MD13G1029500.v1.1

Peroxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011412
Physical Location & Seq
Forward (+)
2121247 .. 2124425
3179 bp
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UTR
Exon/CDS
Intron
MD13G1029500.v1.1.491

Sequence Viewer

Length: 618 bp
ATGGGTTCCTCTTCTCTGTCAGAAAACAATAAGCAGCAAGGGAATAATGGTGGGAAATTTGTACCCAACGAACAGGACGTTCTGCAGAGACATGTAGCCTTCTTTGACAGGAACCGCGATGGCATTGTTTATCCTTGGGAAACTTTTCAAGGTTTTCGTGCGATCGGGTGTGGCATTTTGTTGTCCACAACCAGTGCCTTTCTCATCAACGCTGCCCTCAGTCAAAAGACTCGCCAGGGAAAGTTTCCTTCTCTACTTTTCCCAATTGAAGTTAAAAATATCCATAAAGCAAAACATGGCAGTGACTCTGGTGTCTATGATACTGAAGGAAGGTTTGTTCCGTTGAAATTTGAAGAAATCTTTGCAAAGCATGCCCATACGCATCCAAATTCGTTGACATCAGATGAACTGATGGGCATGCTAAAGACTAATAGGGTTCCCAAGGATTATGCAGGATGGGTTGCTGCCTATACAGAATGGAAGATCTTATACGTTCTCTGCAAGGACAAGAATGGTTTGCTGCACAAAGATACCGTTAGAGCTGTTTACGACGGAACCTTGTTCGAACGCATGGAGAAGGAAAAATCCGACGGAGACAAAAAGAAAGATGTTGTCTGA

Protein Analysis

206

Amino Acids

23.14

Weight (kDa)

8.94

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Caleosin PF05042 24 - 191 9.9e-76 Caleosin related protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70670
fragaria_vesca FvH4_4g33760 FvH4_4g33760
malus_domestica MD13G1029500.v1.1 MD16G1020300.v1.1
prunus_persica Prupe.1G332000_v2.0.a1 Prupe.1G332000_v2.0.a1 Prupe.1G332000_v2.0.a1
pyrus_communis pycom13g01800 pycom16g01820
rosa_chinensis RchiOBHm_Chr4g0443291
rosa_laevigata RLG00000005940
rosa_multiflora Rmu_ssc0000122.1_g000004
rosa_roxburghii Rroxscaffold_5G00383880
rosa_rugosa Rorug04G0345400
rosa_samantha Rh4AG400300 Rh4BG411900 Rh4CG427200 Rh4DG407200
rosa_wichuraiana Rw4G034530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 311
AccII CGCG 1 cut(s) 117
AciI CCGC 1 cut(s) 115
AcsI RAATTY 3 cut(s) 56, 347, 388
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 1 cut(s) 63
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 4 cut(s) 149, 269, 346, 353
AjnI CCWGG 1 cut(s) 234
AloI GAACNNNNNNTCC 2 cut(s) 321, 353
AluBI AGCT 1 cut(s) 542
AluI AGCT 1 cut(s) 542
Alw26I GTCTC 2 cut(s) 82, 588
ApeKI GCWGC 4 cut(s) 34, 212, 464, 520
ApoI RAATTY 3 cut(s) 56, 347, 388
Asp700I GAANNNNTTC 1 cut(s) 144
AsuII TTCGAA 1 cut(s) 564
BarI GAAGNNNNNNTAC 2 cut(s) 473, 505
BbvI GCAGC 4 cut(s) 46, 199, 451, 507
BccI CCATC 3 cut(s) 113, 406, 450
BciT130I CCWGG 1 cut(s) 236
BcoDI GTCTC 2 cut(s) 82, 588
BfmI CTRYAG 1 cut(s) 83
BglII AGATCT 1 cut(s) 483
BisI GCNGC 4 cut(s) 35, 213, 465, 521
BlsI GCNGC 4 cut(s) 36, 214, 466, 522
Bme1390I CCNGG 1 cut(s) 236
BmiI GGNNCC 4 cut(s) 7, 113, 438, 556
BmrFI CCNGG 1 cut(s) 236
BmsI GCATC 1 cut(s) 391
Bpu14I TTCGAA 1 cut(s) 564
BsaJI CCNNGG 3 cut(s) 134, 235, 441
Bse1I ACTGG 1 cut(s) 192
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 3 cut(s) 134, 235, 441
BseGI GGATG 2 cut(s) 382, 461
BseMII CTCAG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 192
BseXI GCAGC 4 cut(s) 46, 199, 451, 507
BsgI GTGCAG 1 cut(s) 506
Bsh1236I CGCG 1 cut(s) 117
Bsh1285I CGRYCG 1 cut(s) 165
BsiEI CGRYCG 1 cut(s) 165
BsmAI GTCTC 2 cut(s) 82, 588
Bsp119I TTCGAA 1 cut(s) 564
Bsp143I GATC 2 cut(s) 162, 483
BspACI CCGC 1 cut(s) 115
BspCNI CTCAG 1 cut(s) 231
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 4 cut(s) 7, 113, 438, 556
BspMAI CTGCAG 1 cut(s) 87
BspT104I TTCGAA 1 cut(s) 564
BsrI ACTGG 1 cut(s) 192
BssECI CCNNGG 3 cut(s) 134, 235, 441
BssMI GATC 2 cut(s) 162, 483
BssT1I CCWWGG 2 cut(s) 134, 441
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 535
Bst6I CTCTTC 1 cut(s) 16
BstAPI GCANNNNNTGC 1 cut(s) 371
BstBI TTCGAA 1 cut(s) 564
BstC8I GCNNGC 2 cut(s) 372, 419
BstDEI CTNAG 1 cut(s) 218
BstF5I GGATG 2 cut(s) 382, 461
BstFNI CGCG 1 cut(s) 117
BstKTI GATC 2 cut(s) 165, 486
BstMAI GTCTC 2 cut(s) 82, 588
BstMBI GATC 2 cut(s) 162, 483
BstMCI CGRYCG 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNI CCWGG 1 cut(s) 236
BstNSI RCATGY 3 cut(s) 95, 374, 421
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 1 cut(s) 83
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 4 cut(s) 46, 199, 451, 507
BstX2I RGATCY 1 cut(s) 483
BstYI RGATCY 1 cut(s) 483
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 2 cut(s) 382, 461
BtsI GCAGTG 1 cut(s) 307
BtsIMutI CAGTG 2 cut(s) 199, 307
Cac8I GCNNGC 2 cut(s) 372, 419
Csp6I GTAC 1 cut(s) 62
CviAII CATG 5 cut(s) 92, 296, 371, 418, 571
CviJI RGCY 2 cut(s) 98, 542
CviKI_1 RGCY 2 cut(s) 98, 542
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 1 cut(s) 218
DpnI GATC 2 cut(s) 164, 485
DpnII GATC 2 cut(s) 162, 483
DrdI GACNNNNNNGTC 1 cut(s) 311
DseDI GACNNNNNNGTC 1 cut(s) 311
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco130I CCWWGG 2 cut(s) 134, 441
Eco57I CTGAAG 1 cut(s) 345
EcoRII CCWGG 1 cut(s) 234
EcoT14I CCWWGG 2 cut(s) 134, 441
ErhI CCWWGG 2 cut(s) 134, 441
FaeI CATG 5 cut(s) 95, 299, 374, 421, 574
FatI CATG 5 cut(s) 91, 295, 370, 417, 570
Fnu4HI GCNGC 4 cut(s) 35, 213, 465, 521
FokI GGATG 2 cut(s) 369, 468
Fsp4HI GCNGC 4 cut(s) 35, 213, 465, 521
GluI GCNGC 4 cut(s) 35, 213, 465, 521
Hin1II CATG 5 cut(s) 95, 299, 374, 421, 574
HincII GTYRAC 1 cut(s) 396
HindII GTYRAC 1 cut(s) 396
HinfI GANTC 2 cut(s) 229, 305
Hpy166II GTNNAC 3 cut(s) 186, 396, 547
Hpy188I TCNGA 4 cut(s) 22, 403, 589, 617
Hpy8I GTNNAC 3 cut(s) 186, 396, 547
Hpy99I CGWCG 2 cut(s) 554, 593
HpyAV CCTTC 5 cut(s) 109, 258, 320, 324, 571
HpyCH4III ACNGT 1 cut(s) 535
HpyCH4IV ACGT 2 cut(s) 78, 492
HpyCH4V TGCA 5 cut(s) 85, 365, 452, 501, 523
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 1 cut(s) 218
HpySE526I ACGT 2 cut(s) 78, 492
Hsp92II CATG 5 cut(s) 95, 299, 374, 421, 574
Kzo9I GATC 2 cut(s) 162, 483
LpnPI CCDG 7 cut(s) 59, 94, 205, 221, 248, 294, 438
Lsp1109I GCAGC 4 cut(s) 46, 199, 451, 507
LweI GCATC 1 cut(s) 391
MaeII ACGT 2 cut(s) 78, 492
MaeIII GTNAC 1 cut(s) 302
MalI GATC 2 cut(s) 164, 485
MboI GATC 2 cut(s) 162, 483
MboII GAAGA 3 cut(s) 3, 365, 493
MfeI CAATTG 1 cut(s) 264
MflI RGATCY 1 cut(s) 483
MluCI AATT 4 cut(s) 56, 264, 347, 388
MlyI GAGTC 2 cut(s) 223, 299
MmeI TCCRAC 1 cut(s) 612
MnlI CCTC 2 cut(s) 19, 227
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 236
MunI CAATTG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 236
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeII GATC 2 cut(s) 162, 483
NlaIII CATG 5 cut(s) 95, 299, 374, 421, 574
NlaIV GGNNCC 4 cut(s) 7, 113, 438, 556
NmuCI GTSAC 1 cut(s) 302
NspI RCATGY 3 cut(s) 95, 374, 421
NspV TTCGAA 1 cut(s) 564
PaeI GCATGC 2 cut(s) 374, 421
PciI ACATGT 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 144
PkrI GCNGC 4 cut(s) 36, 214, 466, 522
Ple19I CGATCG 1 cut(s) 165
PleI GAGTC 2 cut(s) 223, 299
PpsI GAGTC 2 cut(s) 223, 299
PscI ACATGT 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 4 cut(s) 7, 113, 438, 556
PstI CTGCAG 1 cut(s) 87
PsuI RGATCY 1 cut(s) 483
PvuI CGATCG 1 cut(s) 165
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 4 cut(s) 35, 213, 465, 521
Sau3AI GATC 2 cut(s) 162, 483
SchI GAGTC 2 cut(s) 223, 299
ScrFI CCNGG 1 cut(s) 236
SetI ASST 6 cut(s) 81, 154, 335, 495, 544, 560
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 83
SfuI TTCGAA 1 cut(s) 564
SmiMI CAYNNNNRTG 1 cut(s) 300
SphI GCATGC 2 cut(s) 374, 421
Sse9I AATT 4 cut(s) 56, 264, 347, 388
SsiI CCGC 1 cut(s) 115
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 2 cut(s) 134, 441
TaaI ACNGT 1 cut(s) 535
TaiI ACGT 2 cut(s) 81, 495
TaqI TCGA 1 cut(s) 564
TasI AATT 4 cut(s) 56, 264, 347, 388
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 2 cut(s) 199, 307
TseFI GTSAC 1 cut(s) 302
TseI GCWGC 4 cut(s) 34, 212, 464, 520
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 1 cut(s) 420
TspGWI ACGGA 3 cut(s) 330, 567, 606
TspRI CASTG 2 cut(s) 199, 307
XapI RAATTY 3 cut(s) 56, 347, 388
XceI RCATGY 3 cut(s) 95, 374, 421
XmnI GAANNNNTTC 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.