Rh4DG407200

Peroxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0011412
Physical Location & Seq
Forward (+)
62042310 .. 62045758
3449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG407200.1

Sequence Viewer

Length: 498 bp
ATGGGTTCCTCTCCTGTATCAGAAACCAAGAATATTCAAGAAGTTAGTGGGAAATTTGTTCCGAATGAACACGATGCTCTGCAGAGGCATGTAGCATTCTTCGACAGGAATCACGATGGCATTGTTTATCCTTGGGAGACCTTTCAAGGTTTTCGTGCAATTGGGTGTGGCCTCCTCTTGTCCTCGTTCAGTGCTATCTTCATCAACTTCGGTCTCAGTCGGCAGACTCGCCCGGGAAAGTCGTTTTCTCTGCTGTTTCCGATTGAAGTTAGAAATATTCACAAAGCCAAACACGGCAGTGACTCAGGCGTCTACGACAGTGAAGGAAGGTTTGTTCCCTGTAAGTTTGAAGAGATTTTCATCAAGCATGCACATACTAATCCCAATGCTTTGACATCCGCTGAACTGAATGGGCTGCTCAAAGCGAATAGGGAACCAAATGATCGCAGAGGATGGTATGTTAACATTTCTCATTTGACCCAACTCTCAAGGTTTTGA

Protein Analysis

165

Amino Acids

18.65

Weight (kDa)

9.0

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Caleosin PF05042 24 - 158 1.6e-53 Caleosin related protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70670
fragaria_vesca FvH4_4g33760 FvH4_4g33760
malus_domestica MD13G1029500.v1.1 MD16G1020300.v1.1
prunus_persica Prupe.1G332000_v2.0.a1 Prupe.1G332000_v2.0.a1 Prupe.1G332000_v2.0.a1
pyrus_communis pycom13g01800 pycom16g01820
rosa_chinensis RchiOBHm_Chr4g0443291
rosa_laevigata RLG00000005940
rosa_multiflora Rmu_ssc0000122.1_g000004
rosa_roxburghii Rroxscaffold_5G00383880
rosa_rugosa Rorug04G0345400
rosa_samantha Rh4AG400300 Rh4BG411900 Rh4CG427200 Rh4DG407200
rosa_wichuraiana Rw4G034530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
AccI GTMKAC 1 cut(s) 312
AciI CCGC 1 cut(s) 399
AcsI RAATTY 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 309
AgsI TTSAA 4 cut(s) 38, 146, 266, 350
AleI CACNNNNGTG 1 cut(s) 297
AloI GAACNNNNNNTCC 2 cut(s) 318, 350
Alw26I GTCTC 2 cut(s) 131, 218
Ama87I CYCGRG 1 cut(s) 232
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 415
ApoI RAATTY 1 cut(s) 53
AsuC2I CCSGG 2 cut(s) 233, 234
AvaI CYCGRG 1 cut(s) 232
BbvI GCAGC 1 cut(s) 402
BccI CCATC 2 cut(s) 110, 447
BceAI ACGGC 1 cut(s) 310
BcnI CCSGG 2 cut(s) 233, 234
BcoDI GTCTC 2 cut(s) 131, 218
BfmI CTRYAG 1 cut(s) 80
BisI GCNGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 417
Bme1390I CCNGG 2 cut(s) 233, 234
BmeT110I CYCGRG 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 7, 435
BmrFI CCNGG 2 cut(s) 233, 234
BmsI GCATC 1 cut(s) 64
BpuEI CTTGAG 1 cut(s) 472
BpuMI CCSGG 2 cut(s) 233, 234
BsaBI GATNNNNATC 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 309
BsaI GGTCTC 2 cut(s) 131, 218
BsaJI CCNNGG 2 cut(s) 131, 232
Bse8I GATNNNNATC 1 cut(s) 359
BseDI CCNNGG 2 cut(s) 131, 232
BseGI GGATG 2 cut(s) 395, 458
BseJI GATNNNNATC 1 cut(s) 359
BseMII CTCAG 2 cut(s) 229, 318
BseRI GAGGAG 1 cut(s) 164
BseXI GCAGC 1 cut(s) 402
BshFI GGCC 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 1 cut(s) 233
BsmAI GTCTC 2 cut(s) 131, 218
BsmI GAATGC 1 cut(s) 95
BsnI GGCC 1 cut(s) 171
Bso31I GGTCTC 2 cut(s) 131, 218
BsoBI CYCGRG 1 cut(s) 232
Bsp143I GATC 1 cut(s) 442
BspACI CCGC 1 cut(s) 399
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 2 cut(s) 228, 317
BspLI GGNNCC 2 cut(s) 7, 435
BspMAI CTGCAG 1 cut(s) 84
BspTNI GGTCTC 2 cut(s) 131, 218
BssECI CCNNGG 2 cut(s) 131, 232
BssMI GATC 1 cut(s) 442
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 131
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 345
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 215, 304
BstF5I GGATG 2 cut(s) 395, 458
BstKTI GATC 1 cut(s) 445
BstMAI GTCTC 2 cut(s) 131, 218
BstMBI GATC 1 cut(s) 442
BstNSI RCATGY 2 cut(s) 92, 371
BstSCI CCNGG 2 cut(s) 231, 232
BstSFI CTRYAG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 402
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 2 cut(s) 395, 458
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 3 cut(s) 196, 304, 325
Cac8I GCNNGC 1 cut(s) 369
Cfr9I CCCGGG 1 cut(s) 232
CseI GACGC 1 cut(s) 298
CviAII CATG 2 cut(s) 89, 368
CviJI RGCY 3 cut(s) 171, 287, 415
CviKI_1 RGCY 3 cut(s) 171, 287, 415
DdeI CTNAG 2 cut(s) 215, 304
DpnI GATC 1 cut(s) 444
DpnII GATC 1 cut(s) 442
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco130I CCWWGG 1 cut(s) 131
Eco31I GGTCTC 2 cut(s) 131, 218
Eco88I CYCGRG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 2 cut(s) 92, 371
FaiI YATR 4 cut(s) 90, 369, 375, 459
FatI CATG 2 cut(s) 88, 367
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 416
FokI GGATG 2 cut(s) 382, 465
Fsp4HI GCNGC 1 cut(s) 416
GluI GCNGC 1 cut(s) 416
HaeIII GGCC 1 cut(s) 171
HapII CCGG 1 cut(s) 233
HgaI GACGC 1 cut(s) 298
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 2 cut(s) 92, 371
HincII GTYRAC 1 cut(s) 463
HindII GTYRAC 1 cut(s) 463
HinfI GANTC 3 cut(s) 109, 226, 302
HpaI GTTAAC 1 cut(s) 463
HpaII CCGG 1 cut(s) 233
Hpy166II GTNNAC 2 cut(s) 313, 463
Hpy188I TCNGA 3 cut(s) 22, 63, 261
Hpy188III TCNNGA 2 cut(s) 38, 113
Hpy8I GTNNAC 2 cut(s) 313, 463
HpyAV CCTTC 2 cut(s) 317, 321
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4V TGCA 3 cut(s) 82, 158, 371
HpyF3I CTNAG 2 cut(s) 215, 304
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 2 cut(s) 92, 371
KspAI GTTAAC 1 cut(s) 463
Kzo9I GATC 1 cut(s) 442
LpnPI CCDG 5 cut(s) 27, 91, 246, 291, 352
Lsp1109I GCAGC 1 cut(s) 402
LweI GCATC 1 cut(s) 64
MaeIII GTNAC 1 cut(s) 299
MalI GATC 1 cut(s) 444
MboI GATC 1 cut(s) 442
MboII GAAGA 3 cut(s) 91, 190, 362
MfeI CAATTG 1 cut(s) 159
MluCI AATT 2 cut(s) 53, 159
MlyI GAGTC 2 cut(s) 220, 296
MnlI CCTC 6 cut(s) 19, 78, 182, 185, 193, 443
MseI TTAA 1 cut(s) 462
MslI CAYNNNNRTG 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 2 cut(s) 233, 234
MunI CAATTG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 95
NciI CCSGG 2 cut(s) 233, 234
NdeII GATC 1 cut(s) 442
NlaIII CATG 2 cut(s) 92, 371
NlaIV GGNNCC 2 cut(s) 7, 435
NmuCI GTSAC 1 cut(s) 299
NspI RCATGY 2 cut(s) 92, 371
OliI CACNNNNGTG 1 cut(s) 297
PaeI GCATGC 1 cut(s) 371
PctI GAATGC 1 cut(s) 95
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 1 cut(s) 417
PleI GAGTC 2 cut(s) 220, 296
PpsI GAGTC 2 cut(s) 220, 296
PspN4I GGNNCC 2 cut(s) 7, 435
PstI CTGCAG 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 1 cut(s) 416
Sau3AI GATC 1 cut(s) 442
SchI GAGTC 2 cut(s) 220, 296
ScrFI CCNGG 2 cut(s) 233, 234
SetI ASST 4 cut(s) 143, 151, 332, 494
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 1 cut(s) 80
SmaI CCCGGG 1 cut(s) 234
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
SphI GCATGC 1 cut(s) 371
Sse9I AATT 2 cut(s) 53, 159
SsiI CCGC 1 cut(s) 399
SspI AATATT 2 cut(s) 34, 277
StyD4I CCNGG 2 cut(s) 231, 232
StyI CCWWGG 1 cut(s) 131
TaaI ACNGT 1 cut(s) 320
TaqI TCGA 1 cut(s) 102
TaqII GACCGA 1 cut(s) 200
TasI AATT 2 cut(s) 53, 159
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 3 cut(s) 196, 304, 325
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 3 cut(s) 81, 190, 349
TspMI CCCGGG 1 cut(s) 232
TspRI CASTG 3 cut(s) 196, 304, 325
XapI RAATTY 1 cut(s) 53
XceI RCATGY 2 cut(s) 92, 371
XmaI CCCGGG 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.