Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000122.1

Orthogroup ID

OG0011412

Physical Location & Seq

Genomic Coordinates Forward (+)

13582 .. 15817

Gene Structure 2236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000122.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

atgggttcctcttctgtatcagaaaccaagaatattcaagaagttagtgggaaatttgttccgaatgaacacgatgctctgcagaggcatgtagcattcttcgacaggaatcacgatggcattgtttatccttgggagacctttcaaggttttcgtgcaattgggtgtggcctcctcttgtcctcgttcagtgctatcttcatcaacttcggtctcagtcggcagactcgcccgggaaagtcgttttctctgctgtttccgattgaagttagaaatattcacaaagccaaacacggcagtgactcaggcgtctacgacaatgaaggaaggtttgttccctgtaagtttgaagagattttcatcaagcatgcacatactaatcccaatgctttgacatctgccgaactgaatgggctgctcaaagcaaatagggaaccaaatgatcgcagaggatggttggctgcctggactgaatggaagatcctgtatttgctttgcaaggacaagcatggtttactgcacaaagaaaccattagagctgtttatgatgggagcttgttcgaccgtatggagaaggaaagatcagctgcagcagccaagaagaaagatattgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009819 GO:0010033 GO:0010035 GO:0016298 GO:0016787 GO:0016788 GO:0033993 GO:0042221 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Caleosin

Protein Analysis

205

Amino Acids

23.25

Weight (kDa)

9.11

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70670
fragaria_vesca	FvH4_4g33760 FvH4_4g33760
malus_domestica	MD13G1029500.v1.1 MD16G1020300.v1.1
prunus_persica	Prupe.1G332000_v2.0.a1 Prupe.1G332000_v2.0.a1 Prupe.1G332000_v2.0.a1
pyrus_communis	pycom13g01800 pycom16g01820
rosa_chinensis	RchiOBHm_Chr4g0443291
rosa_laevigata	RLG00000005940
rosa_multiflora	Rmu_ssc0000122.1_g000004
rosa_roxburghii	Rroxscaffold_5G00383880
rosa_rugosa	Rorug04G0345400
rosa_samantha	Rh4AG400300 Rh4BG411900 Rh4CG427200 Rh4DG407200
rosa_wichuraiana	Rw4G034530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	308
AccI	GTMKAC	1 cut(s)	312
AclWI	GGATC	1 cut(s)	475
AcsI	RAATTY	1 cut(s)	53
AcyI	GRCGYC	1 cut(s)	309
AgsI	TTSAA	4 cut(s)	38, 146, 266, 350
AjnI	CCWGG	1 cut(s)	464
AleI	CACNNNNGTG	1 cut(s)	297
AloI	GAACNNNNNNTCC	2 cut(s)	318, 350
AluBI	AGCT	3 cut(s)	539, 555, 587
AluI	AGCT	3 cut(s)	539, 555, 587
Alw26I	GTCTC	2 cut(s)	131, 218
AlwI	GGATC	1 cut(s)	475
Ama87I	CYCGRG	1 cut(s)	232
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	5 cut(s)	415, 461, 587, 590, 593
ApoI	RAATTY	1 cut(s)	53
AsuC2I	CCSGG	2 cut(s)	233, 234
AvaI	CYCGRG	1 cut(s)	232
BbvI	GCAGC	5 cut(s)	402, 448, 574, 602, 605
BccI	CCATC	3 cut(s)	110, 447, 542
BceAI	ACGGC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	466
BcnI	CCSGG	2 cut(s)	233, 234
BcoDI	GTCTC	2 cut(s)	131, 218
BfmI	CTRYAG	2 cut(s)	80, 588
BisI	GCNGC	5 cut(s)	416, 462, 588, 591, 594
BlsI	GCNGC	5 cut(s)	417, 463, 589, 592, 595
Bme1390I	CCNGG	3 cut(s)	233, 234, 466
BmeT110I	CYCGRG	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	7, 435
BmrFI	CCNGG	3 cut(s)	233, 234, 466
BmsI	GCATC	1 cut(s)	64
BpuMI	CCSGG	2 cut(s)	233, 234
BsaBI	GATNNNNATC	1 cut(s)	359
BsaHI	GRCGYC	1 cut(s)	309
BsaI	GGTCTC	2 cut(s)	131, 218
BsaJI	CCNNGG	2 cut(s)	131, 232
Bse8I	GATNNNNATC	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	2 cut(s)	131, 232
BseGI	GGATG	1 cut(s)	458
BseJI	GATNNNNATC	1 cut(s)	359
BseMII	CTCAG	2 cut(s)	229, 318
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	5 cut(s)	402, 448, 574, 602, 605
BsgI	GTGCAG	1 cut(s)	503
Bsh1285I	CGRYCG	1 cut(s)	565
BshFI	GGCC	1 cut(s)	171
BsiEI	CGRYCG	1 cut(s)	565
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	233
BsmAI	GTCTC	2 cut(s)	131, 218
BsmI	GAATGC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	2 cut(s)	131, 218
BsoBI	CYCGRG	1 cut(s)	232
Bsp143I	GATC	3 cut(s)	442, 480, 581
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	228, 317
BspLI	GGNNCC	2 cut(s)	7, 435
BspMAI	CTGCAG	2 cut(s)	84, 592
BspPI	GGATC	1 cut(s)	475
BspTNI	GGTCTC	2 cut(s)	131, 218
BssECI	CCNNGG	2 cut(s)	131, 232
BssMI	GATC	3 cut(s)	442, 480, 581
BssNI	GRCGYC	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	1 cut(s)	566
Bst6I	CTCTTC	2 cut(s)	16, 345
BstACI	GRCGYC	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	2 cut(s)	215, 304
BstF5I	GGATG	1 cut(s)	458
BstKTI	GATC	3 cut(s)	445, 483, 584
BstMAI	GTCTC	2 cut(s)	131, 218
BstMBI	GATC	3 cut(s)	442, 480, 581
BstMCI	CGRYCG	1 cut(s)	565
BstMWI	GCNNNNNNNGC	1 cut(s)	593
BstNI	CCWGG	1 cut(s)	466
BstNSI	RCATGY	2 cut(s)	92, 371
BstSCI	CCNGG	3 cut(s)	231, 232, 464
BstSFI	CTRYAG	2 cut(s)	80, 588
BstV1I	GCAGC	5 cut(s)	402, 448, 574, 602, 605
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	458
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	196, 304
Cac8I	GCNNGC	1 cut(s)	369
Cfr9I	CCCGGG	1 cut(s)	232
CseI	GACGC	1 cut(s)	298
CviAII	CATG	3 cut(s)	89, 368, 509
CviJI	RGCY	8 cut(s)	171, 287, 415, 461, 539, 555, 587, 596
CviKI_1	RGCY	8 cut(s)	171, 287, 415, 461, 539, 555, 587, 596
DdeI	CTNAG	2 cut(s)	215, 304
DpnI	GATC	3 cut(s)	444, 482, 583
DpnII	GATC	3 cut(s)	442, 480, 581
DrdI	GACNNNNNNGTC	1 cut(s)	308
DseDI	GACNNNNNNGTC	1 cut(s)	308
Eam1104I	CTCTTC	2 cut(s)	16, 345
EarI	CTCTTC	2 cut(s)	16, 345
Eco130I	CCWWGG	1 cut(s)	131
Eco31I	GGTCTC	2 cut(s)	131, 218
Eco88I	CYCGRG	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	464
EcoT14I	CCWWGG	1 cut(s)	131
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	3 cut(s)	92, 371, 512
FaiI	YATR	6 cut(s)	90, 369, 375, 510, 546, 569
FatI	CATG	3 cut(s)	88, 367, 508
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	5 cut(s)	416, 462, 588, 591, 594
FokI	GGATG	1 cut(s)	465
Fsp4HI	GCNGC	5 cut(s)	416, 462, 588, 591, 594
GluI	GCNGC	5 cut(s)	416, 462, 588, 591, 594
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	298
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	3 cut(s)	92, 371, 512
HinfI	GANTC	3 cut(s)	109, 226, 302
HpaII	CCGG	1 cut(s)	233
Hpy166II	GTNNAC	2 cut(s)	313, 515
Hpy188I	TCNGA	4 cut(s)	22, 63, 261, 617
Hpy188III	TCNNGA	2 cut(s)	38, 113
Hpy8I	GTNNAC	2 cut(s)	313, 515
HpyAV	CCTTC	3 cut(s)	317, 321, 568
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4V	TGCA	6 cut(s)	82, 158, 371, 498, 520, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	593
HpyF3I	CTNAG	2 cut(s)	215, 304
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	3 cut(s)	92, 371, 512
Kzo9I	GATC	3 cut(s)	442, 480, 581
LmnI	GCTCC	1 cut(s)	552
LpnPI	CCDG	7 cut(s)	91, 246, 291, 352, 451, 478, 497
Lsp1109I	GCAGC	5 cut(s)	402, 448, 574, 602, 605
LweI	GCATC	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	3 cut(s)	444, 482, 583
MboI	GATC	3 cut(s)	442, 480, 581
MboII	GAAGA	6 cut(s)	3, 91, 190, 362, 490, 613
MfeI	CAATTG	1 cut(s)	159
MflI	RGATCY	1 cut(s)	480
MluCI	AATT	2 cut(s)	53, 159
MlyI	GAGTC	2 cut(s)	220, 296
MnlI	CCTC	6 cut(s)	19, 78, 182, 185, 193, 443
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	3 cut(s)	233, 234, 466
MunI	CAATTG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	466
MwoI	GCNNNNNNNGC	1 cut(s)	593
NciI	CCSGG	2 cut(s)	233, 234
NdeII	GATC	3 cut(s)	442, 480, 581
NlaIII	CATG	3 cut(s)	92, 371, 512
NlaIV	GGNNCC	2 cut(s)	7, 435
NmuCI	GTSAC	1 cut(s)	299
NspI	RCATGY	2 cut(s)	92, 371
OliI	CACNNNNGTG	1 cut(s)	297
PaeI	GCATGC	1 cut(s)	371
PctI	GAATGC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	109
PkrI	GCNGC	5 cut(s)	417, 463, 589, 592, 595
PleI	GAGTC	2 cut(s)	220, 296
PpsI	GAGTC	2 cut(s)	220, 296
Psp6I	CCWGG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	2 cut(s)	7, 435
PstI	CTGCAG	2 cut(s)	84, 592
PsuI	RGATCY	1 cut(s)	480
PvuII	CAGCTG	1 cut(s)	587
RseI	CAYNNNNRTG	1 cut(s)	297
SatI	GCNGC	5 cut(s)	416, 462, 588, 591, 594
Sau3AI	GATC	3 cut(s)	442, 480, 581
SchI	GAGTC	2 cut(s)	220, 296
ScrFI	CCNGG	3 cut(s)	233, 234, 466
SetI	ASST	6 cut(s)	143, 151, 332, 541, 557, 589
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	2 cut(s)	80, 588
SmaI	CCCGGG	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	297
SphI	GCATGC	1 cut(s)	371
Sse9I	AATT	2 cut(s)	53, 159
SspI	AATATT	2 cut(s)	34, 277
StyD4I	CCNGG	3 cut(s)	231, 232, 464
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	566
TaqI	TCGA	2 cut(s)	102, 561
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	2 cut(s)	53, 159
TfiI	GAWTC	1 cut(s)	109
TscAI	CASTG	2 cut(s)	196, 304
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	5 cut(s)	415, 461, 587, 590, 593
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	4 cut(s)	81, 190, 336, 349
TspMI	CCCGGG	1 cut(s)	232
TspRI	CASTG	2 cut(s)	196, 304
XapI	RAATTY	1 cut(s)	53
XceI	RCATGY	2 cut(s)	92, 371
XmaI	CCCGGG	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.