Rroxscaffold_5G00383880

Peroxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011412
Physical Location & Seq
Forward (+)
63418284 .. 63420781
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383880.1

Sequence Viewer

Length: 699 bp
ATGTGCCATCTTCCAAGCTATGACGCAAAATTCAAAACAAACACCTTTCACCCTTCTTTGATCGATTCAAAACCCCTCTGTTCAGCTATGGGTTCCTCTTCTGTATCAGAAACCAAGAATATTCAAGAAGTTAGTGGGAAATTTGTTCCGAATGAACACGATGCTCTGCAGAGGCATGTAGCATTCTTCGACAGGAATCGCGATGGCATTGTTTATCCTTGGGAGACCTTTCAAGGTTTTCGTGCAATTGGGTGTGGCCTCCTCTTGTCCTCGTTCAGTGCTATCTTCATCAACTTCGGTCTCAGTCGGCAGACTCGCCCGGGAAAGTCGTTTTCTCTGCTGTTCCCGATTGAAGTTAGAAATATTCACAAAGCCAAACACGGCAGTGACTCAGGCGTCTACGACAGTGAAGGAAGGTTTGTTCCCTGTAAGTTTGAAGAGATTTTCATCAAGCATGCACATACTAATCCCAATGCTTTGACATCCGACGAACTGAATGGGCTGCTCAAAGCGAATAGGGAACCAAATGATCGCAGAGGATGGTTGGCTGCCTGGACTGAATGGAAGATCCTGTATTTGCTTTGCAAGGACAAGCATGGTTTACTGCACAAAGAAACCATTAGAGCTGTTTACGATGGGAGCTTGTTCGAGCGTATGGAGAAGGAAAGATCAGCTACAGCAGCCAAGAAGAAAGAGTAA

Protein Analysis

232

Amino Acids

26.37

Weight (kDa)

9.04

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Caleosin PF05042 53 - 219 2.2e-72 Caleosin related protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70670
fragaria_vesca FvH4_4g33760 FvH4_4g33760
malus_domestica MD13G1029500.v1.1 MD16G1020300.v1.1
prunus_persica Prupe.1G332000_v2.0.a1 Prupe.1G332000_v2.0.a1 Prupe.1G332000_v2.0.a1
pyrus_communis pycom13g01800 pycom16g01820
rosa_chinensis RchiOBHm_Chr4g0443291
rosa_laevigata RLG00000005940
rosa_multiflora Rmu_ssc0000122.1_g000004
rosa_roxburghii Rroxscaffold_5G00383880
rosa_rugosa Rorug04G0345400
rosa_samantha Rh4AG400300 Rh4BG411900 Rh4CG427200 Rh4DG407200
rosa_wichuraiana Rw4G034530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
AccI GTMKAC 1 cut(s) 399
AccII CGCG 1 cut(s) 201
AclWI GGATC 1 cut(s) 562
AcsI RAATTY 2 cut(s) 29, 140
AcyI GRCGYC 1 cut(s) 396
AgsI TTSAA 6 cut(s) 34, 69, 125, 233, 353, 437
AjnI CCWGG 1 cut(s) 551
AleI CACNNNNGTG 1 cut(s) 384
AloI GAACNNNNNNTCC 2 cut(s) 405, 437
AluBI AGCT 5 cut(s) 18, 86, 626, 642, 674
AluI AGCT 5 cut(s) 18, 86, 626, 642, 674
Alw26I GTCTC 2 cut(s) 218, 305
AlwI GGATC 1 cut(s) 562
Ama87I CYCGRG 1 cut(s) 319
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 3 cut(s) 502, 548, 680
ApoI RAATTY 2 cut(s) 29, 140
AsuC2I CCSGG 2 cut(s) 320, 321
AsuHPI GGTGA 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 319
BbvI GCAGC 3 cut(s) 489, 535, 692
BccI CCATC 4 cut(s) 15, 197, 534, 629
BceAI ACGGC 1 cut(s) 397
BciT130I CCWGG 1 cut(s) 553
BcnI CCSGG 2 cut(s) 320, 321
BcoDI GTCTC 2 cut(s) 218, 305
BfmI CTRYAG 2 cut(s) 167, 675
BisI GCNGC 3 cut(s) 503, 549, 681
BlsI GCNGC 3 cut(s) 504, 550, 682
Bme1390I CCNGG 3 cut(s) 320, 321, 553
BmeT110I CYCGRG 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 94, 522
BmrFI CCNGG 3 cut(s) 320, 321, 553
BmsI GCATC 1 cut(s) 151
BpuMI CCSGG 2 cut(s) 320, 321
Bsa29I ATCGAT 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 396
BsaI GGTCTC 2 cut(s) 218, 305
BsaJI CCNNGG 2 cut(s) 218, 319
Bse8I GATNNNNATC 1 cut(s) 446
BseBI CCWGG 1 cut(s) 553
BseCI ATCGAT 1 cut(s) 63
BseDI CCNNGG 2 cut(s) 218, 319
BseGI GGATG 2 cut(s) 482, 545
BseJI GATNNNNATC 1 cut(s) 446
BseMII CTCAG 2 cut(s) 316, 405
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 3 cut(s) 489, 535, 692
BsgI GTGCAG 1 cut(s) 590
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 1 cut(s) 258
BshVI ATCGAT 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 319
BsiSI CCGG 1 cut(s) 320
BsmAI GTCTC 2 cut(s) 218, 305
BsmI GAATGC 1 cut(s) 182
BsnI GGCC 1 cut(s) 258
Bso31I GGTCTC 2 cut(s) 218, 305
BsoBI CYCGRG 1 cut(s) 319
Bsp143I GATC 4 cut(s) 60, 529, 567, 668
Bsp68I TCGCGA 1 cut(s) 201
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 2 cut(s) 315, 404
BspDI ATCGAT 1 cut(s) 63
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 94, 522
BspMAI CTGCAG 1 cut(s) 171
BspPI GGATC 1 cut(s) 562
BspTNI GGTCTC 2 cut(s) 218, 305
BssECI CCNNGG 2 cut(s) 218, 319
BssMI GATC 4 cut(s) 60, 529, 567, 668
BssNI GRCGYC 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 553
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 2 cut(s) 103, 432
BstACI GRCGYC 1 cut(s) 396
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 2 cut(s) 302, 391
BstF5I GGATG 2 cut(s) 482, 545
BstFNI CGCG 1 cut(s) 201
BstKTI GATC 4 cut(s) 63, 532, 570, 671
BstMAI GTCTC 2 cut(s) 218, 305
BstMBI GATC 4 cut(s) 60, 529, 567, 668
BstMWI GCNNNNNNNGC 1 cut(s) 680
BstNI CCWGG 1 cut(s) 553
BstNSI RCATGY 2 cut(s) 179, 458
BstSCI CCNGG 3 cut(s) 318, 319, 551
BstSFI CTRYAG 2 cut(s) 167, 675
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 3 cut(s) 489, 535, 692
BstX2I RGATCY 1 cut(s) 567
BstYI RGATCY 1 cut(s) 567
Bsu15I ATCGAT 1 cut(s) 63
BsuRI GGCC 1 cut(s) 258
BsuTUI ATCGAT 1 cut(s) 63
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 2 cut(s) 482, 545
BtsI GCAGTG 1 cut(s) 391
BtsIMutI CAGTG 3 cut(s) 283, 391, 412
BtuMI TCGCGA 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 456
Cfr9I CCCGGG 1 cut(s) 319
ClaI ATCGAT 1 cut(s) 63
CseI GACGC 2 cut(s) 32, 385
CviAII CATG 3 cut(s) 176, 455, 596
DdeI CTNAG 2 cut(s) 302, 391
DpnI GATC 4 cut(s) 62, 531, 569, 670
DpnII GATC 4 cut(s) 60, 529, 567, 668
DrdI GACNNNNNNGTC 1 cut(s) 395
DseDI GACNNNNNNGTC 1 cut(s) 395
Eam1104I CTCTTC 2 cut(s) 103, 432
EarI CTCTTC 2 cut(s) 103, 432
Eco130I CCWWGG 1 cut(s) 218
Eco31I GGTCTC 2 cut(s) 218, 305
Eco88I CYCGRG 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 551
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 3 cut(s) 179, 458, 599
FaiI YATR 7 cut(s) 21, 89, 177, 456, 462, 597, 656
FatI CATG 3 cut(s) 175, 454, 595
FblI GTMKAC 1 cut(s) 399
Fnu4HI GCNGC 3 cut(s) 503, 549, 681
FokI GGATG 2 cut(s) 469, 552
Fsp4HI GCNGC 3 cut(s) 503, 549, 681
GluI GCNGC 3 cut(s) 503, 549, 681
HaeIII GGCC 1 cut(s) 258
HapII CCGG 1 cut(s) 320
HgaI GACGC 2 cut(s) 32, 385
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 3 cut(s) 179, 458, 599
HinfI GANTC 4 cut(s) 65, 196, 313, 389
HpaII CCGG 1 cut(s) 320
HphI GGTGA 1 cut(s) 41
Hpy166II GTNNAC 3 cut(s) 400, 602, 631
Hpy188I TCNGA 3 cut(s) 109, 150, 487
Hpy188III TCNNGA 3 cut(s) 125, 200, 346
Hpy8I GTNNAC 3 cut(s) 400, 602, 631
Hpy99I CGWCG 1 cut(s) 491
HpyAV CCTTC 4 cut(s) 63, 404, 408, 655
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4V TGCA 5 cut(s) 169, 245, 458, 585, 607
HpyF10VI GCNNNNNNNGC 1 cut(s) 680
HpyF3I CTNAG 2 cut(s) 302, 391
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 3 cut(s) 179, 458, 599
Kzo9I GATC 4 cut(s) 60, 529, 567, 668
LmnI GCTCC 1 cut(s) 639
LpnPI CCDG 7 cut(s) 178, 333, 378, 439, 538, 565, 584
Lsp1109I GCAGC 3 cut(s) 489, 535, 692
LweI GCATC 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 386
MalI GATC 4 cut(s) 62, 531, 569, 670
MboI GATC 4 cut(s) 60, 529, 567, 668
MboII GAAGA 5 cut(s) 90, 178, 277, 449, 577
MfeI CAATTG 1 cut(s) 246
MflI RGATCY 1 cut(s) 567
MluCI AATT 3 cut(s) 29, 140, 246
MlyI GAGTC 2 cut(s) 307, 383
MmeI TCCRAC 1 cut(s) 510
MnlI CCTC 7 cut(s) 86, 106, 165, 269, 272, 280, 530
MslI CAYNNNNRTG 1 cut(s) 384
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 3 cut(s) 320, 321, 553
MunI CAATTG 1 cut(s) 246
Mva1269I GAATGC 1 cut(s) 182
MvaI CCWGG 1 cut(s) 553
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 680
NciI CCSGG 2 cut(s) 320, 321
NdeII GATC 4 cut(s) 60, 529, 567, 668
NlaIII CATG 3 cut(s) 179, 458, 599
NlaIV GGNNCC 2 cut(s) 94, 522
NmuCI GTSAC 1 cut(s) 386
NruI TCGCGA 1 cut(s) 201
NspI RCATGY 2 cut(s) 179, 458
OliI CACNNNNGTG 1 cut(s) 384
PaeI GCATGC 1 cut(s) 458
PctI GAATGC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 65, 196
PkrI GCNGC 3 cut(s) 504, 550, 682
PleI GAGTC 2 cut(s) 307, 383
PpsI GAGTC 2 cut(s) 307, 383
Psp6I CCWGG 1 cut(s) 551
PspGI CCWGG 1 cut(s) 551
PspN4I GGNNCC 2 cut(s) 94, 522
PstI CTGCAG 1 cut(s) 171
PsuI RGATCY 1 cut(s) 567
RruI TCGCGA 1 cut(s) 201
RseI CAYNNNNRTG 1 cut(s) 384
SatI GCNGC 3 cut(s) 503, 549, 681
Sau3AI GATC 4 cut(s) 60, 529, 567, 668
SchI GAGTC 2 cut(s) 307, 383
ScrFI CCNGG 3 cut(s) 320, 321, 553
SetI ASST 9 cut(s) 20, 47, 88, 230, 238, 419, 628, 644, 676
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 2 cut(s) 167, 675
SmaI CCCGGG 1 cut(s) 321
SmiMI CAYNNNNRTG 1 cut(s) 384
SphI GCATGC 1 cut(s) 458
Sse9I AATT 3 cut(s) 29, 140, 246
SspI AATATT 2 cut(s) 121, 364
StyD4I CCNGG 3 cut(s) 318, 319, 551
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 407
TaqI TCGA 3 cut(s) 63, 189, 648
TaqII GACCGA 1 cut(s) 287
TasI AATT 3 cut(s) 29, 140, 246
TfiI GAWTC 2 cut(s) 65, 196
TscAI CASTG 3 cut(s) 283, 391, 412
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 3 cut(s) 502, 548, 680
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 3 cut(s) 168, 277, 436
TspMI CCCGGG 1 cut(s) 319
TspRI CASTG 3 cut(s) 283, 391, 412
XapI RAATTY 2 cut(s) 29, 140
XceI RCATGY 2 cut(s) 179, 458
XmaI CCCGGG 1 cut(s) 319
XmiI GTMKAC 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.