Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011412

Physical Location & Seq

Genomic Coordinates Reverse (-)

31434432 .. 31437130

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G332000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGGTTCTTCTTCTTTACCAGCTAACAATAAATTCGTACCCAATGAACAAGACGTTCTGCAGAGACATGTAGCCTTCTTTGACAGGAACCATGACGGCATTGTTTATCCATGGGAGACTTTTCAAGGTTTTCGTGCAATTGGCTGTGGCATTCTGTTGTCCACAGCAAGTTCTTTTCTCATCAATGCGGCCCTCAGTCAGAAGACTCGCCCGGGAAAGTTCCCTTCTCCGCTTCTTCCCATTGAAGTCAAAAACATCCATAAAGCCAAACACGGGAGCGACTCCGGTGTCTATGATTCTCACGGAAGGTTTGTTCCTTCAAAGTTTGAAGAGATCTTCTGCAAGCATGCTCATACGCATCTGGATGCTTTGACATCGGATGAACTGATGGGCATGCTCAGGGCCAATAGGGAGCCAAAGGATTATGCAGGATGGGTTGCTAGCTGGACAGAATGGAAGATCCTCTATGTTCTTTGCAAGGACAACCGTGGTTTATTGCACAAAGATACAGTCAGAGCTGTTTATGATGGAAGCTTATTCGAACGCATGGAGAAGGAGAGAATCGAAAAATCAGCATCTAAAAAGAACGATGTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009819 GO:0010033 GO:0010035 GO:0016298 GO:0016787 GO:0016788 GO:0033993 GO:0042221 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

200

Amino Acids

22.53

Weight (kDa)

8.71

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70670
fragaria_vesca	FvH4_4g33760 FvH4_4g33760
malus_domestica	MD13G1029500.v1.1 MD16G1020300.v1.1
prunus_persica	Prupe.1G332000_v2.0.a1 Prupe.1G332000_v2.0.a1 Prupe.1G332000_v2.0.a1
pyrus_communis	pycom13g01800 pycom16g01820
rosa_chinensis	RchiOBHm_Chr4g0443291
rosa_laevigata	RLG00000005940
rosa_multiflora	Rmu_ssc0000122.1_g000004
rosa_roxburghii	Rroxscaffold_5G00383880
rosa_rugosa	Rorug04G0345400
rosa_samantha	Rh4AG400300 Rh4BG411900 Rh4CG427200 Rh4DG407200
rosa_wichuraiana	Rw4G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
AciI	CCGC	2 cut(s)	188, 230
AclWI	GGATC	1 cut(s)	454
AcsI	RAATTY	1 cut(s)	32
AfaI	GTAC	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	273
AflIII	ACRYGT	1 cut(s)	67
AgsI	TTSAA	4 cut(s)	125, 245, 321, 329
AloI	GAACNNNNNNTCC	2 cut(s)	297, 329
AluBI	AGCT	4 cut(s)	23, 444, 518, 534
AluI	AGCT	4 cut(s)	23, 444, 518, 534
Alw26I	GTCTC	2 cut(s)	58, 110
AlwI	GGATC	1 cut(s)	454
Ama87I	CYCGRG	1 cut(s)	211
AoxI	GGCC	2 cut(s)	189, 402
ApoI	RAATTY	1 cut(s)	32
ArsI	GACNNNNNNTTYG	2 cut(s)	495, 527
AspS9I	GGNCC	2 cut(s)	190, 402
AsuC2I	CCSGG	2 cut(s)	212, 213
AsuII	TTCGAA	1 cut(s)	540
AsuNHI	GCTAGC	1 cut(s)	440
AvaI	CYCGRG	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	209
BccI	CCATC	3 cut(s)	382, 426, 521
BceAI	ACGGC	1 cut(s)	112
BcnI	CCSGG	2 cut(s)	212, 213
BcoDI	GTCTC	2 cut(s)	58, 110
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	59
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	2 cut(s)	212, 213
BmeT110I	CYCGRG	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	190, 402
BmiI	GGNNCC	2 cut(s)	89, 414
BmrFI	CCNGG	2 cut(s)	212, 213
BmsI	GCATC	3 cut(s)	355, 367, 584
BmtI	GCTAGC	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	209
Bpu10I	CCTNAGC	1 cut(s)	398
Bpu14I	TTCGAA	1 cut(s)	540
BpuMI	CCSGG	2 cut(s)	212, 213
BsaJI	CCNNGG	3 cut(s)	110, 211, 487
BsaWI	WCCGGW	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
BseDI	CCNNGG	3 cut(s)	110, 211, 487
BseGI	GGATG	4 cut(s)	255, 370, 385, 437
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMII	CTCAG	2 cut(s)	208, 412
BshFI	GGCC	2 cut(s)	191, 404
BsiHKCI	CYCGRG	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	212, 285
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmAI	GTCTC	2 cut(s)	58, 110
BsmI	GAATGC	1 cut(s)	150
BsnI	GGCC	2 cut(s)	191, 404
BsoBI	CYCGRG	1 cut(s)	211
Bsp119I	TTCGAA	1 cut(s)	540
Bsp143I	GATC	2 cut(s)	333, 459
Bsp19I	CCATGG	1 cut(s)	110
BspACI	CCGC	2 cut(s)	188, 230
BspANI	GGCC	2 cut(s)	191, 404
BspCNI	CTCAG	2 cut(s)	207, 411
BspLI	GGNNCC	2 cut(s)	89, 414
BspMAI	CTGCAG	1 cut(s)	63
BspOI	GCTAGC	1 cut(s)	444
BspPI	GGATC	1 cut(s)	454
BspT104I	TTCGAA	1 cut(s)	540
BssECI	CCNNGG	3 cut(s)	110, 211, 487
BssMI	GATC	2 cut(s)	333, 459
BssT1I	CCWWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	488, 511
Bst6I	CTCTTC	1 cut(s)	324
BstBI	TTCGAA	1 cut(s)	540
BstC8I	GCNNGC	4 cut(s)	344, 348, 395, 442
BstDEI	CTNAG	2 cut(s)	194, 398
BstDSI	CCRYGG	2 cut(s)	110, 487
BstF5I	GGATG	4 cut(s)	255, 370, 385, 437
BstKTI	GATC	2 cut(s)	336, 462
BstMAI	GTCTC	2 cut(s)	58, 110
BstMBI	GATC	2 cut(s)	333, 459
BstNSI	RCATGY	3 cut(s)	71, 350, 397
BstSCI	CCNGG	2 cut(s)	210, 211
BstSFI	CTRYAG	1 cut(s)	59
BstV2I	GAAGAC	1 cut(s)	209
BstX2I	RGATCY	2 cut(s)	333, 459
BstYI	RGATCY	2 cut(s)	333, 459
BsuRI	GGCC	2 cut(s)	191, 404
BtgI	CCRYGG	2 cut(s)	110, 487
BtsCI	GGATG	4 cut(s)	255, 370, 385, 437
Cac8I	GCNNGC	4 cut(s)	344, 348, 395, 442
Cfr13I	GGNCC	2 cut(s)	190, 402
Cfr9I	CCCGGG	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	38
CviAII	CATG	6 cut(s)	68, 92, 111, 347, 394, 547
CviQI	GTAC	1 cut(s)	38
DdeI	CTNAG	2 cut(s)	194, 398
DpnI	GATC	2 cut(s)	335, 461
DpnII	GATC	2 cut(s)	333, 459
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	110
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	6 cut(s)	71, 95, 114, 350, 397, 550
FatI	CATG	6 cut(s)	67, 91, 110, 346, 393, 546
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	4 cut(s)	242, 377, 392, 444
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	191, 404
HapII	CCGG	2 cut(s)	212, 285
Hin1II	CATG	6 cut(s)	71, 95, 114, 350, 397, 550
HindIII	AAGCTT	1 cut(s)	532
HinfI	GANTC	4 cut(s)	205, 281, 296, 561
HpaII	CCGG	2 cut(s)	212, 285
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	4 cut(s)	201, 379, 515, 599
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	1 cut(s)	162
HpyAV	CCTTC	5 cut(s)	85, 234, 300, 327, 547
HpyCH4III	ACNGT	2 cut(s)	488, 511
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	6 cut(s)	61, 137, 342, 428, 477, 499
HpyF3I	CTNAG	2 cut(s)	194, 398
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	6 cut(s)	71, 95, 114, 350, 397, 550
Kzo9I	GATC	2 cut(s)	333, 459
LmnI	GCTCC	2 cut(s)	276, 412
LpnPI	CCDG	8 cut(s)	33, 70, 225, 298, 347, 385, 414, 430
LweI	GCATC	3 cut(s)	355, 367, 584
MaeI	CTAG	1 cut(s)	441
MaeII	ACGT	1 cut(s)	54
MalI	GATC	2 cut(s)	335, 461
MboI	GATC	2 cut(s)	333, 459
MboII	GAAGA	6 cut(s)	3, 214, 227, 328, 341, 469
MfeI	CAATTG	1 cut(s)	138
MflI	RGATCY	2 cut(s)	333, 459
MluCI	AATT	2 cut(s)	32, 138
MlyI	GAGTC	2 cut(s)	199, 275
MnlI	CCTC	2 cut(s)	203, 473
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	2 cut(s)	212, 285
MspR9I	CCNGG	2 cut(s)	212, 213
MunI	CAATTG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	150
NciI	CCSGG	2 cut(s)	212, 213
NcoI	CCATGG	1 cut(s)	110
NdeII	GATC	2 cut(s)	333, 459
NheI	GCTAGC	1 cut(s)	440
NlaIII	CATG	6 cut(s)	71, 95, 114, 350, 397, 550
NlaIV	GGNNCC	2 cut(s)	89, 414
NspI	RCATGY	3 cut(s)	71, 350, 397
NspV	TTCGAA	1 cut(s)	540
PaeI	GCATGC	2 cut(s)	350, 397
PciI	ACATGT	1 cut(s)	67
PctI	GAATGC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	296, 561
PkrI	GCNGC	1 cut(s)	190
PleI	GAGTC	2 cut(s)	199, 275
PpsI	GAGTC	2 cut(s)	199, 275
PscI	ACATGT	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	89, 414
PspPI	GGNCC	2 cut(s)	190, 402
PstI	CTGCAG	1 cut(s)	63
PsuI	RGATCY	2 cut(s)	333, 459
RsaI	GTAC	1 cut(s)	39
RsaNI	GTAC	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	363
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	333, 459
Sau96I	GGNCC	2 cut(s)	190, 402
SchI	GAGTC	2 cut(s)	199, 275
ScrFI	CCNGG	2 cut(s)	212, 213
SetI	ASST	7 cut(s)	25, 57, 130, 311, 446, 520, 536
SfaNI	GCATC	3 cut(s)	355, 367, 584
SfcI	CTRYAG	1 cut(s)	59
SfuI	TTCGAA	1 cut(s)	540
SmaI	CCCGGG	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	363
SphI	GCATGC	2 cut(s)	350, 397
Sse9I	AATT	2 cut(s)	32, 138
SsiI	CCGC	2 cut(s)	188, 230
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	2 cut(s)	210, 211
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	2 cut(s)	488, 511
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	2 cut(s)	540, 564
TasI	AATT	2 cut(s)	32, 138
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	296, 561
TspDTI	ATGAA	2 cut(s)	60, 396
TspGWI	ACGGA	1 cut(s)	318
TspMI	CCCGGG	1 cut(s)	211
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	3 cut(s)	71, 350, 397
XmaI	CCCGGG	1 cut(s)	211
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.