCTCC 1 cut(s) 552
LpnPI CCDG 8 cut(s) 91, 246, 291, 352, 451, 478, 494, 497
Lsp1109I GCAGC 5 cut(s) 402, 448, 574, 602, 605
LweI GCATC 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 299
MalI GATC 3 cut(s) 444, 482, 583
MboI GATC 3 cut(s) 442, 480, 581
MboII GAAGA 5 cut(s) 3, 91, 190, 362, 490
MfeI CAATTG 1 cut(s) 159
MflI RGATCY 1 cut(s) 480
MluCI AATT 2 cut(s) 53, 159
MlyI GAGTC 2 cut(s) 220, 296
MnlI CCTC 5 cut(s) 19, 78, 182, 193, 443
MslI CAYNNNNRTG 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 587
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 3 cut(s) 233, 234, 466
MunI CAATTG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 95
MvaI CCWGG 1 cut(s) 466
MwoI GCNNNNNNNGC 1 cut(s) 593
NciI CCSGG 2 cut(s) 233, 234
NdeII GATC 3 cut(s) 442, 480, 581
NlaIII CATG 2 cut(s) 92, 371
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 299
NspI RCATGY 2 cut(s) 92, 371
OliI CACNNNNGTG 1 cut(s) 297
PaeI GCATGC 1 cut(s) 371
PctI GAATGC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 109, 434
PkrI GCNGC 5 cut(s) 417, 463, 589, 592, 595
PleI GAGTC 2 cut(s) 220, 296
PpsI GAGTC 2 cut(s) 220, 296
Psp6I CCWGG 1 cut(s) 464
PspGI CCWGG 1 cut(s) 464
PspN4I GGNNCC 1 cut(s) 7
PstI CTGCAG 2 cut(s) 84, 592
PsuI RGATCY 1 cut(s) 480
PvuII CAGCTG 1 cut(s) 587
RseI CAYNNNNRTG 1 cut(s) 297
SatI GCNGC 5 cut(s) 416, 462, 588, 591, 594
Sau3AI GATC 3 cut(s) 442, 480, 581
SchI GAGTC 2 cut(s) 220, 296
ScrFI CCNGG 3 cut(s) 233, 234, 466
SetI ASST 6 cut(s) 143, 151, 332, 541, 557, 589
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 2 cut(s) 80, 588
SmaI CCCGGG 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 297
SphI GCATGC 1 cut(s) 371
Sse9I AATT 2 cut(s) 53, 159
SsiI CCGC 1 cut(s) 399
SspI AATATT 2 cut(s) 34, 277
StyD4I CCNGG 3 cut(s) 231, 232, 464
StyI CCWWGG 1 cut(s) 131
TaaI ACNGT 2 cut(s) 320, 566
TaqI TCGA 2 cut(s) 102, 561
TaqII GACCGA 1 cut(s) 200
TasI AATT 2 cut(s) 53, 159
TfiI GAWTC 2 cut(s) 109, 434
TscAI CASTG 3 cut(s) 196, 304, 325
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 5 cut(s) 415, 461, 587, 590, 593
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 3 cut(s) 81, 190, 349
TspMI CCCGGG 1 cut(s) 232
TspRI CASTG 3 cut(s) 196, 304, 325
XapI RAATTY 1 cut(s) 53
XceI RCATGY 2 cut(s) 92, 371
XmaI CCCGGG 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.